Prupe.6G011800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000512
Physical Location & Seq
Reverse (-)
851184 .. 851702
519 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G011800.1

Sequence Viewer

Length: 519 bp
ATGAGGAATACTTGCACTGCTTCTTATCAGTCCCTAAAGGCCTCTTTCCATTTACTGCTCCAGAAAATAATATTCATTGTGAGCCGTCTTGATAATCTCGATGACCCAGAAGCTCCAGCTCCAGCAGCAAAACCACAACCATCTGCAACAACAACAGCAGCAGCAGCTAGGAACTTGGATTGGGCAAAGATTGTTGTGGTGTATTGCTTGTCAACAGGAGTTGCCATGGCTCTCATACACACCCAAGTTGACCCCAGCAAGCTCCCTCTAAGCTTTTTCTTTCTCGGACTGGCAGTCCTACTCGCCTTTGCGTGTATCATGGTAAGCAAATTTGTTCAGCACTCCAACTGTCCAAGAATAACAGTTCATCTCTTCCATTTCTTTGGGGTCTTTTTCGCAGTCACCGCCTTCTTCATTTCCATTACAATCCCTTTTCCTCTCTGGTTTAAATGTACTGCATCTGTCATCTATGTGGCCTCAGGCCTTGTAGTCATATTTTGCAATCACTTCTATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

19.0

Weight (kDa)

9.0

Isoelectric Point (pI)

