Prupe.3G028900_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
2163524 .. 2164320
797 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G028900.1

Sequence Viewer

Length: 327 bp
ATGAATACAGAGAGTCTAGTTGGAAATCTGGTGAGAAAATCTTATGAAATGGAAGGTAGCCTTACTTTCAAACTTGGAGAAGAGGAGTTGGAGCCTGGGATGAGATCTCCCATAATTCTTCGTCCAAAACAAAATCGAGGAACTAACGAGCCCCAAAAAAAAAGGAAACAGAGTGCAAAAAATTGGAAAAATAGAAGAAAAGATCTGCAAAAATGGGGAAACAAAATCAGCAGAGATCCTAAGAAAAAGAGATCCATAGTTTTCTGGCTGAAAAATGTATTCTTTTTCTCAGAAGTATTTTATGAATGTTGGTGCAGACTCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

13.0

Weight (kDa)

10.15

Isoelectric Point (pI)

70.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 230, 246
AgsI TTSAA 1 cut(s) 70
AjnI CCWGG 1 cut(s) 94
AlwI GGATC 2 cut(s) 230, 246
AsuHPI GGTGA 1 cut(s) 43
BanII GRGCYC 1 cut(s) 153
BciT130I CCWGG 1 cut(s) 96
BfaI CTAG 1 cut(s) 17
BglII AGATCT 2 cut(s) 104, 202
Bme1390I CCNGG 1 cut(s) 96
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 95
BseBI CCWGG 1 cut(s) 96
BseDI CCNNGG 1 cut(s) 95
BseGI GGATG 1 cut(s) 105
BseMII CTCAG 1 cut(s) 303
BseRI GAGGAG 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 153
Bsp143I GATC 4 cut(s) 104, 202, 235, 251
BspCNI CTCAG 1 cut(s) 302
BspLI GGNNCC 1 cut(s) 93
BspPI GGATC 2 cut(s) 230, 246
BssECI CCNNGG 1 cut(s) 95
BssMI GATC 4 cut(s) 104, 202, 235, 251
Bst2UI CCWGG 1 cut(s) 96
Bst6I CTCTTC 1 cut(s) 75
BstDEI CTNAG 2 cut(s) 240, 289
BstF5I GGATG 1 cut(s) 105
BstKTI GATC 4 cut(s) 107, 205, 238, 254
BstMBI GATC 4 cut(s) 104, 202, 235, 251
BstNI CCWGG 1 cut(s) 96
BstSCI CCNGG 1 cut(s) 94
BstX2I RGATCY 4 cut(s) 104, 202, 235, 251
BstYI RGATCY 4 cut(s) 104, 202, 235, 251
BtsCI GGATG 1 cut(s) 105
CviJI RGCY 4 cut(s) 60, 94, 151, 268
CviKI_1 RGCY 4 cut(s) 60, 94, 151, 268
DdeI CTNAG 2 cut(s) 240, 289
DpnI GATC 4 cut(s) 106, 204, 237, 253
DpnII GATC 4 cut(s) 104, 202, 235, 251
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
Eco24I GRGCYC 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 94
EcoT38I GRGCYC 1 cut(s) 153
FaiI YATR 4 cut(s) 45, 113, 257, 303
FalI AAGNNNNNCTT 2 cut(s) 45, 77
FokI GGATG 1 cut(s) 112
FriOI GRGCYC 1 cut(s) 153
FspBI CTAG 1 cut(s) 17
HinfI GANTC 2 cut(s) 13, 318
HphI GGTGA 1 cut(s) 43
Hpy188I TCNGA 1 cut(s) 292
HpyAV CCTTC 1 cut(s) 47
HpyCH4V TGCA 3 cut(s) 176, 208, 315
HpyF3I CTNAG 2 cut(s) 240, 289
Kzo9I GATC 4 cut(s) 104, 202, 235, 251
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 4 cut(s) 14, 81, 108, 250
MaeI CTAG 1 cut(s) 17
MalI GATC 4 cut(s) 106, 204, 237, 253
MboI GATC 4 cut(s) 104, 202, 235, 251
MboII GAAGA 3 cut(s) 92, 110, 207
MflI RGATCY 4 cut(s) 104, 202, 235, 251
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 2 cut(s) 114, 181
MlyI GAGTC 2 cut(s) 22, 312
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 2 cut(s) 76, 131
MspR9I CCNGG 1 cut(s) 96
MvaI CCWGG 1 cut(s) 96
NdeII GATC 4 cut(s) 104, 202, 235, 251
NlaIV GGNNCC 1 cut(s) 93
PleI GAGTC 2 cut(s) 21, 312
PpsI GAGTC 2 cut(s) 21, 312
Psp6I CCWGG 1 cut(s) 94
PspGI CCWGG 1 cut(s) 94
PspN4I GGNNCC 1 cut(s) 93
PsuI RGATCY 4 cut(s) 104, 202, 235, 251
Sau3AI GATC 4 cut(s) 104, 202, 235, 251
SchI GAGTC 2 cut(s) 22, 312
ScrFI CCNGG 1 cut(s) 96
SduI GDGCHC 1 cut(s) 153
SetI ASST 1 cut(s) 58
SgeI CNNG 8 cut(s) 29, 41, 86, 107, 108, 149, 160, 277
Sse9I AATT 2 cut(s) 114, 181
SspMI CTAG 1 cut(s) 17
StyD4I CCNGG 1 cut(s) 94
TaqI TCGA 1 cut(s) 136
TasI AATT 2 cut(s) 114, 181
TspDTI ATGAA 3 cut(s) 17, 60, 318
XspI CTAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.