Rroxscaffold_6G00430000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000512
Physical Location & Seq
Reverse (-)
50167591 .. 50171578
3988 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00430000.1

Sequence Viewer

Length: 651 bp
ATGGGTCTTCGATGCTCGAAGAGCAGGCGAGACTTGGCTTACGATGAGATCGTGTCTCGTCAACTGAGGTGTGGTGGTGAAGGTGTGTCGAGCGAGGAGTACGTGTCTGCTAGAGAAGGTTTTGTGAACGAGAGGTGTGGTGTGGCCGCGAGAGGAGGGCATTATACTATCTTATTTGCCTTCACTTGCTTCGTGCAAGCAATTTCATTCATTCCGGCTTCTCGATCCGGAGTGGCTGCGGTGCTCCGGCGATTTGGCCTCTTTTTTGGAGTAACCGCTTTCTTCATATCCGTCATTATTCCATTTCCTCTGTGGTTCAAATCAACTATCTGCTTCCTCTATGCTCTCTTCTGGTTTACAATCATGATTTGCACTTACCTCGTCCCAAAAATGAGCAACGAATGGTCAAACAACAACAACAAGAAGAAGAAGCGATTCGGAAGAATGAATAAGAATTTGGTGCCGAATGGCCCCCTTATAAAGCTAGGAAGAGAGAAAAGCACATTTGAAAGAGAGAGGGAGGAGAGAGAAAGTGGATGCGGAGGACTCTCTCTCCGTCATCGATCTCCGACCACGGGGTGGGCTCACCGTGGCCACCATATTCTTCGCCTTCCTCTTATGAGTCAATGCCGGGTTGCATCTCGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

216

Amino Acids

24.63

Weight (kDa)

10.29

Isoelectric Point (pI)

