Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000512

Physical Location & Seq

Genomic Coordinates Forward (+)

38247956 .. 38252840

Gene Structure 4885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0344700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGATTCGGAGGAAACTAACTGGAGCCTCTTCTTCGTCCTCCTCACCACTCATGGCTCCTTACTCCTCTCTCCTCCTCCGTCCTCAACCTCACCCCTTCTCTCTCTCCACCATCAACCCTAACCCTAACCCTAACCCTAATCTCATCAACCGCTACACCTTACTCCCTCTCCGCACCGTAAACCTCAAGTCCTCTCTCCCGCGCTCTTCATCTGACCCCGACACCAATCGAACGGCGGCGTCATCGGCTCCACCTCCACCTCTTCCGACGACGAAGAAGTCGTTTGCTGTTGCGACGGGGGAGTTGTTCTTGGGCCTGGCGTCTAGGATCATCAAGCGGCGCAATGGAGGCCCAGACCGTGAGGCGGCGGCGGCCTCCGTCGCCATGTTTGAGAGCTCCGGCAAGTTCTCCGATGAGAGAATTGGGAAGGTGATTGAGGATGAGCTTCAGCCGGAGGTCGTTTGGGAGCAGCGCGTGAAGGATGTGGAGGCTGAGAAAGAGAGGCGCGTGATTACAAGTCCCGGCTTTAGTTTCTCCGCTGCGGGACTTCTTTTCCCTTATCATCTAGGTGCTGCTCAGTTCTTGATTGAGAATGGCTATATCAAGGAAACCACTCCATTAGCTGGTTCCTCTGCAGGTGCCATTGTCTGTGCTGTGATTGCCTCTGGAGCAAGTATGGCAGAGGCCTTACAAGCTACTAAAATTCTGGCTGAAGATTGCCGGAACAGAGGGACAGCTTTTCGACTTGGGGCTGTTCTTCGAGATGTTCTCCAAAAGTTTTTGCCTGAGGATGCTCATATTAGGTCCAATGGGAGGGTTAGAGTTGCTGTAACACAGCTCCTATGGAGACCAAGAGGTTTATTGGTGGATCAGTTTGACTCCAAGGAAGATCTCATTAATGCGGTATCTTGCACCAAGACCAGCAACAATGTTCCGGAATCGTCTTTGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0016020 GO:0016342 GO:0019897 GO:0019898 GO:0019899 GO:0019902 GO:0019903 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045294 GO:0045296 GO:0050839 GO:0071944 GO:0098796 GO:0098797

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

317

Amino Acids

34.28

Weight (kDa)

9.51

Isoelectric Point (pI)

