Rmu_sc0004712.1_g000020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004712.1
OG0000512
Physical Location & Seq
Reverse (-)
78962 .. 79429
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004712.1_g000020.1.cds

Sequence Viewer

Length: 468 bp
atgaatttttctgcggctattaccaaactgctgcagccagttcagaaatttagcccatttcatggtcttccaactcctcgcgacccagaagcagtggtgcccgatcatcaagtaccacggcgccaaaacttggactgggctaagataattgtggtgtttagcttggcatcagcaatcgacatagctctcctatcagtccaagttcactcccaacttcctataatcttctactttctcgagcttgctatcttgcttgcctttacttgtttcttcacaagtaatttggttcattcaaactgtccactagtcgctcaggtgctcgagcgatttggtatcttctttggcgtcagtgccttcttcatatccatcacaattccgtttccggctgtctggttcaaatgcatagcatgtttcatctacgcagtctcatggcttgtgatattcttttgtaattacttatgtgcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.49

Weight (kDa)

7.63

Isoelectric Point (pI)

35.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 97, 120
AccB7I CCANNNNNTGG 2 cut(s) 62, 130
AccII CGCG 1 cut(s) 81
AciI CCGC 1 cut(s) 14
AcsI RAATTY 2 cut(s) 4, 47
AcyI GRCGYC 2 cut(s) 121, 345
AfaI GTAC 1 cut(s) 114
AfiI CCNNNNNNNGG 2 cut(s) 62, 130
AgsI TTSAA 2 cut(s) 294, 397
AhlI ACTAGT 1 cut(s) 304
AluBI AGCT 3 cut(s) 162, 185, 241
AluI AGCT 3 cut(s) 162, 185, 241
Alw21I GWGCWC 1 cut(s) 321
Alw26I GTCTC 1 cut(s) 430
Ama87I CYCGRG 2 cut(s) 236, 320
ApeKI GCWGC 2 cut(s) 31, 34
ApoI RAATTY 2 cut(s) 4, 47
AspLEI GCGC 1 cut(s) 123
AvaI CYCGRG 2 cut(s) 236, 320
BaeGI GKGCMC 1 cut(s) 102
BanI GGYRCC 2 cut(s) 97, 120
BbsI GAAGAC 1 cut(s) 59
Bbv12I GWGCWC 1 cut(s) 321
BbvI GCAGC 2 cut(s) 18, 46
BccI CCATC 1 cut(s) 374
BceAI ACGGC 1 cut(s) 134
BcoDI GTCTC 1 cut(s) 430
BcuI ACTAGT 1 cut(s) 304
BfaI CTAG 1 cut(s) 305
BfmI CTRYAG 1 cut(s) 32
BfoI RGCGCY 1 cut(s) 124
BisI GCNGC 3 cut(s) 15, 32, 35
BlsI GCNGC 3 cut(s) 16, 33, 36
BmeT110I CYCGRG 2 cut(s) 236, 320
BmiI GGNNCC 2 cut(s) 99, 122
BmrI ACTGGG 1 cut(s) 145
BmsI GCATC 1 cut(s) 176
BmuI ACTGGG 1 cut(s) 145
BpiI GAAGAC 1 cut(s) 59
Bpu10I CCTNAGC 1 cut(s) 312
BsaHI GRCGYC 2 cut(s) 121, 345
BsaJI CCNNGG 1 cut(s) 116
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 130
Bse1I ACTGG 2 cut(s) 38, 140
BseDI CCNNGG 1 cut(s) 116
BseLI CCNNNNNNNGG 2 cut(s) 62, 130
BseMII CTCAG 1 cut(s) 326
BseNI ACTGG 2 cut(s) 38, 140
BseRI GAGGAG 1 cut(s) 66
BseSI GKGCMC 1 cut(s) 102
