Rw7G042180

protease

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
65857635 .. 65862795
5161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G042180.1

Sequence Viewer

Length: 1275 bp
ATGTTTACCAATGATCGGAGACAAGAAGAGCGAACTGGAAGATATGGAACTTCAGGCTGCAATGCCTTCAGGCTAACTCCGCCTACTGAATTGGTGACTCAATTTCAGAGTGCTACTAGTCAAGGACACATTGACTTTATGTTCCATGGCCGTGTGGATCGCATGGCCTCTGTTCAAGTCTTAAACTTTACATCTGAAACAAAAGAGAAAATTGTTGCTAATTTGGCAAATTTTGCTTTTGATCCTTACAACTATACCTATTTGCGCCAGCTCTTAGTTTCTGAAACTAACCACATATTTATCTTAAGTGATACAGATCGGGCCAATGCAGCAATTATCAGTTTATCACTCAGTGTGGTGGTAACCCCCCTTGTTATTCAATGTTTATCAAGCCCAGTTAGAAGCACTGTAAACGAATCGACTGAAAACGGCACCGTTTCGGCGCCAGAGGCTAACATCAATGCGGAGAATGCCAATGCTACGACGGACAAGGACTATCCGAGCGGCGAGTCTCTGGAAGAGCTTCGTCGTCAAGAAGGGAAGCGTCTTCACCGTGACATTGCGTGGCCAGGTAAGTTTGCACCTGCTTGTAGCGAAAAAGAATATTACCTTGCTTCTGCTTGTCAAGAGATTTATGCCCCTCCGAGTGCTTATTTTTCTTTGTTTGGTCTCAGTGTTCAGGCATCATTTGTAAGAGGTGTTCAAATTGGAGTTCAGACACAAGTGGAAAGGATTGGTATATATAAAAGTGCTGGTGACCAACTTGCGTGCACGACCATGTCGGAACAAAATTGTGAGATGCTGACAGCATTGCTCAATAACACATATGGGAACTGGTTGGACATAATTTCTTCTACAAGAGGTAAAAAGAGAGAAGATATTGAGAAGATGTGGAGGGAAATCGAACTTTTGGCTGCATCAAAACCAGTCATTGCATCAATGTCTGATGCGGCAGAAAGTGGAGGATACTATATGGCTATGGCAGCAGATGCCATTGTTGCAGAAAATCTAACCTTAACTGGTTCCATTGGAGTTGTCACAGGTTACACCGGTGGAGCTTGCAAGACCCTTCCCTTCACTGTCAGAACTTTTAAGTGGCATAGGGAGTACTCTGGTTGGAGTCGATCAAACGCTGAAGACACTGCTGCAAGACTTAAAACATTTTCTGATGGAGTTAATGCCCGGATGGACGGAATCATGTTTCAGAGACTGGAGGGAGCTTCTAGTGCCAACCCCATCTTCAATTTGATAAGAGATTACCTTGGTTCCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

424

Amino Acids

46.8

Weight (kDa)

5.47

Isoelectric Point (pI)

