Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006127

Physical Location & Seq

Genomic Coordinates Forward (+)

15525269 .. 15527472

Gene Structure 2204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G143200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGTTTACGAATGAACGGAGGCAAGAAGAGCGAACTGGAAGATCTGGAACTCCAAGGCTGCAATACCTTCAGGAATTGGTTTCTCAATTTCAGAATACAACAGATGATGAAGAGACAAAAGAGAAAATTGTTGCTAATTTGGCCAACTTTGCTTATGATCCTTACAACTACACCTTCTTGCGGCAGCTCAATGTGTTGGAACTTTTTGTGGACTGCATAACGGAACCGAATGAGAAGCTGGTGGAATTTGGTTTAGGAGGAATCTGCAATTGCTGCGCCGATCCAGCAAATGCCGTAATTATCACTCAGTGTGGTGGGATCCCTCTTGTTATTCAATGTTTATCAAGCCCAGTTAGAAACACTGTGAATTATGCAATTGGATCACTTTATTATCTATGCAACGCATCTAACAAGGGGGAGATTATGAAGCCAGAGGTGGTTGATGTCATGAAGAGATATGCTGCAGCTGAAGAAGTGAGTCTCAGTTTCAGTAATCTAGCCAAGGCATTTTTGGACAAACATGTTTCTGAAACTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0016020 GO:0016342 GO:0019897 GO:0019898 GO:0019899 GO:0019902 GO:0019903 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045294 GO:0045296 GO:0050839 GO:0071944 GO:0098796 GO:0098797

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

180

Amino Acids

20.02

Weight (kDa)

4.8

Isoelectric Point (pI)

