Rh3CG048300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000512
Physical Location & Seq
Reverse (-)
3305517 .. 3305975
459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG048300.1

Sequence Viewer

Length: 459 bp
ATGAATGTTGCTGCGGCTATTACAAAACTGATCCAGCTAGTTCAGAAACTTAGCCCAATATTTCATCGTCTTCCAACTCCTGCTGACCCAGAAGCAGTGGTGCCCGATCATCAAGTACCACGGCGCCAAAACTTAGACTGGGCTAAGATAATTATGGTGTTTAGCTTGGCATCAGCAATCGACATAGCTCTCCTATCAGTCCAAGTTCACTCCCAACTTCCTATAATCTTCTACTTTCTCGAGCTTTCTATCTTGCTTGCCTTTACTTGTTTCTTCACAAGCAAGTTGGTTCATTCAAACTGTCCACCAGTCGCTCAGGTGCTCGAGCGATTTGGCATCTTCTTTGGCGTCAGTGCCTTCTTCATATCCATCACAGTTCCGTTTCCGGCTGTCTGGTTCAAATGCATAGTATGCTTCATCTACGCAGTCTCATGGCTTGTGATATTCTTTTGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

17.15

Weight (kDa)

8.35

Isoelectric Point (pI)

32.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 100, 123
AciI CCGC 1 cut(s) 14
AclWI GGATC 1 cut(s) 25
AcyI GRCGYC 2 cut(s) 124, 348
AfaI GTAC 1 cut(s) 117
AgsI TTSAA 2 cut(s) 297, 400
AluBI AGCT 4 cut(s) 37, 165, 188, 244
AluI AGCT 4 cut(s) 37, 165, 188, 244
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 1 cut(s) 433
AlwI GGATC 1 cut(s) 25
Ama87I CYCGRG 2 cut(s) 239, 323
ApeKI GCWGC 1 cut(s) 11
AspLEI GCGC 1 cut(s) 126
AvaI CYCGRG 2 cut(s) 239, 323
BaeGI GKGCMC 1 cut(s) 105
BanI GGYRCC 2 cut(s) 100, 123
BbsI GAAGAC 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 324
BccI CCATC 1 cut(s) 377
BceAI ACGGC 1 cut(s) 137
BcoDI GTCTC 1 cut(s) 433
BfaI CTAG 1 cut(s) 38
BfoI RGCGCY 1 cut(s) 127
BisI GCNGC 2 cut(s) 12, 15
BlsI GCNGC 2 cut(s) 13, 16
BmeT110I CYCGRG 2 cut(s) 239, 323
BmiI GGNNCC 2 cut(s) 102, 125
BmrI ACTGGG 1 cut(s) 148
BmsI GCATC 2 cut(s) 179, 345
BmuI ACTGGG 1 cut(s) 148
BpiI GAAGAC 1 cut(s) 62
Bpu10I CCTNAGC 1 cut(s) 315
BsaHI GRCGYC 2 cut(s) 124, 348
BsaJI CCNNGG 1 cut(s) 119
Bse1I ACTGG 2 cut(s) 143, 308
BseDI CCNNGG 1 cut(s) 119
BseMII CTCAG 1 cut(s) 329
BseNI ACTGG 2 cut(s) 143, 308
BseSI GKGCMC 1 cut(s) 105
BshNI GGYRCC 2 cut(s) 100, 123
BsiHKAI GWGCWC 1 cut(s) 324
BsiHKCI CYCGRG 2 cut(s) 239, 323
BsiSI CCGG 1 cut(s) 386
BsmAI GTCTC 1 cut(s) 433
BsoBI CYCGRG 2 cut(s) 239, 323
Bsp1286I GDGCHC 2 cut(s) 105, 324
Bsp143I GATC 2 cut(s) 30, 106
BspACI CCGC 1 cut(s) 14
BspCNI CTCAG 1 cut(s) 328
BspLI GGNNCC 2 cut(s) 102, 125
BspPI GGATC 1 cut(s) 25
BspT107I GGYRCC 2 cut(s) 100, 123
BsrI ACTGG 2 cut(s) 143, 308
BssECI CCNNGG 1 cut(s) 119
BssMI GATC 2 cut(s) 30, 106
BssNI GRCGYC 2 cut(s) 124, 348
Bst4CI ACNGT 2 cut(s) 302, 376
BstACI GRCGYC 2 cut(s) 124, 348
BstAPI GCANNNNNTGC 1 cut(s) 411
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 4 cut(s) 50, 133, 144, 315
BstDSI CCRYGG 1 cut(s) 119
BstH2I RGCGCY 1 cut(s) 127
BstHHI GCGC 1 cut(s) 126
BstKTI GATC 2 cut(s) 33, 109
BstMAI GTCTC 1 cut(s) 433
BstMBI GATC 2 cut(s) 30, 106
BstMWI GCNNNNNNNGC 1 cut(s) 411
BstSLI GKGCMC 1 cut(s) 105
BstV2I GAAGAC 1 cut(s) 62
BtgI CCRYGG 1 cut(s) 119
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 2 cut(s) 102, 358
Cac8I GCNNGC 1 cut(s) 258