BseXI GCAGC 2 cut(s) 18, 46
Bsh1236I CGCG 1 cut(s) 81
BshNI GGYRCC 2 cut(s) 97, 120
BsiHKAI GWGCWC 1 cut(s) 321
BsiHKCI CYCGRG 2 cut(s) 236, 320
BsiSI CCGG 1 cut(s) 383
BslI CCNNNNNNNGG 2 cut(s) 62, 130
BsmAI GTCTC 1 cut(s) 430
BsoBI CYCGRG 2 cut(s) 236, 320
Bsp1286I GDGCHC 2 cut(s) 102, 321
Bsp143I GATC 1 cut(s) 103
Bsp68I TCGCGA 1 cut(s) 81
BspACI CCGC 1 cut(s) 14
BspCNI CTCAG 1 cut(s) 325
BspFNI CGCG 1 cut(s) 81
BspLI GGNNCC 2 cut(s) 99, 122
BspMAI CTGCAG 1 cut(s) 36
BspT107I GGYRCC 2 cut(s) 97, 120
BsrI ACTGG 2 cut(s) 38, 140
BssECI CCNNGG 1 cut(s) 116
BssMI GATC 1 cut(s) 103
BssNI GRCGYC 2 cut(s) 121, 345
Bst4CI ACNGT 1 cut(s) 299
BstACI GRCGYC 2 cut(s) 121, 345
BstC8I GCNNGC 2 cut(s) 243, 255
BstDEI CTNAG 2 cut(s) 141, 312
BstDSI CCRYGG 1 cut(s) 116
BstFNI CGCG 1 cut(s) 81
BstH2I RGCGCY 1 cut(s) 124
BstHHI GCGC 1 cut(s) 123
BstKTI GATC 1 cut(s) 106
BstMAI GTCTC 1 cut(s) 430
BstMBI GATC 1 cut(s) 103
BstNSI RCATGY 1 cut(s) 411
BstSFI CTRYAG 1 cut(s) 32
BstSLI GKGCMC 1 cut(s) 102
BstUI CGCG 1 cut(s) 81
BstV1I GCAGC 2 cut(s) 18, 46
BstV2I GAAGAC 1 cut(s) 59
BtgI CCRYGG 1 cut(s) 116
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 2 cut(s) 99, 355
BtuMI TCGCGA 1 cut(s) 81
Cac8I GCNNGC 2 cut(s) 243, 255
CfoI GCGC 1 cut(s) 123
CseI GACGC 1 cut(s) 334
Csp6I GTAC 1 cut(s) 113
CviAII CATG 3 cut(s) 62, 408, 429
CviJI RGCY 9 cut(s) 17, 37, 54, 140, 162, 185, 241, 386, 433
CviKI_1 RGCY 9 cut(s) 17, 37, 54, 140, 162, 185, 241, 386, 433
CviQI GTAC 1 cut(s) 113
DdeI CTNAG 2 cut(s) 141, 312
DinI GGCGCC 1 cut(s) 122
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
Eco88I CYCGRG 2 cut(s) 236, 320
EcoT22I ATGCAT 1 cut(s) 404
EgeI GGCGCC 1 cut(s) 122
EheI GGCGCC 1 cut(s) 122
FaeI CATG 3 cut(s) 65, 411, 432
FaiI YATR 8 cut(s) 63, 182, 221, 362, 404, 409, 430, 460
FatI CATG 3 cut(s) 61, 407, 428
Fnu4HI GCNGC 3 cut(s) 15, 32, 35
Fsp4HI GCNGC 3 cut(s) 15, 32, 35
FspBI CTAG 1 cut(s) 305
GlaI GCGC 1 cut(s) 122
GluI GCNGC 3 cut(s) 15, 32, 35
HaeII RGCGCY 1 cut(s) 124
HapII CCGG 1 cut(s) 383
HgaI GACGC 1 cut(s) 334
HhaI GCGC 1 cut(s) 123
Hin1I GRCGYC 2 cut(s) 121, 345
Hin1II CATG 3 cut(s) 65, 411, 432
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
HpaII CCGG 1 cut(s) 383
Hpy166II GTNNAC 2 cut(s) 205, 302
Hpy188I TCNGA 1 cut(s) 45