50.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Patatin	PF01734	177 - 305	5.1e-11	Patatin-like phospholipase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000512)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica	MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica	Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis	pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis	RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata	RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora	Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa	Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha	Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	626
AasI	GACNNNNNNGTC	1 cut(s)	277
Acc36I	ACCTGC	1 cut(s)	626
AccB1I	GGYRCC	1 cut(s)	638
AccB7I	CCANNNNNTGG	1 cut(s)	623
AccII	CGCG	3 cut(s)	202, 474, 507
AccIII	TCCGGA	1 cut(s)	934
AclWI	GGATC	2 cut(s)	335, 876
AcsI	RAATTY	1 cut(s)	702
AcuI	CTGAAG	2 cut(s)	431, 732
AcyI	GRCGYC	2 cut(s)	239, 320
AfiI	CCNNNNNNNGG	3 cut(s)	364, 623, 813
AjnI	CCWGG	1 cut(s)	315
AluBI	AGCT	6 cut(s)	396, 445, 623, 695, 737, 838
AluI	AGCT	6 cut(s)	396, 445, 623, 695, 737, 838
Alw21I	GWGCWC	1 cut(s)	398
Alw26I	GTCTC	1 cut(s)	841
AlwI	GGATC	2 cut(s)	335, 876
Aor13HI	TCCGGA	1 cut(s)	934
AoxI	GGCC	4 cut(s)	313, 349, 372, 684
ApeKI	GCWGC	3 cut(s)	469, 539, 572
ApoI	RAATTY	1 cut(s)	702
AseI	ATTAAT	1 cut(s)	897
AspLEI	GCGC	4 cut(s)	204, 342, 474, 507
AspS9I	GGNCC	3 cut(s)	313, 350, 804
AsuC2I	CCSGG	1 cut(s)	522
AsuHPI	GGTGA	3 cut(s)	36, 83, 442
AvaII	GGWCC	1 cut(s)	804
AxyI	CCTNAGG	1 cut(s)	786
BanI	GGYRCC	1 cut(s)	638
BanII	GRGCYC	1 cut(s)	398
Bbv12I	GWGCWC	1 cut(s)	398
BbvI	GCAGC	3 cut(s)	481, 526, 559
BccI	CCATC	1 cut(s)	119
BceAI	ACGGC	1 cut(s)	249
BciT130I	CCWGG	1 cut(s)	317
BcnI	CCSGG	1 cut(s)	522
BcoDI	GTCTC	1 cut(s)	841
BfaI	CTAG	2 cut(s)	324, 566
BfmI	CTRYAG	1 cut(s)	633
BfuAI	ACCTGC	1 cut(s)	626
BglII	AGATCT	1 cut(s)	889
BisI	GCNGC	8 cut(s)	237, 338, 366, 369, 372, 470, 540, 573
BlsI	GCNGC	8 cut(s)	238, 339, 367, 370, 373, 471, 541, 574
Bme1390I	CCNGG	2 cut(s)	317, 522
Bme18I	GGWCC	1 cut(s)	804
BmgT120I	GGNCC	3 cut(s)	313, 350, 804
BmiI	GGNNCC	5 cut(s)	25, 57, 249, 628, 640
BmrFI	CCNGG	2 cut(s)	317, 522
BmsI	GCATC	1 cut(s)	781
BplI	GAGNNNNNCTC	2 cut(s)	753, 785
BpmI	CTGGAG	2 cut(s)	42, 687
BpuEI	CTTGAG	1 cut(s)	170
BpuMI	CCSGG	1 cut(s)	522
BsaHI	GRCGYC	2 cut(s)	239, 320