31.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 405
AcsI RAATTY 1 cut(s) 329
AfaI GTAC 1 cut(s) 454
AhdI GACNNNNNGTC 1 cut(s) 293
AluBI AGCT 5 cut(s) 113, 119, 167, 262, 273
AluI AGCT 5 cut(s) 113, 119, 167, 262, 273
AoxI GGCC 3 cut(s) 39, 474, 481
ApeKI GCWGC 4 cut(s) 125, 158, 161, 164
ApoI RAATTY 1 cut(s) 329
AsuHPI GGTGA 1 cut(s) 394
AxyI CCTNAGG 1 cut(s) 478
BbvI GCAGC 4 cut(s) 137, 170, 173, 176
BccI CCATC 1 cut(s) 148
BceAI ACGGC 1 cut(s) 69
BfaI CTAG 1 cut(s) 168
BisI GCNGC 4 cut(s) 126, 159, 162, 165
BlsI GCNGC 4 cut(s) 127, 160, 163, 166
BmeRI GACNNNNNGTC 1 cut(s) 293
BmsI GCATC 1 cut(s) 467
BpmI CTGGAG 3 cut(s) 44, 99, 105
BsaJI CCNNGG 1 cut(s) 225
Bse1I ACTGG 1 cut(s) 294
Bse21I CCTNAGG 1 cut(s) 478
BseDI CCNNGG 1 cut(s) 225
BseMII CTCAG 1 cut(s) 492
BseNI ACTGG 1 cut(s) 294
BseXI GCAGC 4 cut(s) 137, 170, 173, 176
BseYI CCCAGC 1 cut(s) 254
BshFI GGCC 3 cut(s) 41, 476, 483
BslFI GGGAC 1 cut(s) 16
BsmFI GGGAC 1 cut(s) 16
BsnI GGCC 3 cut(s) 41, 476, 483
Bsp19I CCATGG 1 cut(s) 225
BspACI CCGC 1 cut(s) 405
BspANI GGCC 3 cut(s) 41, 476, 483
BspCNI CTCAG 1 cut(s) 491
BsrI ACTGG 1 cut(s) 294
BssECI CCNNGG 1 cut(s) 225
BssT1I CCWWGG 1 cut(s) 225
Bst4CI ACNGT 2 cut(s) 350, 364
Bst6I CTCTTC 1 cut(s) 377
BstC8I GCNNGC 1 cut(s) 260
BstDEI CTNAG 2 cut(s) 269, 478
BstDSI CCRYGG 1 cut(s) 225
BstMWI GCNNNNNNNGC 3 cut(s) 125, 164, 404
BstV1I GCAGC 4 cut(s) 137, 170, 173, 176
BstXI CCANNNNNNTGG 1 cut(s) 383
Bsu36I CCTNAGG 1 cut(s) 478
BsuRI GGCC 3 cut(s) 41, 476, 483
BtgI CCRYGG 1 cut(s) 225
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 15
Cac8I GCNNGC 1 cut(s) 260
Csp6I GTAC 1 cut(s) 453
CviAII CATG 2 cut(s) 226, 319
CviQI GTAC 1 cut(s) 453
DdeI CTNAG 2 cut(s) 269, 478
DraI TTTAAA 1 cut(s) 448
DriI GACNNNNNGTC 1 cut(s) 293
Eam1104I CTCTTC 1 cut(s) 377
Eam1105I GACNNNNNGTC 1 cut(s) 293
EarI CTCTTC 1 cut(s) 377
Eco130I CCWWGG 1 cut(s) 225
Eco147I AGGCCT 2 cut(s) 41, 483
Eco81I CCTNAGG 1 cut(s) 478
EcoT14I CCWWGG 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 2 cut(s) 229, 322
FaiI YATR 6 cut(s) 227, 236, 320, 471, 494, 513
FaqI GGGAC 1 cut(s) 16
FatI CATG 2 cut(s) 225, 318
Fnu4HI GCNGC 4 cut(s) 126, 159, 162, 165
Fsp4HI GCNGC 4 cut(s) 126, 159, 162, 165
FspBI CTAG 1 cut(s) 168
GluI GCNGC 4 cut(s) 126, 159, 162, 165
GsaI CCCAGC 1 cut(s) 258
GsuI CTGGAG 3 cut(s) 44, 99, 105
HaeIII GGCC 3 cut(s) 41, 476, 483
Hin1II CATG 2 cut(s) 229, 322
HincII GTYRAC 2 cut(s) 213, 250
HindII GTYRAC 2 cut(s) 213, 250
HindIII AAGCTT 1 cut(s) 271
HphI GGTGA 1 cut(s) 394
Hpy166II GTNNAC 2 cut(s) 213, 250
Hpy188I TCNGA 1 cut(s) 287
Hpy188III TCNNGA 3 cut(s) 61, 89, 98
Hpy8I GTNNAC 2 cut(s) 213, 250
HpyAV CCTTC 1 cut(s) 418
HpyCH4III ACNGT 2 cut(s) 350, 364
HpyCH4V TGCA 4 cut(s) 15, 146, 458, 501
HpyF10VI GCNNNNNNNGC 3 cut(s) 125, 164, 404
HpyF3I CTNAG 2 cut(s) 269, 478
Hsp92II CATG 2 cut(s) 229, 322
LmnI GCTCC 4 cut(s) 63, 118, 124, 267
LpnPI CCDG 9 cut(s) 74, 120, 129, 135, 201, 268, 275, 427, 465
Lsp1109I GCAGC 4 cut(s) 137, 170, 173, 176
LweI GCATC 1 cut(s) 467
MaeI CTAG 1 cut(s) 168
MaeIII GTNAC 1 cut(s) 400
MboII GAAGA 2 cut(s) 364, 403
MluCI AATT 2 cut(s) 329, 514
MmeI TCCRAC 1 cut(s) 369
MnlI CCTC 4 cut(s) 52, 276, 447, 487
MseI TTAA 2 cut(s) 447, 517
MslI CAYNNNNRTG 1 cut(s) 470
MwoI GCNNNNNNNGC 3 cut(s) 125, 164, 404
NcoI CCATGG 1 cut(s) 225
NlaIII CATG 2 cut(s) 229, 322
NmuCI GTSAC 1 cut(s) 400
PceI AGGCCT 2 cut(s) 41, 483
PkrI GCNGC 4 cut(s) 127, 160, 163, 166
PspFI CCCAGC 1 cut(s) 254
RsaI GTAC 1 cut(s) 454
RsaNI GTAC 1 cut(s) 453
RseI CAYNNNNRTG 1 cut(s) 470
SaqAI TTAA 2 cut(s) 447, 517
SatI GCNGC 4 cut(s) 126, 159, 162, 165
SetI ASST 5 cut(s) 115, 121, 169, 264, 275
SfaNI GCATC 1 cut(s) 467
SmiMI CAYNNNNRTG 1 cut(s) 470
Sse9I AATT 2 cut(s) 329, 514
SseBI AGGCCT 2 cut(s) 41, 483
SsiI CCGC 1 cut(s) 405
SspI AATATT 1 cut(s) 72
SspMI CTAG 1 cut(s) 168
StuI AGGCCT 2 cut(s) 41, 483
StyI CCWWGG 1 cut(s) 225
TaaI ACNGT 2 cut(s) 350, 364
TaqI TCGA 1 cut(s) 99
TasI AATT 2 cut(s) 329, 514
TatI WGTACW 1 cut(s) 452
Tru1I TTAA 2 cut(s) 447, 517
Tru9I TTAA 2 cut(s) 447, 517
TscAI CASTG 1 cut(s) 22
TseFI GTSAC 1 cut(s) 400
TseI GCWGC 4 cut(s) 125, 158, 161, 164
Tsp45I GTSAC 1 cut(s) 400
TspDTI ATGAA 3 cut(s) 64, 356, 403
TspRI CASTG 1 cut(s) 22
XapI RAATTY 1 cut(s) 329
XspI CTAG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.