CfoI GCGC 1 cut(s) 126
CseI GACGC 1 cut(s) 337
Csp6I GTAC 1 cut(s) 116
CviAII CATG 1 cut(s) 432
CviJI RGCY 9 cut(s) 17, 37, 54, 143, 165, 188, 244, 389, 436
CviKI_1 RGCY 9 cut(s) 17, 37, 54, 143, 165, 188, 244, 389, 436
CviQI GTAC 1 cut(s) 116
DdeI CTNAG 4 cut(s) 50, 133, 144, 315
DinI GGCGCC 1 cut(s) 125
DpnI GATC 2 cut(s) 32, 108
DpnII GATC 2 cut(s) 30, 106
Eco88I CYCGRG 2 cut(s) 239, 323
EcoT22I ATGCAT 1 cut(s) 407
EgeI GGCGCC 1 cut(s) 125
EheI GGCGCC 1 cut(s) 125
FaeI CATG 1 cut(s) 435
FaiI YATR 7 cut(s) 155, 185, 224, 365, 407, 412, 433
FatI CATG 1 cut(s) 431
Fnu4HI GCNGC 2 cut(s) 12, 15
Fsp4HI GCNGC 2 cut(s) 12, 15
FspBI CTAG 1 cut(s) 38
GlaI GCGC 1 cut(s) 125
GluI GCNGC 2 cut(s) 12, 15
HaeII RGCGCY 1 cut(s) 127
HapII CCGG 1 cut(s) 386
HgaI GACGC 1 cut(s) 337
HhaI GCGC 1 cut(s) 126
Hin1I GRCGYC 2 cut(s) 124, 348
Hin1II CATG 1 cut(s) 435
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HpaII CCGG 1 cut(s) 386
Hpy166II GTNNAC 2 cut(s) 208, 305
Hpy188I TCNGA 1 cut(s) 45
Hpy188III TCNNGA 1 cut(s) 239
Hpy8I GTNNAC 2 cut(s) 208, 305
HpyAV CCTTC 1 cut(s) 367
HpyCH4III ACNGT 2 cut(s) 302, 376
HpyCH4V TGCA 1 cut(s) 405
HpyF10VI GCNNNNNNNGC 1 cut(s) 411
HpyF3I CTNAG 4 cut(s) 50, 133, 144, 315
Hsp92I GRCGYC 2 cut(s) 124, 348
Hsp92II CATG 1 cut(s) 435
HspAI GCGC 1 cut(s) 124
KasI GGCGCC 1 cut(s) 123
Kzo9I GATC 2 cut(s) 30, 106
LpnPI CCDG 8 cut(s) 47, 93, 102, 124, 302, 321, 379, 399
LweI GCATC 2 cut(s) 179, 345
MaeI CTAG 1 cut(s) 38
MalI GATC 2 cut(s) 32, 108
MboI GATC 2 cut(s) 30, 106
MboII GAAGA 5 cut(s) 62, 220, 265, 331, 352
MhlI GDGCHC 2 cut(s) 105, 324
MluCI AATT 2 cut(s) 150, 454
Mly113I GGCGCC 1 cut(s) 124
MmeI TCCRAC 1 cut(s) 98
Mph1103I ATGCAT 1 cut(s) 407
MseI TTAA 1 cut(s) 457
MspI CCGG 1 cut(s) 386
MwoI GCNNNNNNNGC 1 cut(s) 411
NarI GGCGCC 1 cut(s) 124
NdeII GATC 2 cut(s) 30, 106
NlaIII CATG 1 cut(s) 435
NlaIV GGNNCC 2 cut(s) 102, 125
NsiI ATGCAT 1 cut(s) 407
PaeR7I CTCGAG 2 cut(s) 239, 323
PkrI GCNGC 2 cut(s) 13, 16
PluTI GGCGCC 1 cut(s) 127
PspN4I GGNNCC 2 cut(s) 102, 125
PspXI VCTCGAGB 1 cut(s) 323
RsaI GTAC 1 cut(s) 117
RsaNI GTAC 1 cut(s) 116
SaqAI TTAA 1 cut(s) 457
SatI GCNGC 2 cut(s) 12, 15
Sau3AI GATC 2 cut(s) 30, 106
SduI GDGCHC 2 cut(s) 105, 324
SetI ASST 5 cut(s) 39, 167, 190, 246, 321
SfaNI GCATC 2 cut(s) 179, 345
SfoI GGCGCC 1 cut(s) 125
Sfr274I CTCGAG 2 cut(s) 239, 323
SlaI CTCGAG 2 cut(s) 239, 323
SmlI CTYRAG 2 cut(s) 239, 323
SmoI CTYRAG 2 cut(s) 239, 323
Sse9I AATT 2 cut(s) 150, 454
SsiI CCGC 1 cut(s) 14
SspDI GGCGCC 1 cut(s) 123
SspI AATATT 1 cut(s) 60
SspMI CTAG 1 cut(s) 38
TaaI ACNGT 2 cut(s) 302, 376
TaqI TCGA 3 cut(s) 180, 240, 324
TasI AATT 2 cut(s) 150, 454
TauI GCSGC 1 cut(s) 17
Tru1I TTAA 1 cut(s) 457
Tru9I TTAA 1 cut(s) 457
TscAI CASTG 2 cut(s) 102, 358
TseI GCWGC 1 cut(s) 11
TspDTI ATGAA 5 cut(s) 17, 53, 281, 352, 406
TspGWI ACGGA 1 cut(s) 369
TspRI CASTG 2 cut(s) 102, 358
XhoI CTCGAG 2 cut(s) 239, 323
XspI CTAG 1 cut(s) 38
Zsp2I ATGCAT 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.