Rmu_sc0013122.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013122.1
OG0000512
Physical Location & Seq
Reverse (-)
16213 .. 16647
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013122.1_g000003.1.cds

Sequence Viewer

Length: 435 bp
atgaagccattattccagaaaatcagcagcctctttaatggtcctcctcctggcagcgaccaagatgtagaagccccaccagacaaagctcaagctactacgtaccgcaacttggattgggcaaagatatttgttgtcttctgcctggcatcagccattgctatagctctgctatcagctcaagtctactctcagctccctctaaccttctacttcctctcattcaccctcattttctcctttacctgtttcttcattgctaaattcattcacttgacccgtccccaaccggctcaactacttgaccgatttggcattttctttggcgtgacagcatttttcatttccattacaattccgtttcctttgtggttcaaatgtaccaccggtctcatctatctgctctcctggcttgcaattctagtttgtaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

16.28

Weight (kDa)

9.0

Isoelectric Point (pI)

30.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 186
AciI CCGC 1 cut(s) 106
AcsI RAATTY 1 cut(s) 263
AfaI GTAC 2 cut(s) 104, 382
AfiI CCNNNNNNNGG 2 cut(s) 50, 112
AgeI ACCGGT 1 cut(s) 386
AgsI TTSAA 1 cut(s) 376
AjnI CCWGG 3 cut(s) 49, 144, 407
AluBI AGCT 5 cut(s) 89, 95, 167, 179, 196
AluI AGCT 5 cut(s) 89, 95, 167, 179, 196
Alw26I GTCTC 1 cut(s) 395
ApeKI GCWGC 2 cut(s) 27, 54
ApoI RAATTY 1 cut(s) 263
AsiGI ACCGGT 1 cut(s) 386
AspS9I GGNCC 1 cut(s) 41
AsuHPI GGTGA 1 cut(s) 217
AvaII GGWCC 1 cut(s) 41
BbsI GAAGAC 1 cut(s) 130
BbvI GCAGC 2 cut(s) 39, 66
BciT130I CCWGG 3 cut(s) 51, 146, 409
BcoDI GTCTC 1 cut(s) 395
BfaI CTAG 1 cut(s) 422
BfmI CTRYAG 1 cut(s) 162
BisI GCNGC 2 cut(s) 28, 55
BlsI GCNGC 2 cut(s) 29, 56
Bme1390I CCNGG 3 cut(s) 51, 146, 409
Bme18I GGWCC 1 cut(s) 41
BmgT120I GGNCC 1 cut(s) 41
BmrFI CCNGG 3 cut(s) 51, 146, 409
BmsI GCATC 1 cut(s) 158
BpiI GAAGAC 1 cut(s) 130
BpuEI CTTGAG 2 cut(s) 75, 165
BsaAI YACGTR 1 cut(s) 102
BsaI GGTCTC 1 cut(s) 395
BsaWI WCCGGW 1 cut(s) 386
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 112
Bse118I RCCGGY 2 cut(s) 289, 386
Bse3DI GCAATG 2 cut(s) 156, 255
BseBI CCWGG 3 cut(s) 51, 146, 409
BseLI CCNNNNNNNGG 2 cut(s) 50, 112
BseMI GCAATG 2 cut(s) 156, 255
BseMII CTCAG 1 cut(s) 206
BseRI GAGGAG 1 cut(s) 36
BseXI GCAGC 2 cut(s) 39, 66
BshTI ACCGGT 1 cut(s) 386
BsiSI CCGG 2 cut(s) 290, 387
BslFI GGGAC 1 cut(s) 267
BslI CCNNNNNNNGG 2 cut(s) 50, 112
BsmAI GTCTC 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 267
Bso31I GGTCTC 1 cut(s) 395
BspACI CCGC 1 cut(s) 106
BspCNI CTCAG 1 cut(s) 205
BspTNI GGTCTC 1 cut(s) 395
BsrDI GCAATG 2 cut(s) 156, 255
BsrFI RCCGGY 2 cut(s) 289, 386
BssAI RCCGGY 2 cut(s) 289, 386
Bst2UI CCWGG 3 cut(s) 51, 146, 409
BstBAI YACGTR 1 cut(s) 102
BstC8I GCNNGC 1 cut(s) 414
BstDEI CTNAG 1 cut(s) 192