40.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37290 AT5G37290 AT5G37290
fragaria_vesca	FvH4_5g26310 FvH4_5g27560 FvH4_5g27560
malus_domestica	MD09G1253300.v1.1
prunus_persica	Prupe.3G143200_v2.0.a1 Prupe.3G143200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0218931
rosa_laevigata	RLG00000000573 RLG00000002316 RLG00000014261
rosa_multiflora	Rmu_sc0003823.1_g000009
rosa_roxburghii	Rroxscaffold_3G00240300
rosa_rugosa	Rorug07G0179900 Rorug07G0180000 Rorug07G0180100 Rorug07G0344700
rosa_samantha	Rh7AG323200 Rh7AG499200 Rh7BG314200 Rh7CG339900 Rh7DG320300
rosa_wichuraiana	Rw6G011510 Rw7G027390 Rw7G042180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	181
AclWI	GGATC	5 cut(s)	152, 275, 313, 326, 388
AcoI	YGGCCR	1 cut(s)	141
AcsI	RAATTY	1 cut(s)	245
AcuI	CTGAAG	2 cut(s)	53, 489
AdeI	CACNNNGTG	1 cut(s)	309
AfiI	CCNNNNNNNGG	1 cut(s)	180
AflIII	ACRYGT	1 cut(s)	520
AgsI	TTSAA	1 cut(s)	335
AluBI	AGCT	3 cut(s)	187, 238, 467
AluI	AGCT	3 cut(s)	187, 238, 467
Alw26I	GTCTC	2 cut(s)	107, 485
AlwI	GGATC	5 cut(s)	152, 275, 313, 326, 388
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	5 cut(s)	58, 184, 273, 461, 464
ApoI	RAATTY	1 cut(s)	245
AspLEI	GCGC	1 cut(s)	278
BalI	TGGCCA	1 cut(s)	143
BamHI	GGATCC	1 cut(s)	318
BbvI	GCAGC	5 cut(s)	45, 196, 260, 448, 476
BceAI	ACGGC	1 cut(s)	278
BcoDI	GTCTC	2 cut(s)	107, 485
BfaI	CTAG	1 cut(s)	497
BfmI	CTRYAG	1 cut(s)	462
BglII	AGATCT	1 cut(s)	41
BisI	GCNGC	6 cut(s)	59, 182, 185, 274, 462, 465
BlsI	GCNGC	6 cut(s)	60, 183, 186, 275, 463, 466
BmiI	GGNNCC	2 cut(s)	225, 320
BmrI	ACTGGG	1 cut(s)	344
BmsI	GCATC	1 cut(s)	413
BmuI	ACTGGG	1 cut(s)	344
BsaJI	CCNNGG	2 cut(s)	53, 501
Bsc4I	CCNNNNNNNGG	1 cut(s)	180
Bse1I	ACTGG	2 cut(s)	40, 350
BseDI	CCNNGG	2 cut(s)	53, 501
BseLI	CCNNNNNNNGG	1 cut(s)	180
BseMII	CTCAG	2 cut(s)	320, 496
BseNI	ACTGG	2 cut(s)	40, 350
BseXI	GCAGC	5 cut(s)	45, 196, 260, 448, 476
BshFI	GGCC	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	180
BsmAI	GTCTC	2 cut(s)	107, 485
BsnI	GGCC	1 cut(s)	143
Bsp143I	GATC	5 cut(s)	41, 157, 280, 318, 380
BspACI	CCGC	1 cut(s)	181
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	2 cut(s)	319, 495
BspHI	TCATGA	1 cut(s)	447
BspLI	GGNNCC	2 cut(s)	225, 320
BspMAI	CTGCAG	1 cut(s)	466
BspPI	GGATC	5 cut(s)	152, 275, 313, 326, 388
BspQI	GCTCTTC	1 cut(s)	21
BsrI	ACTGG	2 cut(s)	40, 350
BssECI	CCNNGG	2 cut(s)	53, 501
BssMI	GATC	5 cut(s)	41, 157, 280, 318, 380
BssT1I	CCWWGG	2 cut(s)	53, 501
Bst4CI	ACNGT	1 cut(s)	364
Bst6I	CTCTTC	3 cut(s)	21, 105, 446
BstAPI	GCANNNNNTGC	1 cut(s)	273
BstDEI	CTNAG	3 cut(s)	306, 482, 537
BstHHI	GCGC	1 cut(s)	278
BstKTI	GATC	5 cut(s)	44, 160, 283, 321, 383
BstMAI	GTCTC	2 cut(s)	107, 485
BstMBI	GATC	5 cut(s)	41, 157, 280, 318, 380
BstMWI	GCNNNNNNNGC	5 cut(s)	28, 140, 149, 273, 284
BstNSI	RCATGY	1 cut(s)	524
BstSFI	CTRYAG	1 cut(s)	462
BstV1I	GCAGC	5 cut(s)	45, 196, 260, 448, 476
BstX2I	RGATCY	2 cut(s)	41, 318
BstYI	RGATCY	2 cut(s)	41, 318
BsuRI	GGCC	1 cut(s)	143
BtsIMutI	CAGTG	2 cut(s)	314, 360
CciI	TCATGA	1 cut(s)	447
CfoI	GCGC	1 cut(s)	278
CviAII	CATG	2 cut(s)	448, 521
CviJI	RGCY	8 cut(s)	58, 143, 187, 238, 348, 430, 467, 500
CviKI_1	RGCY	8 cut(s)	58, 143, 187, 238, 348, 430, 467, 500
DdeI	CTNAG	3 cut(s)	306, 482, 537
DpnI	GATC	5 cut(s)	43, 159, 282, 320, 382
DpnII	GATC	5 cut(s)	41, 157, 280, 318, 380