45.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S49 PF01343 201 - 296 9.9e-12 Peptidase family S49
Peptidase_S49 PF01343 304 - 348 1e-13 Peptidase family S49
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 592
Acc36I ACCTGC 1 cut(s) 592
AccB1I GGYRCC 2 cut(s) 431, 442
AccBSI CCGCTC 1 cut(s) 504
AciI CCGC 4 cut(s) 80, 464, 504, 950
AclWI GGATC 2 cut(s) 165, 236
AcoI YGGCCR 2 cut(s) 148, 566
AcsI RAATTY 1 cut(s) 229
AcuI CTGAAG 3 cut(s) 36, 52, 1155
AcyI GRCGYC 1 cut(s) 443
AdeI CACNNNGTG 1 cut(s) 353
AfaI GTAC 1 cut(s) 1109
AfiI CCNNNNNNNGG 1 cut(s) 15
AflII CTTAAG 1 cut(s) 304
AgeI ACCGGT 1 cut(s) 1049
AgsI TTSAA 4 cut(s) 176, 380, 704, 1243
AhlI ACTAGT 1 cut(s) 116
AjnI CCWGG 1 cut(s) 568
AjuI GAANNNNNNNTTGG 2 cut(s) 1223, 1255
AluBI AGCT 4 cut(s) 271, 523, 1058, 1220
AluI AGCT 4 cut(s) 271, 523, 1058, 1220
Alw21I GWGCWC 1 cut(s) 773
Alw26I GTCTC 4 cut(s) 13, 516, 674, 1201
Alw44I GTGCAC 1 cut(s) 769
AlwI GGATC 2 cut(s) 165, 236
AlwNI CAGNNNCTG 1 cut(s) 1210
AoxI GGCC 4 cut(s) 148, 165, 321, 566
ApaLI GTGCAC 1 cut(s) 769
ApeKI GCWGC 5 cut(s) 57, 329, 914, 983, 1145
ApoI RAATTY 1 cut(s) 229
AsiGI ACCGGT 1 cut(s) 1049
Asp700I GAANNNNTTC 1 cut(s) 522
AspLEI GCGC 2 cut(s) 267, 445
AspS9I GGNCC 1 cut(s) 321
AsuC2I CCSGG 1 cut(s) 1183
AsuHPI GGTGA 3 cut(s) 106, 542, 767
BaeGI GKGCMC 1 cut(s) 773
BalI TGGCCA 1 cut(s) 568
BanI GGYRCC 2 cut(s) 431, 442
BbsI GAAGAC 2 cut(s) 539, 1143
Bbv12I GWGCWC 1 cut(s) 773
BbvI GCAGC 5 cut(s) 44, 341, 901, 995, 1132
BccI CCATC 3 cut(s) 1163, 1180, 1244
BceAI ACGGC 2 cut(s) 135, 445
BciT130I CCWGG 1 cut(s) 570
BciVI GTATCC 1 cut(s) 959
BcnI CCSGG 1 cut(s) 1183
BcoDI GTCTC 4 cut(s) 13, 516, 674, 1201
BcuI ACTAGT 1 cut(s) 116
BfaI CTAG 2 cut(s) 117, 1224
BfoI RGCGCY 1 cut(s) 446
BfrI CTTAAG 1 cut(s) 304
BfuAI ACCTGC 1 cut(s) 592
BfuI GTATCC 1 cut(s) 959
BisI GCNGC 7 cut(s) 58, 330, 505, 915, 951, 984, 1146
BlsI GCNGC 7 cut(s) 59, 331, 506, 916, 952, 985, 1147
BmcAI AGTACT 1 cut(s) 1109
Bme1390I CCNGG 2 cut(s) 570, 1183
BmgT120I GGNCC 1 cut(s) 321
BmiI GGNNCC 4 cut(s) 433, 444, 1024, 1267
BmrFI CCNGG 2 cut(s) 570, 1183
BmrI ACTGGG 1 cut(s) 389
BmsI GCATC 6 cut(s) 692, 789, 926, 937, 944, 979
BmuI ACTGGG 1 cut(s) 389
BpiI GAAGAC 2 cut(s) 539, 1143
BpmI CTGGAG 1 cut(s) 1232
BpuMI CCSGG 1 cut(s) 1183
BsaBI GATNNNNATC 1 cut(s) 315
BsaHI GRCGYC 1 cut(s) 443
BsaI GGTCTC 1 cut(s) 674
BsaJI CCNNGG 2 cut(s) 145, 1261
BsaWI WCCGGW 1 cut(s) 1049
Bsc4I CCNNNNNNNGG 1 cut(s) 15
Bse118I RCCGGY 1 cut(s) 1049
Bse1I ACTGG 6 cut(s) 40, 395, 839, 926, 1024, 1215
Bse3DI GCAATG 4 cut(s) 67, 558, 809, 930
Bse8I GATNNNNATC 1 cut(s) 315
BseBI CCWGG 1 cut(s) 570
