Rmu_sc0007533.1_g000010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007533.1
OG0000512
Physical Location & Seq
Forward (+)
23852 .. 24325
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007533.1_g000010.1.cds

Sequence Viewer

Length: 474 bp
atgagtttttctgcggctattacaaaactgctgcagctagttcagaaacttagcccatttcacggtctgccaactcctcctgacccagaagcagtggtgcccgatcatcaagtaccacggcgccaaaacttagactgggctaagataattctcgtgtttagcttggcatcagcaatcgacatagctctcctatcagtccaagttcactcccaacttcctataatcttctacgttctcgagcttgctatcttgcttgcctttacttgtttcttcacaagcaattgcaagttgattcattcaaactgtccactagtcgctcaggtgctcgagcgatttcgcatcttctttggcgtcagtgccttcttcgtatgcatcacagttccgtttccggctgtctggttcaaatgcatagcatgcttcatctacgcagtctcatggcttgtgatattcttttgtaattacttctgtgcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.72

Weight (kDa)

8.15

Isoelectric Point (pI)

40.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 97, 120
AciI CCGC 1 cut(s) 14
AcyI GRCGYC 2 cut(s) 121, 351
AfaI GTAC 1 cut(s) 114
AfiI CCNNNNNNNGG 1 cut(s) 62
AgsI TTSAA 2 cut(s) 300, 403
AhlI ACTAGT 1 cut(s) 310
AluBI AGCT 4 cut(s) 37, 162, 185, 241
AluI AGCT 4 cut(s) 37, 162, 185, 241
Alw21I GWGCWC 1 cut(s) 327
Alw26I GTCTC 1 cut(s) 436
Ama87I CYCGRG 2 cut(s) 236, 326
ApeKI GCWGC 2 cut(s) 31, 34
AspLEI GCGC 1 cut(s) 123
AvaI CYCGRG 2 cut(s) 236, 326
BaeGI GKGCMC 1 cut(s) 102
BanI GGYRCC 2 cut(s) 97, 120
BauI CACGAG 1 cut(s) 152
Bbv12I GWGCWC 1 cut(s) 327
BbvI GCAGC 2 cut(s) 18, 46
BceAI ACGGC 1 cut(s) 134
BcoDI GTCTC 1 cut(s) 436
BcuI ACTAGT 1 cut(s) 310
BfaI CTAG 2 cut(s) 38, 311
BfmI CTRYAG 1 cut(s) 32
BfoI RGCGCY 1 cut(s) 124
BisI GCNGC 3 cut(s) 15, 32, 35
BlsI GCNGC 3 cut(s) 16, 33, 36
BmeT110I CYCGRG 2 cut(s) 236, 326
BmiI GGNNCC 2 cut(s) 99, 122
BmrI ACTGGG 1 cut(s) 145
BmsI GCATC 3 cut(s) 176, 348, 381
BmuI ACTGGG 1 cut(s) 145
Bpu10I CCTNAGC 1 cut(s) 318
BsaHI GRCGYC 2 cut(s) 121, 351
BsaJI CCNNGG 1 cut(s) 116
Bsc4I CCNNNNNNNGG 1 cut(s) 62
Bse1I ACTGG 1 cut(s) 140
BseDI CCNNGG 1 cut(s) 116
BseLI CCNNNNNNNGG 1 cut(s) 62
BseMII CTCAG 1 cut(s) 332
BseNI ACTGG 1 cut(s) 140
BseRI GAGGAG 1 cut(s) 66
BseSI GKGCMC 1 cut(s) 102
BseXI GCAGC 2 cut(s) 18, 46
BshNI GGYRCC 2 cut(s) 97, 120
BsiHKAI GWGCWC 1 cut(s) 327
BsiHKCI CYCGRG 2 cut(s) 236, 326
BsiSI CCGG 1 cut(s) 389
BslI CCNNNNNNNGG 1 cut(s) 62
BsmAI GTCTC 1 cut(s) 436
