Rorug07G0344600

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
38240002 .. 38241840
1839 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0344600.1

Sequence Viewer

Length: 372 bp
ATGGGGAATGGTAAAGGGAAGAGGAAAGAGTTGGATAATGAAAACAATGATGAGGAAGTAAGAACAGAACATGTTGATGATGTTGAAGAAACAGTTGAAGAAGAGGTTGCTGATAAGTTTATTGATAGTGATTATGAATTAAACCCTGAGGATGATGGTGAAGCAAATGATGTTGAGTTCAGTGCAAATGTTGATAATGTAATGAGTTTAAGGAATGAACCGATATGGGTTTTGCAGTCCTACAATGCTAGTATTATTGAAGCAAGAGATCAGCTGATTCTAAGTGTGATGGAGAAGATTAGGGTTACTATGATGAAAAGGTTGGCCAACAAAAGATGTGGTGGTCTTATGTGGAAGGATAAGTTGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

14.23

Weight (kDa)

4.41

Isoelectric Point (pI)

43.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 324
AfaI GTAC 1 cut(s) 368
AflIII ACRYGT 1 cut(s) 70
AgsI TTSAA 3 cut(s) 86, 98, 260
AluBI AGCT 1 cut(s) 274
AluI AGCT 1 cut(s) 274
AoxI GGCC 1 cut(s) 324
AsuHPI GGTGA 1 cut(s) 170
AxyI CCTNAGG 1 cut(s) 147
BalI TGGCCA 1 cut(s) 326
BccI CCATC 2 cut(s) 149, 283
BfaI CTAG 1 cut(s) 249
Bse21I CCTNAGG 1 cut(s) 147
BseGI GGATG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 138
BshFI GGCC 1 cut(s) 326
BsnI GGCC 1 cut(s) 326
Bsp143I GATC 1 cut(s) 268
BspANI GGCC 1 cut(s) 326
BspCNI CTCAG 1 cut(s) 139
BssMI GATC 1 cut(s) 268
Bst4CI ACNGT 1 cut(s) 94
Bst6I CTCTTC 2 cut(s) 14, 96
BstDEI CTNAG 2 cut(s) 147, 281
BstF5I GGATG 1 cut(s) 157
BstKTI GATC 1 cut(s) 271
BstMBI GATC 1 cut(s) 268
BstNSI RCATGY 1 cut(s) 74
Bsu36I CCTNAGG 1 cut(s) 147
BsuRI GGCC 1 cut(s) 326
BtsCI GGATG 1 cut(s) 157
BtsIMutI CAGTG 1 cut(s) 187
Csp6I GTAC 1 cut(s) 367
CspCI CAANNNNNGTGG 2 cut(s) 319, 354
CviAII CATG 1 cut(s) 71
CviJI RGCY 2 cut(s) 274, 326
CviKI_1 RGCY 2 cut(s) 274, 326
CviQI GTAC 1 cut(s) 367
DdeI CTNAG 2 cut(s) 147, 281
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
EaeI YGGCCR 1 cut(s) 324
Eam1104I CTCTTC 2 cut(s) 14, 96
EarI CTCTTC 2 cut(s) 14, 96
Eco81I CCTNAGG 1 cut(s) 147
FaeI CATG 1 cut(s) 74
FaiI YATR 5 cut(s) 72, 135, 226, 311, 350
FatI CATG 1 cut(s) 70
FokI GGATG 1 cut(s) 164
FspBI CTAG 1 cut(s) 249
HaeIII GGCC 1 cut(s) 326
Hin1II CATG 1 cut(s) 74
HinfI GANTC 1 cut(s) 277
HphI GGTGA 1 cut(s) 170
HpyAV CCTTC 1 cut(s) 349
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4V TGCA 2 cut(s) 185, 235
HpyF3I CTNAG 2 cut(s) 147, 281
Hsp92II CATG 1 cut(s) 74
Kzo9I GATC 1 cut(s) 268
LpnPI CCDG 1 cut(s) 159
MaeI CTAG 1 cut(s) 249
MaeIII GTNAC 1 cut(s) 304
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 5 cut(s) 31, 98, 110, 113, 307
MlsI TGGCCA 1 cut(s) 326
MluCI AATT 1 cut(s) 137
MluNI TGGCCA 1 cut(s) 326
MmeI TCCRAC 1 cut(s) 12
MnlI CCTC 4 cut(s) 15, 46, 97, 142
Mox20I TGGCCA 1 cut(s) 326
MscI TGGCCA 1 cut(s) 326
MseI TTAA 2 cut(s) 140, 209
MslI CAYNNNNRTG 1 cut(s) 75
Msp20I TGGCCA 1 cut(s) 326
MspA1I CMGCKG 1 cut(s) 274
NdeII GATC 1 cut(s) 268
NlaIII CATG 1 cut(s) 74
NspI RCATGY 1 cut(s) 74
PciI ACATGT 1 cut(s) 70
PfeI GAWTC 1 cut(s) 277
PscI ACATGT 1 cut(s) 70
PvuII CAGCTG 1 cut(s) 274
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
RseI CAYNNNNRTG 1 cut(s) 75
SaqAI TTAA 2 cut(s) 140, 209
Sau3AI GATC 1 cut(s) 268
SetI ASST 3 cut(s) 108, 276, 323
SgeI CNNG 4 cut(s) 83, 158, 261, 276
SmiMI CAYNNNNRTG 1 cut(s) 75
Sse9I AATT 1 cut(s) 137
SspMI CTAG 1 cut(s) 249
TaaI ACNGT 1 cut(s) 94
TasI AATT 1 cut(s) 137
TatI WGTACW 1 cut(s) 366
TfiI GAWTC 1 cut(s) 277
Tru1I TTAA 2 cut(s) 140, 209
Tru9I TTAA 2 cut(s) 140, 209
TscAI CASTG 1 cut(s) 187
TspDTI ATGAA 4 cut(s) 54, 150, 231, 329
TspRI CASTG 1 cut(s) 187
XceI RCATGY 1 cut(s) 74
XspI CTAG 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.