BseDI CCNNGG 2 cut(s) 145, 1261
BseGI GGATG 1 cut(s) 1191
BseJI GATNNNNATC 1 cut(s) 315
BseLI CCNNNNNNNGG 1 cut(s) 15
BseMI GCAATG 4 cut(s) 67, 558, 809, 930
BseMII CTCAG 2 cut(s) 364, 685
BseNI ACTGG 6 cut(s) 40, 395, 839, 926, 1024, 1215
BseSI GKGCMC 1 cut(s) 773
BseXI GCAGC 5 cut(s) 44, 341, 901, 995, 1132
BshFI GGCC 4 cut(s) 150, 167, 323, 568
BshNI GGYRCC 2 cut(s) 431, 442
BshTI ACCGGT 1 cut(s) 1049
BsiHKAI GWGCWC 1 cut(s) 773
BsiSI CCGG 2 cut(s) 1050, 1183
BslI CCNNNNNNNGG 1 cut(s) 15
BsmAI GTCTC 4 cut(s) 13, 516, 674, 1201
BsmI GAATGC 1 cut(s) 475
BsnI GGCC 4 cut(s) 150, 167, 323, 568
Bso31I GGTCTC 1 cut(s) 674
Bsp1286I GDGCHC 1 cut(s) 773
Bsp143I GATC 5 cut(s) 13, 157, 241, 316, 1124
Bsp19I CCATGG 1 cut(s) 145
BspACI CCGC 4 cut(s) 80, 464, 504, 950
BspANI GGCC 4 cut(s) 150, 167, 323, 568
BspCNI CTCAG 2 cut(s) 363, 684
BspLI GGNNCC 4 cut(s) 433, 444, 1024, 1267
BspMI ACCTGC 1 cut(s) 592
BspPI GGATC 2 cut(s) 165, 236
BspQI GCTCTTC 2 cut(s) 21, 513
BspT107I GGYRCC 2 cut(s) 431, 442
BspTI CTTAAG 1 cut(s) 304
BspTNI GGTCTC 1 cut(s) 674
BsrBI CCGCTC 1 cut(s) 504
BsrDI GCAATG 4 cut(s) 67, 558, 809, 930
BsrFI RCCGGY 1 cut(s) 1049
BsrI ACTGG 6 cut(s) 40, 395, 839, 926, 1024, 1215
BssAI RCCGGY 1 cut(s) 1049
BssECI CCNNGG 2 cut(s) 145, 1261
BssMI GATC 5 cut(s) 13, 157, 241, 316, 1124
BssNI GRCGYC 1 cut(s) 443
BssT1I CCWWGG 2 cut(s) 145, 1261
Bst2UI CCWGG 1 cut(s) 570
Bst4CI ACNGT 4 cut(s) 409, 436, 554, 1081
Bst6I CTCTTC 2 cut(s) 21, 513
BstACI GRCGYC 1 cut(s) 443
BstAFI CTTAAG 1 cut(s) 304
BstAPI GCANNNNNTGC 2 cut(s) 233, 989
BstC8I GCNNGC 3 cut(s) 269, 769, 1060
BstDEI CTNAG 3 cut(s) 274, 350, 671
BstDSI CCRYGG 1 cut(s) 145
BstEII GGTNACC 2 cut(s) 361, 755
BstF5I GGATG 1 cut(s) 1191
BstH2I RGCGCY 1 cut(s) 446
BstHHI GCGC 2 cut(s) 267, 445
BstKTI GATC 5 cut(s) 16, 160, 244, 319, 1127
BstMAI GTCTC 4 cut(s) 13, 516, 674, 1201
BstMBI GATC 5 cut(s) 13, 157, 241, 316, 1124
BstNI CCWGG 1 cut(s) 570
BstPI GGTNACC 2 cut(s) 361, 755
BstSCI CCNGG 2 cut(s) 568, 1181
BstSLI GKGCMC 1 cut(s) 773
BstV1I GCAGC 5 cut(s) 44, 341, 901, 995, 1132
BstV2I GAAGAC 2 cut(s) 539, 1143
BsuI GTATCC 1 cut(s) 959
BsuRI GGCC 4 cut(s) 150, 167, 323, 568
BtgI CCRYGG 1 cut(s) 145
BtsCI GGATG 1 cut(s) 1191
BtsI GCAGTG 1 cut(s) 1140
BtsIMutI CAGTG 5 cut(s) 358, 405, 679, 1077, 1140
BveI ACCTGC 1 cut(s) 592
Cac8I GCNNGC 3 cut(s) 269, 769, 1060
CaiI CAGNNNCTG 1 cut(s) 1210
CfoI GCGC 2 cut(s) 267, 445
Cfr10I RCCGGY 1 cut(s) 1049
Cfr13I GGNCC 1 cut(s) 321
CseI GACGC 1 cut(s) 533
Csp6I GTAC 1 cut(s) 1108
CspAI ACCGGT 1 cut(s) 1049
CviAII CATG 4 cut(s) 146, 163, 778, 1198
CviQI GTAC 1 cut(s) 1108
DdeI CTNAG 3 cut(s) 274, 350, 671
