Rorug07G0179900

Armadillo repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0006127
Physical Location & Seq
Forward (+)
14989142 .. 14991435
2294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0179900.1

Sequence Viewer

Length: 1161 bp
ATGGTTGATCCTCTGGTTGCTAGGTGCCTTTACTCTGGCAAAGGTTATATGATTCCTTTGAATCAATGCATGAGCTACTCTGAGTTGTATGAAGACATTTTCCGTACATTCCAGTTGTTGCCAAGTGATATTATTGAGCTTCAGTATTCAGTTCCAGGTTGTGAAGTTTGTTTTCTTCGTAACAATCGTGATTTCCAGATGCTGTTTTGCTCTGCTAGAATACATAGGTTAGAGTGTGTCGATATTTCAGTTTTAAAGATTGGGGGAGGTTGTAGGAGAACTTGTTCTGTGGATAGTGGGTCGGAAGTGATTGATGAAGATGATTATTTGGGTGATGCATTCAGGACTGAAGTTCACAAGACGTATTTGTCTGATGAGTGGAGTTCTTATATTCATCATGTCGGGGATAAGTTTCATGGTGCTGCTGAGCTCCGTGAGAAGCTCAGGAAGTATGCAATTGCAGTTGGTTTCGAGTTTGTTTTGCTGAGAAATGATTTGGACCGTATTCATGCAGTCTGTGCAAATGTTGGAACCGAAGGATGTCAGTGGCATCTTCGTGCTTTTTCATCATCTGCCAATGGTTGCCTTTACATAACAGAGTTGAATAATATTCACACTTGCAAGGGTGTAGTTAGGACTCAAAAGAACAAGCTTTTGGGATCCAAGGTTGTCAAGACTTGCATTGCTGCTGATGTTAGCTATAATCTTTCATTGACGCCAAGGGAGATTATGAGCAAGTTCAAATCAACTTATGGGTTTGATATTTCCTACAAGGTTGCCTTGAAAGCAAAGCATCGGGCTAAGGAAGCGATTTATGGTTCCGATGCAGACACGTTTAGCAAGTTATCTTGGTATAAGGAAGCTGTTTTGCAGAGTAATCCCGGCTCTTCTTTTGTGTTGGAAGTTGAACCATCGACAAATCGTTTTCAGAGGCTTTTCGTAGCTTACGGAGGTTGTGTAGAAGGGTTTAAATTCTGTTTGCCTGTGTTGTATGTTGATGGAACGTTTGAGCAGTTGGTGGTGCCGATATTATTGACCCTTTTCTTGCTGAATTGCCTGTGGAAAATTGGTGCCGTGCATTTTATACTAGTTGCCGATATGGAATTATGGCTAATGGGATTGCTGAATCATTTAACTCTTGGATTGCAATTGAGCGTTTGA

Protein Analysis

386

Amino Acids

43.59

Weight (kDa)

6.6

Isoelectric Point (pI)

