FvH4_5g13222

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000512
Physical Location & Seq
Reverse (-)
7470478 .. 7472172
1695 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g13222.t1

Sequence Viewer

Length: 411 bp
ATGGATTTGAAGGCATTTGCCCTCCAACTTCTTACAAAACTTGGCTGGATTCACCATCCAGCTGACGAAGAAGAAGTTGATCAACCACCGGTGGCCGGAAACCGCAACTTGGATTGGCCAAAAATGTTCATAGTATTTTGCTCGGCCTCCGCGGTCGAATTGGCTCTCCTATCCGCCCAAATCCACTCTAAGCTCCCGGCGATATATTGCTTCCTCGGTCTCACCATCCTGATGTGCTTTAGTTGCTTCTTTACGATGAAGAGATGGCTCAACCAGCAGCAGCTACATGCCTACATGCCACAGCCTAGACTGGCGCGCCCAAGTTACTTGTTGTGTTTTGCTCGGCTTCCGCGATCCAAATGGCTGTCCTATGACTCCTATCAGCACAAATCCACTATGAACTCTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.75

Weight (kDa)

8.88

Isoelectric Point (pI)

61.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 152, 316, 352
AciI CCGC 5 cut(s) 103, 150, 152, 174, 350
AclWI GGATC 1 cut(s) 348
AcoI YGGCCR 2 cut(s) 93, 116
AfiI CCNNNNNNNGG 2 cut(s) 95, 109
AgeI ACCGGT 1 cut(s) 88
AgsI TTSAA 1 cut(s) 10
AluBI AGCT 3 cut(s) 62, 193, 283
AluI AGCT 3 cut(s) 62, 193, 283
Alw26I GTCTC 1 cut(s) 224
AlwI GGATC 1 cut(s) 348
AoxI GGCC 3 cut(s) 93, 116, 144
ApeKI GCWGC 2 cut(s) 277, 280
AscI GGCGCGCC 1 cut(s) 314
AsiGI ACCGGT 1 cut(s) 88
AspLEI GCGC 2 cut(s) 316, 318
AsuC2I CCSGG 1 cut(s) 197
AsuHPI GGTGA 2 cut(s) 44, 214
BalI TGGCCA 1 cut(s) 118
BbvI GCAGC 2 cut(s) 289, 292
BccI CCATC 3 cut(s) 63, 233, 258
BclI TGATCA 1 cut(s) 79
BcnI CCSGG 1 cut(s) 197
BcoDI GTCTC 1 cut(s) 224
BfaI CTAG 1 cut(s) 306
BisI GCNGC 2 cut(s) 278, 281
BlsI GCNGC 2 cut(s) 279, 282
Bme1390I CCNGG 1 cut(s) 197
BmrFI CCNGG 1 cut(s) 197
BpuMI CCSGG 1 cut(s) 197
BsaI GGTCTC 1 cut(s) 224
BsaJI CCNNGG 2 cut(s) 150, 214
BsaWI WCCGGW 1 cut(s) 88
Bsc4I CCNNNNNNNGG 2 cut(s) 95, 109
Bse118I RCCGGY 1 cut(s) 88
Bse1I ACTGG 1 cut(s) 315
BseDI CCNNGG 2 cut(s) 150, 214
BseGI GGATG 2 cut(s) 55, 225
BseLI CCNNNNNNNGG 2 cut(s) 95, 109
BseNI ACTGG 1 cut(s) 315
BsePI GCGCGC 1 cut(s) 314
BseXI GCAGC 2 cut(s) 289, 292
Bsh1236I CGCG 3 cut(s) 152, 316, 352
Bsh1285I CGRYCG 1 cut(s) 156
BshFI GGCC 3 cut(s) 95, 118, 146
BshTI ACCGGT 1 cut(s) 88
BsiEI CGRYCG 1 cut(s) 156
BsiSI CCGG 3 cut(s) 89, 96, 197
BslI CCNNNNNNNGG 2 cut(s) 95, 109
BsmAI GTCTC 1 cut(s) 224
BsnI GGCC 3 cut(s) 95, 118, 146
Bso31I GGTCTC 1 cut(s) 224
Bsp143I GATC 2 cut(s) 79, 353
BspACI CCGC 5 cut(s) 103, 150, 152, 174, 350
BspANI GGCC 3 cut(s) 95, 118, 146
BspFNI CGCG 3 cut(s) 152, 316, 352
BspPI GGATC 1 cut(s) 348
BspTNI GGTCTC 1 cut(s) 224
BsrFI RCCGGY 1 cut(s) 88
BsrI ACTGG 1 cut(s) 315
BssAI RCCGGY 1 cut(s) 88
BssECI CCNNGG 2 cut(s) 150, 214
BssHII GCGCGC 1 cut(s) 314
BssMI GATC 2 cut(s) 79, 353
Bst6I CTCTTC 1 cut(s) 254
BstC8I GCNNGC 1 cut(s) 316
BstDEI CTNAG 1 cut(s) 189
BstDSI CCRYGG 1 cut(s) 150
BstF5I GGATG 2 cut(s) 55, 225
BstFNI CGCG 3 cut(s) 152, 316, 352
BstHHI GCGC 2 cut(s) 316, 318
BstKTI GATC 2 cut(s) 82, 356
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 2 cut(s) 79, 353
BstMCI CGRYCG 1 cut(s) 156
BstMWI GCNNNNNNNGC 2 cut(s) 243, 274
BstNSI RCATGY 2 cut(s) 290, 298
BstSCI CCNGG 1 cut(s) 195
BstUI CGCG 3 cut(s) 152, 316, 352
BstV1I GCAGC 2 cut(s) 289, 292