DinI GGCGCC 1 cut(s) 444
DpnI GATC 5 cut(s) 15, 159, 243, 318, 1126
DpnII GATC 5 cut(s) 13, 157, 241, 316, 1124
DraIII CACNNNGTG 1 cut(s) 353
EaeI YGGCCR 2 cut(s) 148, 566
Eam1104I CTCTTC 2 cut(s) 21, 513
EarI CTCTTC 2 cut(s) 21, 513
EciI GGCGGA 1 cut(s) 69
Eco130I CCWWGG 2 cut(s) 145, 1261
Eco31I GGTCTC 1 cut(s) 674
Eco57I CTGAAG 3 cut(s) 36, 52, 1155
Eco91I GGTNACC 2 cut(s) 361, 755
EcoO65I GGTNACC 2 cut(s) 361, 755
EcoRII CCWGG 1 cut(s) 568
EcoT14I CCWWGG 2 cut(s) 145, 1261
EgeI GGCGCC 1 cut(s) 444
EheI GGCGCC 1 cut(s) 444
ErhI CCWWGG 2 cut(s) 145, 1261
FaeI CATG 4 cut(s) 149, 166, 781, 1201
FatI CATG 4 cut(s) 145, 162, 777, 1197
FauNDI CATATG 1 cut(s) 826
Fnu4HI GCNGC 7 cut(s) 58, 330, 505, 915, 951, 984, 1146
FokI GGATG 1 cut(s) 1198
Fsp4HI GCNGC 7 cut(s) 58, 330, 505, 915, 951, 984, 1146
FspBI CTAG 2 cut(s) 117, 1224
GlaI GCGC 2 cut(s) 266, 444
GluI GCNGC 7 cut(s) 58, 330, 505, 915, 951, 984, 1146
GsuI CTGGAG 1 cut(s) 1232
HaeII RGCGCY 1 cut(s) 446
HaeIII GGCC 4 cut(s) 150, 167, 323, 568
HapII CCGG 2 cut(s) 1050, 1183
HgaI GACGC 1 cut(s) 533
HhaI GCGC 2 cut(s) 267, 445
Hin1I GRCGYC 1 cut(s) 443
Hin1II CATG 4 cut(s) 149, 166, 781, 1201
Hin6I GCGC 2 cut(s) 265, 443
HinP1I GCGC 2 cut(s) 265, 443
HinfI GANTC 5 cut(s) 97, 416, 509, 1120, 1194
HpaII CCGG 2 cut(s) 1050, 1183
HphI GGTGA 3 cut(s) 106, 542, 767
Hpy166II GTNNAC 3 cut(s) 6, 412, 771
Hpy188III TCNNGA 3 cut(s) 515, 533, 626
Hpy8I GTNNAC 3 cut(s) 6, 412, 771
Hpy99I CGWCG 2 cut(s) 487, 531
HpyAV CCTTC 4 cut(s) 76, 530, 1079, 1084
HpyCH4III ACNGT 4 cut(s) 409, 436, 554, 1081
HpyCH4V TGCA 9 cut(s) 60, 329, 581, 771, 917, 935, 1001, 1062, 1148
HpyF3I CTNAG 3 cut(s) 274, 350, 671
Hsp92I GRCGYC 1 cut(s) 443
Hsp92II CATG 4 cut(s) 149, 166, 781, 1201
HspAI GCGC 2 cut(s) 265, 443
KasI GGCGCC 1 cut(s) 442
Kzo9I GATC 5 cut(s) 13, 157, 241, 316, 1124
LguI GCTCTTC 2 cut(s) 21, 513
LmnI GCTCC 2 cut(s) 1055, 1217
Lsp1109I GCAGC 5 cut(s) 44, 341, 901, 995, 1132
LweI GCATC 6 cut(s) 692, 789, 926, 937, 944, 979
MaeI CTAG 2 cut(s) 117, 1224
MaeIII GTNAC 6 cut(s) 94, 361, 554, 755, 1036, 1043
MalI GATC 5 cut(s) 15, 159, 243, 318, 1126
MbiI CCGCTC 1 cut(s) 504
MboI GATC 5 cut(s) 13, 157, 241, 316, 1124
MboII GAAGA 9 cut(s) 38, 51, 530, 539, 843, 887, 898, 1148, 1231
MhlI GDGCHC 1 cut(s) 773
MlsI TGGCCA 1 cut(s) 568
MluNI TGGCCA 1 cut(s) 568
Mly113I GGCGCC 1 cut(s) 443
MlyI GAGTC 3 cut(s) 91, 518, 1129
MmeI TCCRAC 3 cut(s) 762, 819, 1097
MnlI CCTC 8 cut(s) 178, 442, 651, 689, 854, 888, 956, 1207
Mox20I TGGCCA 1 cut(s) 568
MroXI GAANNNNTTC 1 cut(s) 522
MscI TGGCCA 1 cut(s) 568
MseI TTAA 6 cut(s) 182, 305, 1016, 1092, 1155, 1176