BsaI	GGTCTC	1 cut(s)	841
BsaJI	CCNNGG	1 cut(s)	882
BsaWI	WCCGGW	1 cut(s)	934
BsaXI	ACNNNNNCTCC	2 cut(s)	153, 183
Bsc4I	CCNNNNNNNGG	3 cut(s)	364, 623, 813
Bse1I	ACTGG	1 cut(s)	25
Bse21I	CCTNAGG	1 cut(s)	786
Bse3DI	GCAATG	1 cut(s)	349
BseAI	TCCGGA	1 cut(s)	934
BseBI	CCWGG	1 cut(s)	317
BseDI	CCNNGG	1 cut(s)	882
BseGI	GGATG	3 cut(s)	445, 487, 796
BseLI	CCNNNNNNNGG	3 cut(s)	364, 623, 813
BseMI	GCAATG	1 cut(s)	349
BseMII	CTCAG	3 cut(s)	483, 590, 777
BseNI	ACTGG	1 cut(s)	25
BseRI	GAGGAG	4 cut(s)	31, 55, 62, 65
BseXI	GCAGC	3 cut(s)	481, 526, 559
Bsh1236I	CGCG	3 cut(s)	202, 474, 507
BshFI	GGCC	4 cut(s)	315, 351, 374, 686
BshNI	GGYRCC	1 cut(s)	638
BsiHKAI	GWGCWC	1 cut(s)	398
BsiSI	CCGG	5 cut(s)	399, 452, 522, 721, 935
BslFI	GGGAC	3 cut(s)	504, 558, 745
BslI	CCNNNNNNNGG	3 cut(s)	364, 623, 813
BsmAI	GTCTC	1 cut(s)	841
BsmFI	GGGAC	3 cut(s)	504, 558, 745
BsnI	GGCC	4 cut(s)	315, 351, 374, 686
Bso31I	GGTCTC	1 cut(s)	841
Bsp1286I	GDGCHC	1 cut(s)	398
Bsp13I	TCCGGA	1 cut(s)	934
Bsp143I	GATC	3 cut(s)	327, 868, 889
BspANI	GGCC	4 cut(s)	315, 351, 374, 686
BspCNI	CTCAG	3 cut(s)	484, 589, 778
BspEI	TCCGGA	1 cut(s)	934
BspFNI	CGCG	3 cut(s)	202, 474, 507
BspLI	GGNNCC	5 cut(s)	25, 57, 249, 628, 640
BspMAI	CTGCAG	1 cut(s)	637
BspMI	ACCTGC	1 cut(s)	626
BspPI	GGATC	2 cut(s)	335, 876
BspQI	GCTCTTC	1 cut(s)	211
BspT107I	GGYRCC	1 cut(s)	638
BspTNI	GGTCTC	1 cut(s)	841
BsrDI	GCAATG	1 cut(s)	349
BsrI	ACTGG	1 cut(s)	25
BssECI	CCNNGG	1 cut(s)	882
BssMI	GATC	3 cut(s)	327, 868, 889
BssNI	GRCGYC	2 cut(s)	239, 320
BssT1I	CCWWGG	1 cut(s)	882
Bst2UI	CCWGG	1 cut(s)	317
Bst4CI	ACNGT	2 cut(s)	178, 359
Bst6I	CTCTTC	3 cut(s)	34, 211, 267
BstACI	GRCGYC	2 cut(s)	239, 320
BstDEI	CTNAG	3 cut(s)	492, 576, 786
BstF5I	GGATG	3 cut(s)	445, 487, 796
BstFNI	CGCG	3 cut(s)	202, 474, 507
BstHHI	GCGC	4 cut(s)	204, 342, 474, 507
BstKTI	GATC	3 cut(s)	330, 871, 892
BstMAI	GTCTC	1 cut(s)	841
BstMBI	GATC	3 cut(s)	327, 868, 889
BstMWI	GCNNNNNNNGC	8 cut(s)	245, 348, 371, 380, 659, 668, 677, 692
BstNI	CCWGG	1 cut(s)	317
BstSCI	CCNGG	2 cut(s)	315, 520
BstSFI	CTRYAG	1 cut(s)	633
BstUI	CGCG	3 cut(s)	202, 474, 507
BstV1I	GCAGC	3 cut(s)	481, 526, 559
BstX2I	RGATCY	1 cut(s)	889
BstYI	RGATCY	1 cut(s)	889
Bsu36I	CCTNAGG	1 cut(s)	786
BsuRI	GGCC	4 cut(s)	315, 351, 374, 686
BtsCI	GGATG	3 cut(s)	445, 487, 796
BveI	ACCTGC	1 cut(s)	626
CfoI	GCGC	4 cut(s)	204, 342, 474, 507