Hpy188III TCNNGA 2 cut(s) 80, 236
Hpy8I GTNNAC 2 cut(s) 205, 302
HpyAV CCTTC 1 cut(s) 364
HpyCH4III ACNGT 1 cut(s) 299
HpyCH4V TGCA 2 cut(s) 34, 402
HpyF3I CTNAG 2 cut(s) 141, 312
Hsp92I GRCGYC 2 cut(s) 121, 345
Hsp92II CATG 3 cut(s) 65, 411, 432
HspAI GCGC 1 cut(s) 121
KasI GGCGCC 1 cut(s) 120
Kzo9I GATC 1 cut(s) 103
LpnPI CCDG 6 cut(s) 51, 99, 121, 299, 376, 396
Lsp1109I GCAGC 2 cut(s) 18, 46
LweI GCATC 1 cut(s) 176
MaeI CTAG 1 cut(s) 305
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MboII GAAGA 5 cut(s) 59, 217, 262, 328, 349
MhlI GDGCHC 2 cut(s) 102, 321
MluCI AATT 6 cut(s) 4, 47, 147, 280, 372, 451
Mly113I GGCGCC 1 cut(s) 121
MmeI TCCRAC 1 cut(s) 95
MnlI CCTC 1 cut(s) 87
Mph1103I ATGCAT 1 cut(s) 404
MseI TTAA 1 cut(s) 466
MspI CCGG 1 cut(s) 383
MvnI CGCG 1 cut(s) 81
NarI GGCGCC 1 cut(s) 121
NdeII GATC 1 cut(s) 103
NlaIII CATG 3 cut(s) 65, 411, 432
NlaIV GGNNCC 2 cut(s) 99, 122
NruI TCGCGA 1 cut(s) 81
NsiI ATGCAT 1 cut(s) 404
NspI RCATGY 1 cut(s) 411
PaeR7I CTCGAG 2 cut(s) 236, 320
PflMI CCANNNNNTGG 2 cut(s) 62, 130
PkrI GCNGC 3 cut(s) 16, 33, 36
PluTI GGCGCC 1 cut(s) 124
PspN4I GGNNCC 2 cut(s) 99, 122
PspXI VCTCGAGB 1 cut(s) 320
PstI CTGCAG 1 cut(s) 36
RruI TCGCGA 1 cut(s) 81
RsaI GTAC 1 cut(s) 114
RsaNI GTAC 1 cut(s) 113
SaqAI TTAA 1 cut(s) 466
SatI GCNGC 3 cut(s) 15, 32, 35
Sau3AI GATC 1 cut(s) 103
SduI GDGCHC 2 cut(s) 102, 321
SetI ASST 4 cut(s) 164, 187, 243, 318
SfaNI GCATC 1 cut(s) 176
SfcI CTRYAG 1 cut(s) 32
SfoI GGCGCC 1 cut(s) 122
Sfr274I CTCGAG 2 cut(s) 236, 320
SlaI CTCGAG 2 cut(s) 236, 320
SmlI CTYRAG 2 cut(s) 236, 320
SmoI CTYRAG 2 cut(s) 236, 320
SpeI ACTAGT 1 cut(s) 304
Sse9I AATT 6 cut(s) 4, 47, 147, 280, 372, 451
SsiI CCGC 1 cut(s) 14
SspDI GGCGCC 1 cut(s) 120
SspMI CTAG 1 cut(s) 305
TaaI ACNGT 1 cut(s) 299
TaqI TCGA 3 cut(s) 177, 237, 321
TasI AATT 6 cut(s) 4, 47, 147, 280, 372, 451
TauI GCSGC 1 cut(s) 17
Tru1I TTAA 1 cut(s) 466
Tru9I TTAA 1 cut(s) 466
TscAI CASTG 2 cut(s) 99, 355
TseI GCWGC 2 cut(s) 31, 34
TspDTI ATGAA 5 cut(s) 17, 50, 278, 349, 403
TspGWI ACGGA 1 cut(s) 366
TspRI CASTG 2 cut(s) 99, 355
Van91I CCANNNNNTGG 2 cut(s) 62, 130
XapI RAATTY 2 cut(s) 4, 47
XceI RCATGY 1 cut(s) 411
XhoI CTCGAG 2 cut(s) 236, 320
XspI CTAG 1 cut(s) 305
Zsp2I ATGCAT 1 cut(s) 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.