Rh2DG550800

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000512
Physical Location & Seq
Reverse (-)
77940987 .. 77941208
222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG550800.1

Sequence Viewer

Length: 222 bp
ATGGCCTTTACTTCAGCTATCACAAAAGTGCTCCGGCTACTTCAGAAACTTAGTCCATTTGATGCTCCTCCCGACCCAGAAGCAGTGCTGCCTGATCAAGCACCAAAGCACCAACACTTGGACTGGGCAAAGATACTTGTGGTGTTCAGTTTAGCATCAGCAATTGACATAGCTCTCCTATCCGTCCAGATTCACTCCCAGGGTTTCATTCAAGTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

8.0

Weight (kDa)

5.78

Isoelectric Point (pI)

38.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 118
AcuI CTGAAG 1 cut(s) 26
AfiI CCNNNNNNNGG 1 cut(s) 118
AgsI TTSAA 1 cut(s) 212
AjnI CCWGG 1 cut(s) 198
AleI CACNNNNGTG 1 cut(s) 26
AluBI AGCT 2 cut(s) 17, 173
AluI AGCT 2 cut(s) 17, 173
Alw21I GWGCWC 1 cut(s) 33
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 75
BciT130I CCWGG 1 cut(s) 200
BclI TGATCA 1 cut(s) 94
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
Bme1390I CCNGG 1 cut(s) 200
BmrFI CCNGG 1 cut(s) 200
BmrI ACTGGG 1 cut(s) 133
BmsI GCATC 2 cut(s) 52, 164
BmuI ACTGGG 1 cut(s) 133
BsaJI CCNNGG 2 cut(s) 198, 199
Bsc4I CCNNNNNNNGG 1 cut(s) 118
Bse1I ACTGG 1 cut(s) 128
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 2 cut(s) 198, 199
BseLI CCNNNNNNNGG 1 cut(s) 118
BseNI ACTGG 1 cut(s) 128
BseRI GAGGAG 1 cut(s) 57
BseXI GCAGC 1 cut(s) 75
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 33
BsiSI CCGG 1 cut(s) 34
BslI CCNNNNNNNGG 1 cut(s) 118
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 33
Bsp143I GATC 1 cut(s) 94
BspANI GGCC 1 cut(s) 5
BsrI ACTGG 1 cut(s) 128
BssECI CCNNGG 2 cut(s) 198, 199
BssMI GATC 1 cut(s) 94
Bst2UI CCWGG 1 cut(s) 200
BstDEI CTNAG 1 cut(s) 50
BstKTI GATC 1 cut(s) 97
BstMBI GATC 1 cut(s) 94
BstNI CCWGG 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 198
BstV1I GCAGC 1 cut(s) 75
BsuRI GGCC 1 cut(s) 5
BtsI GCAGTG 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 90
CviJI RGCY 4 cut(s) 5, 17, 37, 173
CviKI_1 RGCY 4 cut(s) 5, 17, 37, 173
DdeI CTNAG 1 cut(s) 50
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
Eco57I CTGAAG 1 cut(s) 26
EcoRII CCWGG 1 cut(s) 198
FaiI YATR 1 cut(s) 170
FbaI TGATCA 1 cut(s) 94
Fnu4HI GCNGC 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 89
GluI GCNGC 1 cut(s) 89
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 34
HinfI GANTC 1 cut(s) 190
HpaII CCGG 1 cut(s) 34
Hpy188I TCNGA 1 cut(s) 45
Hpy188III TCNNGA 2 cut(s) 71, 187
HpyF3I CTNAG 1 cut(s) 50
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 1 cut(s) 94
LmnI GCTCC 2 cut(s) 36, 70
LpnPI CCDG 7 cut(s) 47, 90, 105, 109, 185, 200, 212
Lsp1109I GCAGC 1 cut(s) 75
LweI GCATC 2 cut(s) 52, 164
MalI GATC 1 cut(s) 96
MboI GATC 1 cut(s) 94
MfeI CAATTG 1 cut(s) 162
MhlI GDGCHC 1 cut(s) 33
MluCI AATT 1 cut(s) 162
MnlI CCTC 1 cut(s) 78
MslI CAYNNNNRTG 2 cut(s) 26, 212
MspI CCGG 1 cut(s) 34
MspR9I CCNGG 1 cut(s) 200
MunI CAATTG 1 cut(s) 162
MvaI CCWGG 1 cut(s) 200
NdeII GATC 1 cut(s) 94
OliI CACNNNNGTG 1 cut(s) 26
PasI CCCWGGG 1 cut(s) 199
PfeI GAWTC 1 cut(s) 190
PflMI CCANNNNNTGG 1 cut(s) 118
PkrI GCNGC 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
RseI CAYNNNNRTG 2 cut(s) 26, 212
SatI GCNGC 1 cut(s) 89
Sau3AI GATC 1 cut(s) 94
ScrFI CCNGG 1 cut(s) 200
SduI GDGCHC 1 cut(s) 33
SetI ASST 2 cut(s) 19, 175
SfaNI GCATC 2 cut(s) 52, 164
SmiMI CAYNNNNRTG 2 cut(s) 26, 212
Sse9I AATT 1 cut(s) 162
StyD4I CCNGG 1 cut(s) 198
TasI AATT 1 cut(s) 162
TfiI GAWTC 1 cut(s) 190
TscAI CASTG 1 cut(s) 90
TseI GCWGC 1 cut(s) 88
TspDTI ATGAA 1 cut(s) 196
TspGWI ACGGA 1 cut(s) 172
TspRI CASTG 1 cut(s) 90
Van91I CCANNNNNTGG 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.