Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0006127

Physical Location & Seq

Genomic Coordinates Reverse (-)

69915322 .. 69915925

Gene Structure 604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG499200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGATCGGAGACAAGAAGAGCGAACTGGAAGATATGGAACTTCAAGGCTGCAATACCTTCAGGCTAACTCCGCCTACTGAATTGGTGACTCAATTTCAGAGTGCTACTAGTCAAGAAACAAAAGAGAAAATTGTTGCTAATTTGGCAAATTTTGCTTTTGATCCTTACAACTATACCTATTTGCGCCAGATTACATACAGCTCAATGTGGTGGAACATTTTCTGGACTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0016020 GO:0016342 GO:0019897 GO:0019898 GO:0019899 GO:0019902 GO:0019903 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045294 GO:0045296 GO:0050839 GO:0071944 GO:0098796 GO:0098797

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

77

Amino Acids

9.05

Weight (kDa)

4.65

Isoelectric Point (pI)

40.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37290 AT5G37290 AT5G37290
fragaria_vesca	FvH4_5g26310 FvH4_5g27560 FvH4_5g27560
malus_domestica	MD09G1253300.v1.1
prunus_persica	Prupe.3G143200_v2.0.a1 Prupe.3G143200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0218931
rosa_laevigata	RLG00000000573 RLG00000002316 RLG00000014261
rosa_multiflora	Rmu_sc0003823.1_g000009
rosa_roxburghii	Rroxscaffold_3G00240300
rosa_rugosa	Rorug07G0179900 Rorug07G0180000 Rorug07G0180100 Rorug07G0344700
rosa_samantha	Rh7AG323200 Rh7AG499200 Rh7BG314200 Rh7CG339900 Rh7DG320300
rosa_wichuraiana	Rw6G011510 Rw7G027390 Rw7G042180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	71
AclWI	GGATC	1 cut(s)	155
AcsI	RAATTY	1 cut(s)	148
AcuI	CTGAAG	1 cut(s)	43
AgsI	TTSAA	1 cut(s)	44
AhlI	ACTAGT	1 cut(s)	107
AluBI	AGCT	1 cut(s)	201
AluI	AGCT	1 cut(s)	201
Alw26I	GTCTC	1 cut(s)	3
AlwI	GGATC	1 cut(s)	155
ApeKI	GCWGC	1 cut(s)	48
ApoI	RAATTY	1 cut(s)	148
Asp700I	GAANNNNTTC	1 cut(s)	218
AspLEI	GCGC	1 cut(s)	186
AsuHPI	GGTGA	1 cut(s)	97
BbvI	GCAGC	1 cut(s)	35
BcoDI	GTCTC	1 cut(s)	3
BcuI	ACTAGT	1 cut(s)	107
BfaI	CTAG	1 cut(s)	108
BisI	GCNGC	1 cut(s)	49
BlsI	GCNGC	1 cut(s)	50
Bse1I	ACTGG	1 cut(s)	30
BseNI	ACTGG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	35
BsmAI	GTCTC	1 cut(s)	3
Bsp143I	GATC	2 cut(s)	3, 160
BspACI	CCGC	1 cut(s)	71
BspPI	GGATC	1 cut(s)	155
BspQI	GCTCTTC	1 cut(s)	11
BsrI	ACTGG	1 cut(s)	30
BssMI	GATC	2 cut(s)	3, 160
Bst6I	CTCTTC	1 cut(s)	11
BstAPI	GCANNNNNTGC	1 cut(s)	152
BstHHI	GCGC	1 cut(s)	186
BstKTI	GATC	2 cut(s)	6, 163
BstMAI	GTCTC	1 cut(s)	3
BstMBI	GATC	2 cut(s)	3, 160
BstMWI	GCNNNNNNNGC	3 cut(s)	70, 143, 152
BstV1I	GCAGC	1 cut(s)	35
CfoI	GCGC	1 cut(s)	186
CviJI	RGCY	3 cut(s)	48, 64, 201
CviKI_1	RGCY	3 cut(s)	48, 64, 201
DpnI	GATC	2 cut(s)	5, 162
DpnII	GATC	2 cut(s)	3, 160
Eam1104I	CTCTTC	1 cut(s)	11
EarI	CTCTTC	1 cut(s)	11
EciI	GGCGGA	1 cut(s)	60
Eco57I	CTGAAG	1 cut(s)	43
FaiI	YATR	4 cut(s)	35, 174, 196, 232
Fnu4HI	GCNGC	1 cut(s)	49
Fsp4HI	GCNGC	1 cut(s)	49
FspBI	CTAG	1 cut(s)	108
GlaI	GCGC	1 cut(s)	185
GluI	GCNGC	1 cut(s)	49
HhaI	GCGC	1 cut(s)	186
Hin6I	GCGC	1 cut(s)	184
HinP1I	GCGC	1 cut(s)	184
HinfI	GANTC	1 cut(s)	88
HphI	GGTGA	1 cut(s)	97
Hpy188I	TCNGA	2 cut(s)	8, 99
Hpy188III	TCNNGA	2 cut(s)	113, 223
HpyAV	CCTTC	1 cut(s)	67
HpyCH4V	TGCA	2 cut(s)	51, 230
HpyF10VI	GCNNNNNNNGC	3 cut(s)	70, 143, 152
HspAI	GCGC	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	3, 160
LguI	GCTCTTC	1 cut(s)	11
LpnPI	CCDG	4 cut(s)	11, 46, 200, 208
Lsp1109I	GCAGC	1 cut(s)	35
MaeI	CTAG	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	2 cut(s)	5, 162
MboI	GATC	2 cut(s)	3, 160
MboII	GAAGA	2 cut(s)	28, 41
MluCI	AATT	5 cut(s)	80, 92, 129, 139, 148
MlyI	GAGTC	1 cut(s)	82
MroXI	GAANNNNTTC	1 cut(s)	218
MwoI	GCNNNNNNNGC	3 cut(s)	70, 143, 152
NdeII	GATC	2 cut(s)	3, 160
NmuCI	GTSAC	1 cut(s)	85
PciSI	GCTCTTC	1 cut(s)	11
PdmI	GAANNNNTTC	1 cut(s)	218
PkrI	GCNGC	1 cut(s)	50
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
SapI	GCTCTTC	1 cut(s)	11
SatI	GCNGC	1 cut(s)	49
Sau3AI	GATC	2 cut(s)	3, 160
SchI	GAGTC	1 cut(s)	82
SetI	ASST	3 cut(s)	59, 179, 203
SgeI	CNNG	7 cut(s)	25, 38, 56, 73, 120, 125, 199
SpeI	ACTAGT	1 cut(s)	107
Sse9I	AATT	5 cut(s)	80, 92, 129, 139, 148
SsiI	CCGC	1 cut(s)	71
SspMI	CTAG	1 cut(s)	108
TasI	AATT	5 cut(s)	80, 92, 129, 139, 148
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	1 cut(s)	48
Tsp45I	GTSAC	1 cut(s)	85
XapI	RAATTY	1 cut(s)	148
XmnI	GAANNNNTTC	1 cut(s)	218
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.