BstMAI GTCTC 1 cut(s) 395
BstMWI GCNNNNNNNGC 1 cut(s) 409
BstNI CCWGG 3 cut(s) 51, 146, 409
BstSCI CCNGG 3 cut(s) 49, 144, 407
BstSFI CTRYAG 1 cut(s) 162
BstSNI TACGTA 1 cut(s) 102
BstV1I GCAGC 2 cut(s) 39, 66
BstV2I GAAGAC 1 cut(s) 130
Cac8I GCNNGC 1 cut(s) 414
Cfr10I RCCGGY 2 cut(s) 289, 386
Cfr13I GGNCC 1 cut(s) 41
Csp6I GTAC 2 cut(s) 103, 381
CspAI ACCGGT 1 cut(s) 386
CviQI GTAC 2 cut(s) 103, 381
DdeI CTNAG 1 cut(s) 192
Eco105I TACGTA 1 cut(s) 102
Eco31I GGTCTC 1 cut(s) 395
Eco47I GGWCC 1 cut(s) 41
EcoRII CCWGG 3 cut(s) 49, 144, 407
FaiI YATR 1 cut(s) 164
FaqI GGGAC 1 cut(s) 267
FblI GTMKAC 1 cut(s) 186
Fnu4HI GCNGC 2 cut(s) 28, 55
Fsp4HI GCNGC 2 cut(s) 28, 55
FspBI CTAG 1 cut(s) 422
GluI GCNGC 2 cut(s) 28, 55
HapII CCGG 2 cut(s) 290, 387
HpaII CCGG 2 cut(s) 290, 387
HphI GGTGA 1 cut(s) 217
Hpy166II GTNNAC 1 cut(s) 187
Hpy188III TCNNGA 1 cut(s) 16
Hpy8I GTNNAC 1 cut(s) 187
HpyAV CCTTC 1 cut(s) 217
HpyCH4IV ACGT 1 cut(s) 101
HpyCH4V TGCA 1 cut(s) 416
HpyF10VI GCNNNNNNNGC 1 cut(s) 409
HpyF3I CTNAG 1 cut(s) 192
HpySE526I ACGT 1 cut(s) 101
LmnI GCTCC 1 cut(s) 201
Lsp1109I GCAGC 2 cut(s) 39, 66
LweI GCATC 1 cut(s) 158
MaeI CTAG 1 cut(s) 422
MaeII ACGT 1 cut(s) 101
MaeIII GTNAC 1 cut(s) 328
MboII GAAGA 2 cut(s) 130, 244
MluCI AATT 3 cut(s) 263, 354, 417
MnlI CCTC 6 cut(s) 41, 54, 57, 210, 227, 239
MseI TTAA 1 cut(s) 36
MspI CCGG 2 cut(s) 290, 387
MspR9I CCNGG 3 cut(s) 51, 146, 409
MvaI CCWGG 3 cut(s) 51, 146, 409
MwoI GCNNNNNNNGC 1 cut(s) 409
NmuCI GTSAC 1 cut(s) 328
PinAI ACCGGT 1 cut(s) 386
PkrI GCNGC 2 cut(s) 29, 56
Ppu21I YACGTR 1 cut(s) 102
Psp6I CCWGG 3 cut(s) 49, 144, 407
PspGI CCWGG 3 cut(s) 49, 144, 407
PspPI GGNCC 1 cut(s) 41
RsaI GTAC 2 cut(s) 104, 382
RsaNI GTAC 2 cut(s) 103, 381
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 2 cut(s) 28, 55
Sau96I GGNCC 1 cut(s) 41
ScrFI CCNGG 3 cut(s) 51, 146, 409
SetI ASST 8 cut(s) 91, 97, 104, 169, 181, 198, 209, 248
SfaNI GCATC 1 cut(s) 158
SfcI CTRYAG 1 cut(s) 162
SinI GGWCC 1 cut(s) 41
SmlI CTYRAG 2 cut(s) 90, 180
SmoI CTYRAG 2 cut(s) 90, 180
SnaBI TACGTA 1 cut(s) 102
Sse9I AATT 3 cut(s) 263, 354, 417
SsiI CCGC 1 cut(s) 106
SspMI CTAG 1 cut(s) 422
StyD4I CCNGG 3 cut(s) 49, 144, 407
TaiI ACGT 1 cut(s) 104
TaqII GACCGA 1 cut(s) 321
TasI AATT 3 cut(s) 263, 354, 417
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TseFI GTSAC 1 cut(s) 328
TseI GCWGC 2 cut(s) 27, 54
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 4 cut(s) 17, 244, 256, 331
TspGWI ACGGA 1 cut(s) 348
VpaK11BI GGWCC 1 cut(s) 41
XapI RAATTY 1 cut(s) 263
XmiI GTMKAC 1 cut(s) 186
XspI CTAG 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.