DraIII	CACNNNGTG	1 cut(s)	309
EaeI	YGGCCR	1 cut(s)	141
Eam1104I	CTCTTC	3 cut(s)	21, 105, 446
EarI	CTCTTC	3 cut(s)	21, 105, 446
Eco130I	CCWWGG	2 cut(s)	53, 501
Eco57I	CTGAAG	2 cut(s)	53, 489
EcoT14I	CCWWGG	2 cut(s)	53, 501
ErhI	CCWWGG	2 cut(s)	53, 501
FaeI	CATG	2 cut(s)	451, 524
FaiI	YATR	8 cut(s)	156, 218, 372, 397, 425, 449, 459, 522
FatI	CATG	2 cut(s)	447, 520
Fnu4HI	GCNGC	6 cut(s)	59, 182, 185, 274, 462, 465
Fsp4HI	GCNGC	6 cut(s)	59, 182, 185, 274, 462, 465
FspBI	CTAG	1 cut(s)	497
GlaI	GCGC	1 cut(s)	277
GluI	GCNGC	6 cut(s)	59, 182, 185, 274, 462, 465
HaeIII	GGCC	1 cut(s)	143
HhaI	GCGC	1 cut(s)	278
Hin1II	CATG	2 cut(s)	451, 524
Hin6I	GCGC	1 cut(s)	276
HinP1I	GCGC	1 cut(s)	276
HinfI	GANTC	2 cut(s)	261, 478
Hpy166II	GTNNAC	2 cut(s)	6, 211
Hpy188I	TCNGA	2 cut(s)	93, 529
Hpy188III	TCNNGA	3 cut(s)	45, 71, 448
Hpy8I	GTNNAC	2 cut(s)	6, 211
HpyAV	CCTTC	2 cut(s)	77, 184
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4V	TGCA	6 cut(s)	61, 216, 267, 374, 399, 464
HpyF10VI	GCNNNNNNNGC	5 cut(s)	28, 140, 149, 273, 284
HpyF3I	CTNAG	3 cut(s)	306, 482, 537
Hsp92II	CATG	2 cut(s)	451, 524
HspAI	GCGC	1 cut(s)	276
Kzo9I	GATC	5 cut(s)	41, 157, 280, 318, 380
LguI	GCTCTTC	1 cut(s)	21
LpnPI	CCDG	7 cut(s)	21, 30, 56, 224, 297, 363, 444
Lsp1109I	GCAGC	5 cut(s)	45, 196, 260, 448, 476
LweI	GCATC	1 cut(s)	413
MaeI	CTAG	1 cut(s)	497
MalI	GATC	5 cut(s)	43, 159, 282, 320, 382
MboI	GATC	5 cut(s)	41, 157, 280, 318, 380
MboII	GAAGA	5 cut(s)	38, 51, 122, 463, 482
MfeI	CAATTG	2 cut(s)	268, 375
MflI	RGATCY	2 cut(s)	41, 318
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	9 cut(s)	74, 86, 126, 136, 245, 268, 297, 367, 375
MluNI	TGGCCA	1 cut(s)	143
MlyI	GAGTC	1 cut(s)	487
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	4 cut(s)	12, 251, 333, 427
Mox20I	TGGCCA	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	143
Msp20I	TGGCCA	1 cut(s)	143
MspA1I	CMGCKG	1 cut(s)	467
MunI	CAATTG	2 cut(s)	268, 375
MwoI	GCNNNNNNNGC	5 cut(s)	28, 140, 149, 273, 284
NdeII	GATC	5 cut(s)	41, 157, 280, 318, 380
NlaIII	CATG	2 cut(s)	451, 524
NlaIV	GGNNCC	2 cut(s)	225, 320
NspI	RCATGY	1 cut(s)	524
PagI	TCATGA	1 cut(s)	447
PciI	ACATGT	1 cut(s)	520
PciSI	GCTCTTC	1 cut(s)	21
PfeI	GAWTC	1 cut(s)	261
PkrI	GCNGC	6 cut(s)	60, 183, 186, 275, 463, 466
PleI	GAGTC	1 cut(s)	486
PpsI	GAGTC	1 cut(s)	486
PscI	ACATGT	1 cut(s)	520
PspN4I	GGNNCC	2 cut(s)	225, 320
PstI	CTGCAG	1 cut(s)	466
PsuI	RGATCY	2 cut(s)	41, 318
PvuII	CAGCTG	1 cut(s)	467
SapI	GCTCTTC	1 cut(s)	21
SatI	GCNGC	6 cut(s)	59, 182, 185, 274, 462, 465
Sau3AI	GATC	5 cut(s)	41, 157, 280, 318, 380
SchI	GAGTC	1 cut(s)	487
SetI	ASST	6 cut(s)	69, 176, 189, 240, 438, 469
SfaNI	GCATC	1 cut(s)	413
SfcI	CTRYAG	1 cut(s)	462
Sse9I	AATT	9 cut(s)	74, 86, 126, 136, 245, 268, 297, 367, 375
SsiI	CCGC	1 cut(s)	181
SspMI	CTAG	1 cut(s)	497
StyI	CCWWGG	2 cut(s)	53, 501
TaaI	ACNGT	1 cut(s)	364
TasI	AATT	9 cut(s)	74, 86, 126, 136, 245, 268, 297, 367, 375
TauI	GCSGC	1 cut(s)	184
TfiI	GAWTC	1 cut(s)	261
TscAI	CASTG	2 cut(s)	314, 367
TseI	GCWGC	5 cut(s)	58, 184, 273, 461, 464
TspDTI	ATGAA	4 cut(s)	27, 123, 440, 464
TspGWI	ACGGA	2 cut(s)	31, 236
TspRI	CASTG	2 cut(s)	314, 367
XapI	RAATTY	1 cut(s)	245
XceI	RCATGY	1 cut(s)	524
XcmI	CCANNNNNNNNNTGG	1 cut(s)	508
XspI	CTAG	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.