Cfr13I	GGNCC	3 cut(s)	313, 350, 804
CseI	GACGC	2 cut(s)	228, 309
CviAII	CATG	2 cut(s)	52, 385
DdeI	CTNAG	3 cut(s)	492, 576, 786
DpnI	GATC	3 cut(s)	329, 870, 891
DpnII	GATC	3 cut(s)	327, 868, 889
DrdI	GACNNNNNNGTC	1 cut(s)	277
DseDI	GACNNNNNNGTC	1 cut(s)	277
Eam1104I	CTCTTC	3 cut(s)	34, 211, 267
EarI	CTCTTC	3 cut(s)	34, 211, 267
Ecl136II	GAGCTC	1 cut(s)	396
Eco130I	CCWWGG	1 cut(s)	882
Eco147I	AGGCCT	1 cut(s)	686
Eco24I	GRGCYC	1 cut(s)	398
Eco31I	GGTCTC	1 cut(s)	841
Eco47I	GGWCC	1 cut(s)	804
Eco53kI	GAGCTC	1 cut(s)	396
Eco57I	CTGAAG	2 cut(s)	431, 732
Eco81I	CCTNAGG	1 cut(s)	786
EcoICRI	GAGCTC	1 cut(s)	396
EcoRII	CCWGG	1 cut(s)	315
EcoT14I	CCWWGG	1 cut(s)	882
EcoT38I	GRGCYC	1 cut(s)	398
ErhI	CCWWGG	1 cut(s)	882
FaeI	CATG	2 cut(s)	55, 388
FaiI	YATR	6 cut(s)	53, 386, 600, 677, 798, 844
FaqI	GGGAC	3 cut(s)	504, 558, 745
FatI	CATG	2 cut(s)	51, 384
FauI	CCCGC	2 cut(s)	207, 535
Fnu4HI	GCNGC	8 cut(s)	237, 338, 366, 369, 372, 470, 540, 573
FokI	GGATG	3 cut(s)	452, 494, 803
FriOI	GRGCYC	1 cut(s)	398
Fsp4HI	GCNGC	8 cut(s)	237, 338, 366, 369, 372, 470, 540, 573
FspBI	CTAG	2 cut(s)	324, 566
GlaI	GCGC	4 cut(s)	203, 341, 473, 506
GluI	GCNGC	8 cut(s)	237, 338, 366, 369, 372, 470, 540, 573
GsuI	CTGGAG	2 cut(s)	42, 687
HaeIII	GGCC	4 cut(s)	315, 351, 374, 686
HapII	CCGG	5 cut(s)	399, 452, 522, 721, 935
HgaI	GACGC	2 cut(s)	228, 309
HhaI	GCGC	4 cut(s)	204, 342, 474, 507
Hin1I	GRCGYC	2 cut(s)	239, 320
Hin1II	CATG	2 cut(s)	55, 388
Hin6I	GCGC	4 cut(s)	202, 340, 472, 505
HinP1I	GCGC	4 cut(s)	202, 340, 472, 505
HinfI	GANTC	3 cut(s)	4, 878, 938
HpaII	CCGG	5 cut(s)	399, 452, 522, 721, 935
HphI	GGTGA	3 cut(s)	36, 83, 442
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	4 cut(s)	9, 214, 267, 412
Hpy188III	TCNNGA	4 cut(s)	583, 666, 761, 935
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	4 cut(s)	271, 274, 298, 383
HpyAV	CCTTC	3 cut(s)	106, 421, 472
HpyCH4III	ACNGT	2 cut(s)	178, 359
HpyCH4V	TGCA	2 cut(s)	635, 912
HpyF10VI	GCNNNNNNNGC	8 cut(s)	245, 348, 371, 380, 659, 668, 677, 692
HpyF3I	CTNAG	3 cut(s)	492, 576, 786
Hsp92I	GRCGYC	2 cut(s)	239, 320
Hsp92II	CATG	2 cut(s)	55, 388
HspAI	GCGC	4 cut(s)	202, 340, 472, 505
Kpn2I	TCCGGA	1 cut(s)	934
Kzo9I	GATC	3 cut(s)	327, 868, 889
LguI	GCTCTTC	1 cut(s)	211
LmnI	GCTCC	7 cut(s)	23, 61, 253, 401, 466, 668, 843
Lsp1109I	GCAGC	3 cut(s)	481, 526, 559
LweI	GCATC	1 cut(s)	781
MaeI	CTAG	2 cut(s)	324, 566