34.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 133 - 194 4e-09 MuDR family transposase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 367
AccB1I GGYRCC 3 cut(s) 24, 1021, 1070
AclI AACGTT 1 cut(s) 1004
AclWI GGATC 3 cut(s) 2, 654, 667
AcsI RAATTY 1 cut(s) 971
AcuI CTGAAG 2 cut(s) 125, 369
AcyI GRCGYC 1 cut(s) 716
AfaI GTAC 1 cut(s) 106
AflIII ACRYGT 1 cut(s) 831
AgsI TTSAA 5 cut(s) 61, 604, 742, 784, 908
AhlI ACTAGT 1 cut(s) 1087
AjnI CCWGG 1 cut(s) 154
AjuI GAANNNNNNNTTGG 2 cut(s) 638, 670
AloI GAACNNNNNNTCC 2 cut(s) 268, 300
AluBI AGCT 8 cut(s) 75, 139, 430, 442, 652, 699, 863, 944
AluI AGCT 8 cut(s) 75, 139, 430, 442, 652, 699, 863, 944
Alw21I GWGCWC 1 cut(s) 432
AlwI GGATC 3 cut(s) 2, 654, 667
AlwNI CAGNNNCTG 1 cut(s) 202
ApeKI GCWGC 2 cut(s) 422, 686
ApoI RAATTY 1 cut(s) 971
Asp700I GAANNNNTTC 1 cut(s) 283
AspS9I GGNCC 1 cut(s) 499
AsuC2I CCSGG 1 cut(s) 882
AsuHPI GGTGA 1 cut(s) 344
AvaII GGWCC 1 cut(s) 499
BamHI GGATCC 1 cut(s) 659
BanI GGYRCC 3 cut(s) 24, 1021, 1070
BanII GRGCYC 1 cut(s) 432
BbsI GAAGAC 1 cut(s) 99
Bbv12I GWGCWC 1 cut(s) 432
BbvI GCAGC 2 cut(s) 409, 673
BccI CCATC 2 cut(s) 919, 992
BceAI ACGGC 1 cut(s) 1058
BciT130I CCWGG 1 cut(s) 156
BcnI CCSGG 1 cut(s) 882
BcuI ACTAGT 1 cut(s) 1087
BfaI CTAG 3 cut(s) 21, 216, 1088
BisI GCNGC 2 cut(s) 423, 687
BlpI GCTNAGC 1 cut(s) 426
BlsI GCNGC 2 cut(s) 424, 688
Bme1390I CCNGG 2 cut(s) 156, 882
Bme18I GGWCC 1 cut(s) 499
BmgT120I GGNCC 1 cut(s) 499
BmiI GGNNCC 6 cut(s) 26, 532, 661, 820, 1023, 1072
BmrFI CCNGG 2 cut(s) 156, 882
BmsI GCATC 5 cut(s) 189, 325, 559, 802, 814
BpiI GAAGAC 1 cut(s) 99
Bpu10I CCTNAGC 2 cut(s) 443, 801
Bpu1102I GCTNAGC 1 cut(s) 426
BpuMI CCSGG 1 cut(s) 882
BsaHI GRCGYC 1 cut(s) 716
BsaJI CCNNGG 2 cut(s) 663, 719
BsaXI ACNNNNNCTCC 4 cut(s) 268, 298, 942, 972
Bse1I ACTGG 1 cut(s) 112
Bse3DI GCAATG 1 cut(s) 681
BseBI CCWGG 1 cut(s) 156
BseDI CCNNGG 2 cut(s) 663, 719
BseGI GGATG 1 cut(s) 545
BseMI GCAATG 1 cut(s) 681
BseMII CTCAG 4 cut(s) 72, 417, 457, 476
BseNI ACTGG 1 cut(s) 112
BseXI GCAGC 2 cut(s) 409, 673
BshNI GGYRCC 3 cut(s) 24, 1021, 1070
BsiHKAI GWGCWC 1 cut(s) 432
BsiSI CCGG 1 cut(s) 882
BsmI GAATGC 1 cut(s) 338
Bsp1286I GDGCHC 1 cut(s) 432
Bsp143I GATC 2 cut(s) 7, 659
Bsp1720I GCTNAGC 1 cut(s) 426
BspCNI CTCAG 4 cut(s) 73, 418, 456, 477
BspLI GGNNCC 6 cut(s) 26, 532, 661, 820, 1023, 1072
BspPI GGATC 3 cut(s) 2, 654, 667
BspQI GCTCTTC 1 cut(s) 892
BspT107I GGYRCC 3 cut(s) 24, 1021, 1070
BsrDI GCAATG 1 cut(s) 681
BsrI ACTGG 1 cut(s) 112
BssECI CCNNGG 2 cut(s) 663, 719
BssMI GATC 2 cut(s) 7, 659