62.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 479
AccB1I GGYRCC 1 cut(s) 460
AccB7I CCANNNNNTGG 1 cut(s) 579
AccII CGCG 1 cut(s) 149
AccIII TCCGGA 1 cut(s) 227
AciI CCGC 4 cut(s) 147, 239, 276, 540
AclWI GGATC 1 cut(s) 219
AcoI YGGCCR 2 cut(s) 144, 592
AcsI RAATTY 1 cut(s) 454
AdeI CACNNNGTG 1 cut(s) 579
AfaI GTAC 1 cut(s) 101
AfiI CCNNNNNNNGG 2 cut(s) 575, 579
AflIII ACRYGT 1 cut(s) 102
AgsI TTSAA 2 cut(s) 319, 509
AjuI GAANNNNNNNTTGG 2 cut(s) 440, 472
AluBI AGCT 1 cut(s) 484
AluI AGCT 1 cut(s) 484
Alw21I GWGCWC 1 cut(s) 246
Alw26I GTCTC 2 cut(s) 24, 60
AlwI GGATC 1 cut(s) 219
Aor13HI TCCGGA 1 cut(s) 227
AoxI GGCC 4 cut(s) 144, 256, 469, 592
ApeKI GCWGC 1 cut(s) 236
ApoI RAATTY 1 cut(s) 454
Asp700I GAANNNNTTC 1 cut(s) 434
AspS9I GGNCC 1 cut(s) 470
AsuC2I CCSGG 1 cut(s) 632
AsuHPI GGTGA 2 cut(s) 89, 578
BalI TGGCCA 1 cut(s) 594
BanI GGYRCC 1 cut(s) 460
BanII GRGCYC 1 cut(s) 586
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 1 cut(s) 223
BcgI CGANNNNNNTGC 2 cut(s) 361, 395
BcnI CCSGG 1 cut(s) 632
BcoDI GTCTC 2 cut(s) 24, 60
BfaI CTAG 2 cut(s) 111, 485
BisI GCNGC 2 cut(s) 147, 237
BlsI GCNGC 2 cut(s) 148, 238
Bme1390I CCNGG 1 cut(s) 632
BmgT120I GGNCC 1 cut(s) 470
BmiI GGNNCC 2 cut(s) 462, 472
BmrFI CCNGG 1 cut(s) 632
BmsI GCATC 3 cut(s) 2, 527, 647
BpuMI CCSGG 1 cut(s) 632
Bsa29I ATCGAT 1 cut(s) 562
BsaAI YACGTR 1 cut(s) 103
BsaJI CCNNGG 2 cut(s) 573, 589
BsaWI WCCGGW 1 cut(s) 227
BsaXI ACNNNNNCTCC 4 cut(s) 89, 119, 537, 567
Bsc4I CCNNNNNNNGG 2 cut(s) 575, 579
BseAI TCCGGA 1 cut(s) 227
BseCI ATCGAT 1 cut(s) 562
BseDI CCNNGG 2 cut(s) 573, 589
BseGI GGATG 1 cut(s) 542
BseLI CCNNNNNNNGG 2 cut(s) 575, 579
BseMII CTCAG 1 cut(s) 56
BseRI GAGGAG 3 cut(s) 110, 168, 536
BseXI GCAGC 1 cut(s) 223
Bsh1236I CGCG 1 cut(s) 149
BshFI GGCC 4 cut(s) 146, 258, 471, 594
BshNI GGYRCC 1 cut(s) 460
BshVI ATCGAT 1 cut(s) 562
BsiHKAI GWGCWC 1 cut(s) 246
BsiSI CCGG 4 cut(s) 215, 228, 247, 631
BslFI GGGAC 1 cut(s) 368
BslI CCNNNNNNNGG 2 cut(s) 575, 579
BsmAI GTCTC 2 cut(s) 24, 60
BsmFI GGGAC 1 cut(s) 368
BsnI GGCC 4 cut(s) 146, 258, 471, 594
Bsp1286I GDGCHC 2 cut(s) 246, 586
Bsp13I TCCGGA 1 cut(s) 227
Bsp143I GATC 3 cut(s) 48, 224, 563
BspACI CCGC 4 cut(s) 147, 239, 276, 540
BspANI GGCC 4 cut(s) 146, 258, 471, 594
BspCNI CTCAG 1 cut(s) 57
BspDI ATCGAT 1 cut(s) 562
BspEI TCCGGA 1 cut(s) 227
BspFNI CGCG 1 cut(s) 149
BspHI TCATGA 1 cut(s) 363
BspLI GGNNCC 2 cut(s) 462, 472
BspPI GGATC 1 cut(s) 219
BspQI GCTCTTC 1 cut(s) 14
BspT107I GGYRCC 1 cut(s) 460
BssECI CCNNGG 2 cut(s) 573, 589
BssMI GATC 3 cut(s) 48, 224, 563
Bst4CI ACNGT 1 cut(s) 590
Bst6I CTCTTC 3 cut(s) 14, 353, 484
BstBAI YACGTR 1 cut(s) 103
BstC8I GCNNGC 2 cut(s) 26, 198
BstDEI CTNAG 1 cut(s) 65
BstDSI CCRYGG 2 cut(s) 573, 589
BstF5I GGATG 1 cut(s) 542
BstFNI CGCG 1 cut(s) 149
BstKTI GATC 3 cut(s) 51, 227, 566
BstMAI GTCTC 2 cut(s) 24, 60
BstMBI GATC 3 cut(s) 48, 224, 563
BstMWI GCNNNNNNNGC 1 cut(s) 21
BstSCI CCNGG 1 cut(s) 630
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 1 cut(s) 223
Bsu15I ATCGAT 1 cut(s) 562
BsuRI GGCC 4 cut(s) 146, 258, 471, 594
BsuTUI ATCGAT 1 cut(s) 562
BtgI CCRYGG 2 cut(s) 573, 589
BtsCI GGATG 1 cut(s) 542
Cac8I GCNNGC 2 cut(s) 26, 198
CciI TCATGA 1 cut(s) 363
Cfr13I GGNCC 1 cut(s) 470
ClaI ATCGAT 1 cut(s) 562
Csp6I GTAC 1 cut(s) 100
CviAII CATG 1 cut(s) 364
CviJI RGCY 9 cut(s) 38, 146, 218, 236, 258, 471, 484, 584, 594
CviKI_1 RGCY 9 cut(s) 38, 146, 218, 236, 258, 471, 484, 584, 594
CviQI GTAC 1 cut(s) 100
DdeI CTNAG 1 cut(s) 65
