MD03G1009600.v1.1

K homology RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0000512
Physical Location & Seq
Reverse (-)
728827 .. 729345
519 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1009600.v1.1.491

Sequence Viewer

Length: 519 bp
ATGAAGTACTACATTGCTAGTGGTTGTCAGTGCATTCAGGCATTTTTGCAGCAACTACTCAACAAGATATTCATCAGTGCGTTGGATAATGATCTTGACCTGGTAACAATAATAGTACCAGCTGATCAACCACCACCACCAGTGCTGCTGCCAGTCACTCTAGGACTAGGAAGCACAACTGGGCGAAGATTATCGTGGCCTATTGCTTGTCAACGGCCATTGGAATGGCTCTCATTCCATCCAACTTCACTCCAAACAGCTCCCTCTAACATTTTGCTTTCTCGGTCTCGCAATCCTACTTGCCTTTGCTTGTATCGTGGAAGCAAAATTATCCAGCACTCCCAACTCTCCGTGGATAATAATTCATTTCTTCTATTATTTCGGGGTCTTCTTTGGAGTCACTGCCTTGTACATTTCTGTCAAAATCCTATTTCCTCTCTGGTTCAAACCTACGGCCTATATCTCATCTATGTGGCCTCAGGCCTAGTAGTACTATTTTGTCACCACAACAATACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1 SF1-HH

Protein Analysis

173

Amino Acids

19.24

Weight (kDa)

8.69

Isoelectric Point (pI)