MaeIII	GTNAC	1 cut(s)	829
MalI	GATC	3 cut(s)	329, 870, 891
MboI	GATC	3 cut(s)	327, 868, 889
MboII	GAAGA	8 cut(s)	21, 24, 198, 254, 286, 725, 749, 899
MflI	RGATCY	1 cut(s)	889
MhlI	GDGCHC	1 cut(s)	398
MluCI	AATT	2 cut(s)	420, 702
MlyI	GAGTC	1 cut(s)	872
MmeI	TCCRAC	1 cut(s)	290
MroI	TCCGGA	1 cut(s)	934
MseI	TTAA	1 cut(s)	897
MslI	CAYNNNNRTG	1 cut(s)	567
MspA1I	CMGCKG	1 cut(s)	539
MspI	CCGG	5 cut(s)	399, 452, 522, 721, 935
MspR9I	CCNGG	2 cut(s)	317, 522
MvaI	CCWGG	1 cut(s)	317
MvnI	CGCG	3 cut(s)	202, 474, 507
MwoI	GCNNNNNNNGC	8 cut(s)	245, 348, 371, 380, 659, 668, 677, 692
NciI	CCSGG	1 cut(s)	522
NdeII	GATC	3 cut(s)	327, 868, 889
NlaIII	CATG	2 cut(s)	55, 388
NlaIV	GGNNCC	5 cut(s)	25, 57, 249, 628, 640
PaqCI	CACCTGC	1 cut(s)	626
PceI	AGGCCT	1 cut(s)	686
PciSI	GCTCTTC	1 cut(s)	211
PcsI	WCGNNNNNNNCGW	1 cut(s)	278
PfeI	GAWTC	2 cut(s)	4, 938
PflMI	CCANNNNNTGG	1 cut(s)	623
PkrI	GCNGC	8 cut(s)	238, 339, 367, 370, 373, 471, 541, 574
PleI	GAGTC	1 cut(s)	872
PpsI	GAGTC	1 cut(s)	872
PshBI	ATTAAT	1 cut(s)	897
Psp124BI	GAGCTC	1 cut(s)	398
Psp6I	CCWGG	1 cut(s)	315
PspGI	CCWGG	1 cut(s)	315
PspN4I	GGNNCC	5 cut(s)	25, 57, 249, 628, 640
PspPI	GGNCC	3 cut(s)	313, 350, 804
PstI	CTGCAG	1 cut(s)	637
PsuI	RGATCY	1 cut(s)	889
RseI	CAYNNNNRTG	1 cut(s)	567
SacI	GAGCTC	1 cut(s)	398
SapI	GCTCTTC	1 cut(s)	211
SaqAI	TTAA	1 cut(s)	897
SatI	GCNGC	8 cut(s)	237, 338, 366, 369, 372, 470, 540, 573
Sau3AI	GATC	3 cut(s)	327, 868, 889
Sau96I	GGNCC	3 cut(s)	313, 350, 804
SchI	GAGTC	1 cut(s)	872
ScrFI	CCNGG	2 cut(s)	317, 522
SduI	GDGCHC	1 cut(s)	398
SfaNI	GCATC	1 cut(s)	781
SfcI	CTRYAG	1 cut(s)	633
SinI	GGWCC	1 cut(s)	804
SmiMI	CAYNNNNRTG	1 cut(s)	567
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	2 cut(s)	420, 702
SseBI	AGGCCT	1 cut(s)	686
SspMI	CTAG	2 cut(s)	324, 566
SstI	GAGCTC	1 cut(s)	398
StuI	AGGCCT	1 cut(s)	686
StyD4I	CCNGG	2 cut(s)	315, 520
StyI	CCWWGG	1 cut(s)	882
TaaI	ACNGT	2 cut(s)	178, 359
TaqI	TCGA	3 cut(s)	229, 742, 760
TasI	AATT	2 cut(s)	420, 702
TauI	GCSGC	5 cut(s)	239, 340, 368, 371, 374
TfiI	GAWTC	2 cut(s)	4, 938
Tru1I	TTAA	1 cut(s)	897
Tru9I	TTAA	1 cut(s)	897
TseI	GCWGC	3 cut(s)	469, 539, 572
TspDTI	ATGAA	1 cut(s)	198
TspGWI	ACGGA	2 cut(s)	68, 367
Van91I	CCANNNNNTGG	1 cut(s)	623
VpaK11BI	GGWCC	1 cut(s)	804
VspI	ATTAAT	1 cut(s)	897
XapI	RAATTY	1 cut(s)	702
XspI	CTAG	2 cut(s)	324, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.