BsoBI CYCGRG 2 cut(s) 236, 326
Bsp1286I GDGCHC 2 cut(s) 102, 327
Bsp143I GATC 1 cut(s) 103
BspACI CCGC 1 cut(s) 14
BspCNI CTCAG 1 cut(s) 331
BspLI GGNNCC 2 cut(s) 99, 122
BspMAI CTGCAG 1 cut(s) 36
BspT107I GGYRCC 2 cut(s) 97, 120
BsrI ACTGG 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 116
BssMI GATC 1 cut(s) 103
BssNI GRCGYC 2 cut(s) 121, 351
BssSI CACGAG 1 cut(s) 152
Bst2BI CACGAG 1 cut(s) 152
Bst4CI ACNGT 3 cut(s) 65, 305, 379
BstACI GRCGYC 2 cut(s) 121, 351
BstAPI GCANNNNNTGC 1 cut(s) 414
BstC8I GCNNGC 3 cut(s) 243, 255, 415
BstDEI CTNAG 4 cut(s) 50, 130, 141, 318
BstDSI CCRYGG 1 cut(s) 116
BstH2I RGCGCY 1 cut(s) 124
BstHHI GCGC 1 cut(s) 123
BstKTI GATC 1 cut(s) 106
BstMAI GTCTC 1 cut(s) 436
BstMBI GATC 1 cut(s) 103
BstMWI GCNNNNNNNGC 1 cut(s) 414
BstNSI RCATGY 1 cut(s) 417
BstSFI CTRYAG 1 cut(s) 32
BstSLI GKGCMC 1 cut(s) 102
BstV1I GCAGC 2 cut(s) 18, 46
BtgI CCRYGG 1 cut(s) 116
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 2 cut(s) 99, 361
Cac8I GCNNGC 3 cut(s) 243, 255, 415
CfoI GCGC 1 cut(s) 123
CseI GACGC 1 cut(s) 340
Csp6I GTAC 1 cut(s) 113
CviAII CATG 2 cut(s) 414, 435
CviJI RGCY 9 cut(s) 17, 37, 54, 140, 162, 185, 241, 392, 439
CviKI_1 RGCY 9 cut(s) 17, 37, 54, 140, 162, 185, 241, 392, 439
CviQI GTAC 1 cut(s) 113
DdeI CTNAG 4 cut(s) 50, 130, 141, 318
DinI GGCGCC 1 cut(s) 122
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
Eco88I CYCGRG 2 cut(s) 236, 326
EcoT22I ATGCAT 2 cut(s) 374, 410
EgeI GGCGCC 1 cut(s) 122
EheI GGCGCC 1 cut(s) 122
FaeI CATG 2 cut(s) 417, 438
FaiI YATR 6 cut(s) 182, 221, 370, 410, 415, 436
FatI CATG 2 cut(s) 413, 434
Fnu4HI GCNGC 3 cut(s) 15, 32, 35
Fsp4HI GCNGC 3 cut(s) 15, 32, 35
FspBI CTAG 2 cut(s) 38, 311
GlaI GCGC 1 cut(s) 122
GluI GCNGC 3 cut(s) 15, 32, 35
HaeII RGCGCY 1 cut(s) 124
HapII CCGG 1 cut(s) 389
HgaI GACGC 1 cut(s) 340
HhaI GCGC 1 cut(s) 123
Hin1I GRCGYC 2 cut(s) 121, 351
Hin1II CATG 2 cut(s) 417, 438
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
HinfI GANTC 1 cut(s) 292
HpaII CCGG 1 cut(s) 389
Hpy166II GTNNAC 2 cut(s) 205, 308
Hpy188I TCNGA 1 cut(s) 45
Hpy188III TCNNGA 2 cut(s) 80, 236
Hpy8I GTNNAC 2 cut(s) 205, 308
HpyAV CCTTC 1 cut(s) 370
HpyCH4III ACNGT 3 cut(s) 65, 305, 379
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 4 cut(s) 34, 285, 372, 408