BssNI GRCGYC 1 cut(s) 716
BssT1I CCWWGG 2 cut(s) 663, 719
Bst2UI CCWGG 1 cut(s) 156
Bst4CI ACNGT 1 cut(s) 503
Bst6I CTCTTC 1 cut(s) 892
BstACI GRCGYC 1 cut(s) 716
BstAPI GCANNNNNTGC 1 cut(s) 518
BstDEI CTNAG 5 cut(s) 81, 426, 443, 485, 801
BstF5I GGATG 1 cut(s) 545
BstKTI GATC 2 cut(s) 10, 662
BstMBI GATC 2 cut(s) 7, 659
BstMWI GCNNNNNNNGC 3 cut(s) 518, 785, 806
BstNI CCWGG 1 cut(s) 156
BstSCI CCNGG 2 cut(s) 154, 880
BstV1I GCAGC 2 cut(s) 409, 673
BstV2I GAAGAC 1 cut(s) 99
BstX2I RGATCY 1 cut(s) 659
BstYI RGATCY 1 cut(s) 659
BtsCI GGATG 1 cut(s) 545
BtsIMutI CAGTG 1 cut(s) 551
CaiI CAGNNNCTG 1 cut(s) 202
Cfr13I GGNCC 1 cut(s) 499
CseI GACGC 1 cut(s) 724
Csp6I GTAC 1 cut(s) 105
CviAII CATG 4 cut(s) 70, 398, 416, 509
CviQI GTAC 1 cut(s) 105
DdeI CTNAG 5 cut(s) 81, 426, 443, 485, 801
DpnI GATC 2 cut(s) 9, 661
DpnII GATC 2 cut(s) 7, 659
DraI TTTAAA 2 cut(s) 255, 970
DrdI GACNNNNNNGTC 1 cut(s) 367
DseDI GACNNNNNNGTC 1 cut(s) 367
Eam1104I CTCTTC 1 cut(s) 892
EarI CTCTTC 1 cut(s) 892
Ecl136II GAGCTC 1 cut(s) 430
Eco130I CCWWGG 2 cut(s) 663, 719
Eco24I GRGCYC 1 cut(s) 432
Eco47I GGWCC 1 cut(s) 499
Eco53kI GAGCTC 1 cut(s) 430
Eco57I CTGAAG 2 cut(s) 125, 369
EcoICRI GAGCTC 1 cut(s) 430
EcoRII CCWGG 1 cut(s) 154
EcoT14I CCWWGG 2 cut(s) 663, 719
EcoT22I ATGCAT 2 cut(s) 71, 340
EcoT38I GRGCYC 1 cut(s) 432
ErhI CCWWGG 2 cut(s) 663, 719
FaeI CATG 4 cut(s) 73, 401, 419, 512
FalI AAGNNNNNCTT 2 cut(s) 764, 796
FatI CATG 4 cut(s) 69, 397, 415, 508
Fnu4HI GCNGC 2 cut(s) 423, 687
FokI GGATG 1 cut(s) 552
FriOI GRGCYC 1 cut(s) 432
Fsp4HI GCNGC 2 cut(s) 423, 687
FspBI CTAG 3 cut(s) 21, 216, 1088
GluI GCNGC 2 cut(s) 423, 687
HapII CCGG 1 cut(s) 882
HgaI GACGC 1 cut(s) 724
Hin1I GRCGYC 1 cut(s) 716
Hin1II CATG 4 cut(s) 73, 401, 419, 512
HindIII AAGCTT 1 cut(s) 650
HinfI GANTC 4 cut(s) 52, 61, 637, 1126
HpaII CCGG 1 cut(s) 882
HphI GGTGA 1 cut(s) 344
Hpy166II GTNNAC 1 cut(s) 355
Hpy188I TCNGA 5 cut(s) 82, 304, 373, 823, 930
Hpy188III TCNNGA 5 cut(s) 188, 196, 343, 445, 673
Hpy8I GTNNAC 1 cut(s) 355
HpyAV CCTTC 2 cut(s) 530, 956
HpyCH4III ACNGT 1 cut(s) 503
HpyCH4IV ACGT 3 cut(s) 362, 833, 1004
HpyF10VI GCNNNNNNNGC 3 cut(s) 518, 785, 806
HpyF3I CTNAG 5 cut(s) 81, 426, 443, 485, 801
HpySE526I ACGT 3 cut(s) 362, 833, 1004
Hsp92I GRCGYC 1 cut(s) 716
Hsp92II CATG 4 cut(s) 73, 401, 419, 512
Kzo9I GATC 2 cut(s) 7, 659
LguI GCTCTTC 1 cut(s) 892
LmnI GCTCC 1 cut(s) 435
Lsp1109I GCAGC 2 cut(s) 409, 673
LweI GCATC 5 cut(s) 189, 325, 559, 802, 814
MaeI CTAG 3 cut(s) 21, 216, 1088
MaeII ACGT 3 cut(s) 362, 833, 1004