BsuRI GGCC 3 cut(s) 95, 118, 146
BtgI CCRYGG 1 cut(s) 150
BtsCI GGATG 2 cut(s) 55, 225
Cac8I GCNNGC 1 cut(s) 316
CfoI GCGC 2 cut(s) 316, 318
Cfr10I RCCGGY 1 cut(s) 88
Cfr42I CCGCGG 1 cut(s) 153
CspAI ACCGGT 1 cut(s) 88
CviAII CATG 2 cut(s) 287, 295
DdeI CTNAG 1 cut(s) 189
DpnI GATC 2 cut(s) 81, 355
DpnII GATC 2 cut(s) 79, 353
EaeI YGGCCR 2 cut(s) 93, 116
Eam1104I CTCTTC 1 cut(s) 254
EarI CTCTTC 1 cut(s) 254
EciI GGCGGA 1 cut(s) 163
Eco31I GGTCTC 1 cut(s) 224
FaeI CATG 2 cut(s) 290, 298
FaiI YATR 7 cut(s) 131, 205, 288, 296, 372, 398, 409
FatI CATG 2 cut(s) 286, 294
FbaI TGATCA 1 cut(s) 79
Fnu4HI GCNGC 2 cut(s) 278, 281
FokI GGATG 2 cut(s) 42, 212
Fsp4HI GCNGC 2 cut(s) 278, 281
FspBI CTAG 1 cut(s) 306
GlaI GCGC 2 cut(s) 315, 317
GluI GCNGC 2 cut(s) 278, 281
HaeIII GGCC 3 cut(s) 95, 118, 146
HapII CCGG 3 cut(s) 89, 96, 197
HhaI GCGC 2 cut(s) 316, 318
Hin1II CATG 2 cut(s) 290, 298
Hin6I GCGC 2 cut(s) 314, 316
HinP1I GCGC 2 cut(s) 314, 316
HinfI GANTC 2 cut(s) 49, 374
HpaII CCGG 3 cut(s) 89, 96, 197
HphI GGTGA 2 cut(s) 44, 214
Hpy188III TCNNGA 1 cut(s) 229
HpyAV CCTTC 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 243, 274
HpyF3I CTNAG 1 cut(s) 189
Hsp92II CATG 2 cut(s) 290, 298
HspAI GCGC 2 cut(s) 314, 316
Ksp22I TGATCA 1 cut(s) 79
KspI CCGCGG 1 cut(s) 153
Kzo9I GATC 2 cut(s) 79, 353
LmnI GCTCC 1 cut(s) 198
LpnPI CCDG 8 cut(s) 31, 72, 102, 109, 210, 242, 287, 296
Lsp1109I GCAGC 2 cut(s) 289, 292
MaeI CTAG 1 cut(s) 306
MaeIII GTNAC 1 cut(s) 323
MalI GATC 2 cut(s) 81, 355
MboI GATC 2 cut(s) 79, 353
MboII GAAGA 3 cut(s) 80, 83, 271
MlsI TGGCCA 1 cut(s) 118
MluCI AATT 1 cut(s) 158
MluNI TGGCCA 1 cut(s) 118
MlyI GAGTC 1 cut(s) 368
MmeI TCCRAC 1 cut(s) 49
MnlI CCTC 3 cut(s) 32, 157, 224
Mox20I TGGCCA 1 cut(s) 118
MscI TGGCCA 1 cut(s) 118
MslI CAYNNNNRTG 1 cut(s) 230
Msp20I TGGCCA 1 cut(s) 118
MspA1I CMGCKG 2 cut(s) 62, 152
MspI CCGG 3 cut(s) 89, 96, 197
MspR9I CCNGG 1 cut(s) 197
MvnI CGCG 3 cut(s) 152, 316, 352
MwoI GCNNNNNNNGC 2 cut(s) 243, 274
NciI CCSGG 1 cut(s) 197
NdeII GATC 2 cut(s) 79, 353
NlaIII CATG 2 cut(s) 290, 298
NmeAIII GCCGAG 2 cut(s) 122, 322
NspI RCATGY 2 cut(s) 290, 298
PalAI GGCGCGCC 1 cut(s) 314
PauI GCGCGC 1 cut(s) 314
PcsI WCGNNNNNNNCGW 1 cut(s) 349
PfeI GAWTC 1 cut(s) 49
PinAI ACCGGT 1 cut(s) 88
PkrI GCNGC 2 cut(s) 279, 282
PleI GAGTC 1 cut(s) 368
PpsI GAGTC 1 cut(s) 368
PteI GCGCGC 1 cut(s) 314
PvuII CAGCTG 1 cut(s) 62
RseI CAYNNNNRTG 1 cut(s) 230
SacII CCGCGG 1 cut(s) 153
SatI GCNGC 2 cut(s) 278, 281
Sau3AI GATC 2 cut(s) 79, 353
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 1 cut(s) 197
SetI ASST 3 cut(s) 64, 195, 285
Sfr303I CCGCGG 1 cut(s) 153
SgrAI CRCCGGYG 1 cut(s) 88
SgrBI CCGCGG 1 cut(s) 153
SgsI GGCGCGCC 1 cut(s) 314
SmiMI CAYNNNNRTG 1 cut(s) 230
Sse9I AATT 1 cut(s) 158
SsiI CCGC 5 cut(s) 103, 150, 152, 174, 350
SspMI CTAG 1 cut(s) 306
StyD4I CCNGG 1 cut(s) 195
TaqI TCGA 1 cut(s) 156
TaqII GACCGA 1 cut(s) 206
TasI AATT 1 cut(s) 158
TfiI GAWTC 1 cut(s) 49
TseI GCWGC 2 cut(s) 277, 280
TspDTI ATGAA 2 cut(s) 118, 272
XceI RCATGY 2 cut(s) 290, 298
XspI CTAG 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.