HpyF10VI GCNNNNNNNGC 1 cut(s) 414
HpyF3I CTNAG 4 cut(s) 50, 130, 141, 318
HpySE526I ACGT 1 cut(s) 231
Hsp92I GRCGYC 2 cut(s) 121, 351
Hsp92II CATG 2 cut(s) 417, 438
HspAI GCGC 1 cut(s) 121
KasI GGCGCC 1 cut(s) 120
Kzo9I GATC 1 cut(s) 103
LpnPI CCDG 6 cut(s) 93, 99, 121, 305, 382, 402
Lsp1109I GCAGC 2 cut(s) 18, 46
LweI GCATC 3 cut(s) 176, 348, 381
MaeI CTAG 2 cut(s) 38, 311
MaeII ACGT 1 cut(s) 231
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MboII GAAGA 4 cut(s) 217, 262, 334, 355
MfeI CAATTG 1 cut(s) 280
MhlI GDGCHC 2 cut(s) 102, 327
MluCI AATT 3 cut(s) 147, 280, 457
Mly113I GGCGCC 1 cut(s) 121
MnlI CCTC 1 cut(s) 87
Mph1103I ATGCAT 2 cut(s) 374, 410
MseI TTAA 1 cut(s) 472
MspI CCGG 1 cut(s) 389
MunI CAATTG 1 cut(s) 280
MwoI GCNNNNNNNGC 1 cut(s) 414
NarI GGCGCC 1 cut(s) 121
NdeII GATC 1 cut(s) 103
NlaIII CATG 2 cut(s) 417, 438
NlaIV GGNNCC 2 cut(s) 99, 122
NsiI ATGCAT 2 cut(s) 374, 410
NspI RCATGY 1 cut(s) 417
PaeI GCATGC 1 cut(s) 417
PaeR7I CTCGAG 2 cut(s) 236, 326
PfeI GAWTC 1 cut(s) 292
PkrI GCNGC 3 cut(s) 16, 33, 36
PluTI GGCGCC 1 cut(s) 124
PspN4I GGNNCC 2 cut(s) 99, 122
PspXI VCTCGAGB 1 cut(s) 326
PstI CTGCAG 1 cut(s) 36
RsaI GTAC 1 cut(s) 114
RsaNI GTAC 1 cut(s) 113
SaqAI TTAA 1 cut(s) 472
SatI GCNGC 3 cut(s) 15, 32, 35
Sau3AI GATC 1 cut(s) 103
SduI GDGCHC 2 cut(s) 102, 327
SetI ASST 6 cut(s) 39, 164, 187, 234, 243, 324
SfaNI GCATC 3 cut(s) 176, 348, 381
SfcI CTRYAG 1 cut(s) 32
SfoI GGCGCC 1 cut(s) 122
Sfr274I CTCGAG 2 cut(s) 236, 326
SlaI CTCGAG 2 cut(s) 236, 326
SmlI CTYRAG 2 cut(s) 236, 326
SmoI CTYRAG 2 cut(s) 236, 326
SpeI ACTAGT 1 cut(s) 310
SphI GCATGC 1 cut(s) 417
Sse9I AATT 3 cut(s) 147, 280, 457
SsiI CCGC 1 cut(s) 14
SspDI GGCGCC 1 cut(s) 120
SspMI CTAG 2 cut(s) 38, 311
TaaI ACNGT 3 cut(s) 65, 305, 379
TaiI ACGT 1 cut(s) 234
TaqI TCGA 3 cut(s) 177, 237, 327
TasI AATT 3 cut(s) 147, 280, 457
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 1 cut(s) 292
Tru1I TTAA 1 cut(s) 472
Tru9I TTAA 1 cut(s) 472
TscAI CASTG 2 cut(s) 99, 361
TseI GCWGC 2 cut(s) 31, 34
TspDTI ATGAA 2 cut(s) 284, 409
TspGWI ACGGA 1 cut(s) 372
TspRI CASTG 2 cut(s) 99, 361
XceI RCATGY 1 cut(s) 417
XhoI CTCGAG 2 cut(s) 236, 326
XspI CTAG 2 cut(s) 38, 311
Zsp2I ATGCAT 2 cut(s) 374, 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.