45.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 215
AfaI GTAC 4 cut(s) 8, 117, 411, 492
AgsI TTSAA 1 cut(s) 446
AjnI CCWGG 1 cut(s) 99
AluBI AGCT 2 cut(s) 122, 260
AluI AGCT 2 cut(s) 122, 260
Alw26I GTCTC 1 cut(s) 291
AoxI GGCC 5 cut(s) 197, 215, 454, 474, 481
ApeKI GCWGC 3 cut(s) 49, 145, 148
AsuHPI GGTGA 1 cut(s) 494
AxyI CCTNAGG 1 cut(s) 478
BbsI GAAGAC 1 cut(s) 380
BbvI GCAGC 3 cut(s) 61, 132, 135
BccI CCATC 1 cut(s) 246
BceAI ACGGC 2 cut(s) 230, 469
BciT130I CCWGG 1 cut(s) 101
BclI TGATCA 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 291
BfaI CTAG 4 cut(s) 18, 161, 167, 485
BisI GCNGC 3 cut(s) 50, 146, 149
BlsI GCNGC 3 cut(s) 51, 147, 150
BmcAI AGTACT 2 cut(s) 8, 492
Bme1390I CCNGG 1 cut(s) 101
BmrFI CCNGG 1 cut(s) 101
BmrI ACTGGG 1 cut(s) 189
BmuI ACTGGG 1 cut(s) 189
BpiI GAAGAC 1 cut(s) 380
BsaBI GATNNNNATC 2 cut(s) 71, 90
BsaI GGTCTC 1 cut(s) 291
BsaJI CCNNGG 1 cut(s) 351
Bse1I ACTGG 3 cut(s) 140, 152, 184
Bse21I CCTNAGG 1 cut(s) 478
Bse3DI GCAATG 1 cut(s) 12
Bse8I GATNNNNATC 2 cut(s) 71, 90
BseBI CCWGG 1 cut(s) 101
BseDI CCNNGG 1 cut(s) 351
BseGI GGATG 1 cut(s) 238
BseJI GATNNNNATC 2 cut(s) 71, 90
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 492
BseNI ACTGG 3 cut(s) 140, 152, 184
BseXI GCAGC 3 cut(s) 61, 132, 135
BshFI GGCC 5 cut(s) 199, 217, 456, 476, 483
BsmAI GTCTC 1 cut(s) 291
BsmI GAATGC 1 cut(s) 33
BsnI GGCC 5 cut(s) 199, 217, 456, 476, 483
Bso31I GGTCTC 1 cut(s) 291
Bsp1407I TGTACA 1 cut(s) 409
Bsp143I GATC 2 cut(s) 91, 124
BspANI GGCC 5 cut(s) 199, 217, 456, 476, 483
BspCNI CTCAG 1 cut(s) 491
BspTNI GGTCTC 1 cut(s) 291
BsrDI GCAATG 1 cut(s) 12
BsrGI TGTACA 1 cut(s) 409
BsrI ACTGG 3 cut(s) 140, 152, 184
BssECI CCNNGG 1 cut(s) 351
BssMI GATC 2 cut(s) 91, 124
Bst2UI CCWGG 1 cut(s) 101
BstAUI TGTACA 1 cut(s) 409
BstDEI CTNAG 1 cut(s) 478
BstDSI CCRYGG 1 cut(s) 351
BstF5I GGATG 1 cut(s) 238
BstKTI GATC 2 cut(s) 94, 127
BstMAI GTCTC 1 cut(s) 291
BstMBI GATC 2 cut(s) 91, 124
BstNI CCWGG 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 99
BstV1I GCAGC 3 cut(s) 61, 132, 135
BstV2I GAAGAC 1 cut(s) 380
BstXI CCANNNNNNTGG 1 cut(s) 225
Bsu36I CCTNAGG 1 cut(s) 478
BsuRI GGCC 5 cut(s) 199, 217, 456, 476, 483
BtgI CCRYGG 1 cut(s) 351
BtsCI GGATG 1 cut(s) 238
BtsI GCAGTG 1 cut(s) 400
BtsIMutI CAGTG 4 cut(s) 35, 82, 147, 400
CsiI ACCWGGT 1 cut(s) 99
Csp6I GTAC 4 cut(s) 7, 116, 410, 491
CviJI RGCY 8 cut(s) 122, 199, 217, 229, 260, 456, 476, 483
CviKI_1 RGCY 8 cut(s) 122, 199, 217, 229, 260, 456, 476, 483
CviQI GTAC 4 cut(s) 7, 116, 410, 491
DdeI CTNAG 1 cut(s) 478
DpnI GATC 2 cut(s) 93, 126
DpnII GATC 2 cut(s) 91, 124
EaeI YGGCCR 1 cut(s) 215
Eco147I AGGCCT 1 cut(s) 483
Eco31I GGTCTC 1 cut(s) 291
Eco81I CCTNAGG 1 cut(s) 478
EcoRII CCWGG 1 cut(s) 99
FaiI YATR 3 cut(s) 460, 471, 517
FbaI TGATCA 1 cut(s) 124
Fnu4HI GCNGC 3 cut(s) 50, 146, 149
FokI GGATG 1 cut(s) 225
Fsp4HI GCNGC 3 cut(s) 50, 146, 149
FspBI CTAG 4 cut(s) 18, 161, 167, 485
GluI GCNGC 3 cut(s) 50, 146, 149
HaeIII GGCC 5 cut(s) 199, 217, 456, 476, 483
HincII GTYRAC 1 cut(s) 212
HindII GTYRAC 1 cut(s) 212
HinfI GANTC 1 cut(s) 397
HphI GGTGA 1 cut(s) 494
Hpy166II GTNNAC 1 cut(s) 212
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 1 cut(s) 212
HpyCH4V TGCA 2 cut(s) 33, 49
HpyF3I CTNAG 1 cut(s) 478
Ksp22I TGATCA 1 cut(s) 124
Kzo9I GATC 2 cut(s) 91, 124
LmnI GCTCC 1 cut(s) 265
Lsp1109I GCAGC 3 cut(s) 61, 132, 135
MabI ACCWGGT 1 cut(s) 99
MaeI CTAG 4 cut(s) 18, 161, 167, 485
MaeIII GTNAC 4 cut(s) 103, 154, 398, 500
MalI GATC 2 cut(s) 93, 126
MboI GATC 2 cut(s) 91, 124
MboII GAAGA 3 cut(s) 198, 362, 380
MluCI AATT 2 cut(s) 327, 361
MlyI GAGTC 1 cut(s) 406
MmeI TCCRAC 2 cut(s) 63, 266
MnlI CCTC 3 cut(s) 274, 445, 487
MslI CAYNNNNRTG 2 cut(s) 223, 470
MspA1I CMGCKG 1 cut(s) 122
MspR9I CCNGG 1 cut(s) 101
Mva1269I GAATGC 1 cut(s) 33
MvaI CCWGG 1 cut(s) 101
NdeII GATC 2 cut(s) 91, 124
NmuCI GTSAC 3 cut(s) 154, 398, 500
PceI AGGCCT 1 cut(s) 483
PctI GAATGC 1 cut(s) 33
PkrI GCNGC 3 cut(s) 51, 147, 150
PleI GAGTC 1 cut(s) 405
PpsI GAGTC 1 cut(s) 405
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
PvuII CAGCTG 1 cut(s) 122
RsaI GTAC 4 cut(s) 8, 117, 411, 492
RsaNI GTAC 4 cut(s) 7, 116, 410, 491
RseI CAYNNNNRTG 2 cut(s) 223, 470
SatI GCNGC 3 cut(s) 50, 146, 149
Sau3AI GATC 2 cut(s) 91, 124
ScaI AGTACT 2 cut(s) 8, 492
SchI GAGTC 1 cut(s) 406
ScrFI CCNGG 1 cut(s) 101
SetI ASST 4 cut(s) 102, 124, 262, 452
SexAI ACCWGGT 1 cut(s) 99
SmiMI CAYNNNNRTG 2 cut(s) 223, 470
Sse9I AATT 2 cut(s) 327, 361
SseBI AGGCCT 1 cut(s) 483
SspMI CTAG 4 cut(s) 18, 161, 167, 485
StuI AGGCCT 1 cut(s) 483
StyD4I CCNGG 1 cut(s) 99
TaqII GACCGA 1 cut(s) 273
TasI AATT 2 cut(s) 327, 361
TatI WGTACW 3 cut(s) 6, 409, 490
TscAI CASTG 4 cut(s) 35, 82, 147, 407
TseFI GTSAC 3 cut(s) 154, 398, 500
TseI GCWGC 3 cut(s) 49, 145, 148
Tsp45I GTSAC 3 cut(s) 154, 398, 500
TspDTI ATGAA 3 cut(s) 17, 61, 354
TspGWI ACGGA 1 cut(s) 340
TspRI CASTG 4 cut(s) 35, 82, 147, 407
XspI CTAG 4 cut(s) 18, 161, 167, 485
ZrmI AGTACT 2 cut(s) 8, 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.