MslI CAYNNNNRTG 2 cut(s) 150, 776
Msp20I TGGCCA 1 cut(s) 568
MspCI CTTAAG 1 cut(s) 304
MspI CCGG 2 cut(s) 1050, 1183
MspR9I CCNGG 2 cut(s) 570, 1183
Mva1269I GAATGC 1 cut(s) 475
MvaI CCWGG 1 cut(s) 570
NarI GGCGCC 1 cut(s) 443
NciI CCSGG 1 cut(s) 1183
NcoI CCATGG 1 cut(s) 145
NdeI CATATG 1 cut(s) 826
NdeII GATC 5 cut(s) 13, 157, 241, 316, 1124
NlaIII CATG 4 cut(s) 149, 166, 781, 1201
NlaIV GGNNCC 4 cut(s) 433, 444, 1024, 1267
NmuCI GTSAC 4 cut(s) 94, 554, 755, 1036
PaqCI CACCTGC 1 cut(s) 592
PciSI GCTCTTC 2 cut(s) 21, 513
PctI GAATGC 1 cut(s) 475
PdmI GAANNNNTTC 1 cut(s) 522
PfeI GAWTC 2 cut(s) 416, 1194
PflFI GACNNNGTC 1 cut(s) 778
PinAI ACCGGT 1 cut(s) 1049
PkrI GCNGC 7 cut(s) 59, 331, 506, 916, 952, 985, 1147
PleI GAGTC 3 cut(s) 91, 517, 1128
PluTI GGCGCC 1 cut(s) 446
PpsI GAGTC 3 cut(s) 91, 517, 1128
Psp6I CCWGG 1 cut(s) 568
PspEI GGTNACC 2 cut(s) 361, 755
PspGI CCWGG 1 cut(s) 568
PspN4I GGNNCC 4 cut(s) 433, 444, 1024, 1267
PspPI GGNCC 1 cut(s) 321
PsrI GAACNNNNNNTAC 2 cut(s) 684, 716
PstNI CAGNNNCTG 1 cut(s) 1210
PsyI GACNNNGTC 1 cut(s) 778
RsaI GTAC 1 cut(s) 1109
RsaNI GTAC 1 cut(s) 1108
RseI CAYNNNNRTG 2 cut(s) 150, 776
SapI GCTCTTC 2 cut(s) 21, 513
SaqAI TTAA 6 cut(s) 182, 305, 1016, 1092, 1155, 1176
SatI GCNGC 7 cut(s) 58, 330, 505, 915, 951, 984, 1146
Sau3AI GATC 5 cut(s) 13, 157, 241, 316, 1124
Sau96I GGNCC 1 cut(s) 321
ScaI AGTACT 1 cut(s) 1109
SchI GAGTC 3 cut(s) 91, 518, 1129
ScrFI CCNGG 2 cut(s) 570, 1183
SduI GDGCHC 1 cut(s) 773
SfaNI GCATC 6 cut(s) 692, 789, 926, 937, 944, 979
SfoI GGCGCC 1 cut(s) 444
SgrAI CRCCGGYG 1 cut(s) 1049
SmiMI CAYNNNNRTG 2 cut(s) 150, 776
SmlI CTYRAG 1 cut(s) 304
SmoI CTYRAG 1 cut(s) 304
SpeI ACTAGT 1 cut(s) 116
SsiI CCGC 4 cut(s) 80, 464, 504, 950
SspDI GGCGCC 1 cut(s) 442
SspI AATATT 1 cut(s) 605
SspMI CTAG 2 cut(s) 117, 1224
StyD4I CCNGG 2 cut(s) 568, 1181
StyI CCWWGG 2 cut(s) 145, 1261
TaaI ACNGT 4 cut(s) 409, 436, 554, 1081
TaqI TCGA 3 cut(s) 419, 903, 1123
TatI WGTACW 1 cut(s) 1107
TauI GCSGC 2 cut(s) 507, 953
TfiI GAWTC 2 cut(s) 416, 1194
Tru1I TTAA 6 cut(s) 182, 305, 1016, 1092, 1155, 1176
Tru9I TTAA 6 cut(s) 182, 305, 1016, 1092, 1155, 1176
TscAI CASTG 5 cut(s) 358, 412, 679, 1084, 1147
TseFI GTSAC 4 cut(s) 94, 554, 755, 1036
TseI GCWGC 5 cut(s) 57, 329, 914, 983, 1145
Tsp45I GTSAC 4 cut(s) 94, 554, 755, 1036
TspGWI ACGGA 2 cut(s) 500, 1206
TspRI CASTG 5 cut(s) 358, 412, 679, 1084, 1147
Tth111I GACNNNGTC 1 cut(s) 778
Vha464I CTTAAG 1 cut(s) 304
VneI GTGCAC 1 cut(s) 769
XapI RAATTY 1 cut(s) 229
XmnI GAANNNNTTC 1 cut(s) 522
XspI CTAG 2 cut(s) 117, 1224
ZrmI AGTACT 1 cut(s) 1109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.