DpnI GATC 3 cut(s) 50, 226, 565
DpnII GATC 3 cut(s) 48, 224, 563
DraIII CACNNNGTG 1 cut(s) 579
EaeI YGGCCR 2 cut(s) 144, 592
Eam1104I CTCTTC 3 cut(s) 14, 353, 484
EarI CTCTTC 3 cut(s) 14, 353, 484
Eco24I GRGCYC 1 cut(s) 586
EcoT38I GRGCYC 1 cut(s) 586
FaeI CATG 1 cut(s) 367
FaiI YATR 7 cut(s) 165, 287, 342, 365, 479, 600, 620
FaqI GGGAC 1 cut(s) 368
FatI CATG 1 cut(s) 363
Fnu4HI GCNGC 2 cut(s) 147, 237
FokI GGATG 1 cut(s) 549
FriOI GRGCYC 1 cut(s) 586
Fsp4HI GCNGC 2 cut(s) 147, 237
FspBI CTAG 2 cut(s) 111, 485
GluI GCNGC 2 cut(s) 147, 237
HaeIII GGCC 4 cut(s) 146, 258, 471, 594
HapII CCGG 4 cut(s) 215, 228, 247, 631
Hin1II CATG 1 cut(s) 367
HincII GTYRAC 1 cut(s) 62
HindII GTYRAC 1 cut(s) 62
HinfI GANTC 3 cut(s) 435, 546, 622
HpaII CCGG 4 cut(s) 215, 228, 247, 631
HphI GGTGA 2 cut(s) 89, 578
Hpy166II GTNNAC 3 cut(s) 62, 127, 357
Hpy188I TCNGA 3 cut(s) 440, 570, 645
Hpy188III TCNNGA 3 cut(s) 222, 228, 364
Hpy8I GTNNAC 3 cut(s) 62, 127, 357
HpyAV CCTTC 4 cut(s) 74, 110, 190, 620
HpyCH4III ACNGT 1 cut(s) 590
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 3 cut(s) 196, 372, 638
HpyF10VI GCNNNNNNNGC 1 cut(s) 21
HpyF3I CTNAG 1 cut(s) 65
HpySE526I ACGT 1 cut(s) 102
Hsp92II CATG 1 cut(s) 367
Kpn2I TCCGGA 1 cut(s) 227
Kzo9I GATC 3 cut(s) 48, 224, 563
LguI GCTCTTC 1 cut(s) 14
LmnI GCTCC 1 cut(s) 249
LpnPI CCDG 6 cut(s) 10, 228, 241, 260, 337, 644
Lsp1109I GCAGC 1 cut(s) 223
LweI GCATC 3 cut(s) 2, 527, 647
MaeI CTAG 2 cut(s) 111, 485
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 1 cut(s) 271
MalI GATC 3 cut(s) 50, 226, 565
MboI GATC 3 cut(s) 48, 224, 563
MboII GAAGA 8 cut(s) 31, 274, 340, 436, 439, 453, 501, 596
MhlI GDGCHC 2 cut(s) 246, 586
MlsI TGGCCA 1 cut(s) 594
MluCI AATT 2 cut(s) 201, 454
MluNI TGGCCA 1 cut(s) 594
MlyI GAGTC 2 cut(s) 540, 631
MmeI TCCRAC 1 cut(s) 593
Mox20I TGGCCA 1 cut(s) 594
MroI TCCGGA 1 cut(s) 227
MroXI GAANNNNTTC 1 cut(s) 434
MscI TGGCCA 1 cut(s) 594
Msp20I TGGCCA 1 cut(s) 594
MspI CCGG 4 cut(s) 215, 228, 247, 631
MspR9I CCNGG 1 cut(s) 632
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 1 cut(s) 21
NciI CCSGG 1 cut(s) 632
NdeII GATC 3 cut(s) 48, 224, 563
NlaIII CATG 1 cut(s) 367
NlaIV GGNNCC 2 cut(s) 462, 472
PagI TCATGA 1 cut(s) 363
PciSI GCTCTTC 1 cut(s) 14
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PdmI GAANNNNTTC 1 cut(s) 434
PfeI GAWTC 1 cut(s) 435
PflMI CCANNNNNTGG 1 cut(s) 579
PkrI GCNGC 2 cut(s) 148, 238
PleI GAGTC 2 cut(s) 540, 630
PpsI GAGTC 2 cut(s) 540, 630
Ppu21I YACGTR 1 cut(s) 103
PsiI TTATAA 1 cut(s) 479
PspN4I GGNNCC 2 cut(s) 462, 472
PspPI GGNCC 1 cut(s) 470
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
SapI GCTCTTC 1 cut(s) 14
SatI GCNGC 2 cut(s) 147, 237
Sau3AI GATC 3 cut(s) 48, 224, 563
Sau96I GGNCC 1 cut(s) 470
SchI GAGTC 2 cut(s) 540, 631
ScrFI CCNGG 1 cut(s) 632
SduI GDGCHC 2 cut(s) 246, 586
SetI ASST 7 cut(s) 71, 85, 105, 121, 137, 381, 486
SfaNI GCATC 3 cut(s) 2, 527, 647
Sse9I AATT 2 cut(s) 201, 454
SsiI CCGC 4 cut(s) 147, 239, 276, 540
SspMI CTAG 2 cut(s) 111, 485
StyD4I CCNGG 1 cut(s) 630
TaaI ACNGT 1 cut(s) 590
TaiI ACGT 1 cut(s) 105
TaqI TCGA 5 cut(s) 10, 17, 89, 223, 562
TasI AATT 2 cut(s) 201, 454
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 1 cut(s) 435
TseI GCWGC 1 cut(s) 236
TspDTI ATGAA 4 cut(s) 195, 199, 274, 461
TspGWI ACGGA 2 cut(s) 280, 545
Van91I CCANNNNNTGG 1 cut(s) 579
XapI RAATTY 1 cut(s) 454
XcmI CCANNNNNNNNNTGG 1 cut(s) 309
XmnI GAANNNNTTC 1 cut(s) 434
XspI CTAG 2 cut(s) 111, 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.