MaeIII GTNAC 1 cut(s) 179
MalI GATC 2 cut(s) 9, 661
MboI GATC 2 cut(s) 7, 659
MboII GAAGA 5 cut(s) 104, 167, 329, 545, 879
MfeI CAATTG 2 cut(s) 456, 1148
MflI RGATCY 1 cut(s) 659
MhlI GDGCHC 1 cut(s) 432
MluCI AATT 6 cut(s) 456, 971, 1051, 1065, 1103, 1148
MlyI GAGTC 1 cut(s) 631
MmeI TCCRAC 3 cut(s) 282, 508, 879
MnlI CCTC 4 cut(s) 21, 260, 924, 944
Mph1103I ATGCAT 2 cut(s) 71, 340
MroXI GAANNNNTTC 1 cut(s) 283
MseI TTAA 3 cut(s) 254, 969, 1133
MslI CAYNNNNRTG 1 cut(s) 555
MspI CCGG 1 cut(s) 882
MspR9I CCNGG 2 cut(s) 156, 882
MunI CAATTG 2 cut(s) 456, 1148
Mva1269I GAATGC 1 cut(s) 338
MvaI CCWGG 1 cut(s) 156
MwoI GCNNNNNNNGC 3 cut(s) 518, 785, 806
NciI CCSGG 1 cut(s) 882
NdeII GATC 2 cut(s) 7, 659
NlaIII CATG 4 cut(s) 73, 401, 419, 512
NlaIV GGNNCC 6 cut(s) 26, 532, 661, 820, 1023, 1072
NsiI ATGCAT 2 cut(s) 71, 340
PciSI GCTCTTC 1 cut(s) 892
PcsI WCGNNNNNNNCGW 1 cut(s) 184
PctI GAATGC 1 cut(s) 338
PdmI GAANNNNTTC 1 cut(s) 283
PfeI GAWTC 3 cut(s) 52, 61, 1126
PkrI GCNGC 2 cut(s) 424, 688
PleI GAGTC 1 cut(s) 631
PpsI GAGTC 1 cut(s) 631
Psp124BI GAGCTC 1 cut(s) 432
Psp1406I AACGTT 1 cut(s) 1004
Psp6I CCWGG 1 cut(s) 154
PspGI CCWGG 1 cut(s) 154
PspN4I GGNNCC 6 cut(s) 26, 532, 661, 820, 1023, 1072
PspPI GGNCC 1 cut(s) 499
PstNI CAGNNNCTG 1 cut(s) 202
PsuI RGATCY 1 cut(s) 659
RsaI GTAC 1 cut(s) 106
RsaNI GTAC 1 cut(s) 105
RseI CAYNNNNRTG 1 cut(s) 555
SacI GAGCTC 1 cut(s) 432
SapI GCTCTTC 1 cut(s) 892
SaqAI TTAA 3 cut(s) 254, 969, 1133
SatI GCNGC 2 cut(s) 423, 687
Sau3AI GATC 2 cut(s) 7, 659
Sau96I GGNCC 1 cut(s) 499
SchI GAGTC 1 cut(s) 631
ScrFI CCNGG 2 cut(s) 156, 882
SduI GDGCHC 1 cut(s) 432
SfaNI GCATC 5 cut(s) 189, 325, 559, 802, 814
SinI GGWCC 1 cut(s) 499
SmiMI CAYNNNNRTG 1 cut(s) 555
SpeI ACTAGT 1 cut(s) 1087
Sse9I AATT 6 cut(s) 456, 971, 1051, 1065, 1103, 1148
SspI AATATT 1 cut(s) 610
SspMI CTAG 3 cut(s) 21, 216, 1088
SstI GAGCTC 1 cut(s) 432
StyD4I CCNGG 2 cut(s) 154, 880
StyI CCWWGG 2 cut(s) 663, 719
TaaI ACNGT 1 cut(s) 503
TaiI ACGT 3 cut(s) 365, 836, 1007
TaqI TCGA 3 cut(s) 240, 471, 914
TasI AATT 6 cut(s) 456, 971, 1051, 1065, 1103, 1148
TfiI GAWTC 3 cut(s) 52, 61, 1126
Tru1I TTAA 3 cut(s) 254, 969, 1133
Tru9I TTAA 3 cut(s) 254, 969, 1133
TscAI CASTG 1 cut(s) 551
TseI GCWGC 2 cut(s) 422, 686
TspDTI ATGAA 7 cut(s) 105, 330, 383, 404, 497, 555, 699
TspGWI ACGGA 3 cut(s) 92, 422, 963
TspRI CASTG 1 cut(s) 551
VpaK11BI GGWCC 1 cut(s) 499
XapI RAATTY 1 cut(s) 971
XmnI GAANNNNTTC 1 cut(s) 283
XspI CTAG 3 cut(s) 21, 216, 1088
Zsp2I ATGCAT 2 cut(s) 71, 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.