MD11G1013900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000512
Physical Location & Seq
Reverse (-)
1093516 .. 1094211
696 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1013900.v1.1.491

Sequence Viewer

Length: 696 bp
ATGAGTTCTGTTGTTAATACCGCCTTTGATCACTACATAAAGCCTTTTCTCCTTGCACTTATTGCAAAGACAATCCAACTCCTCAAACTTCTCATAATTAGTCATGTTGGTTGCGATTGCGATTCCGATCCTGACCTAGAAGCCGCAGTGCAACAACTTCCAGATGGGAGGACTAACTATAAGTACCTCACAAACAACAACTTAGAGTGGGCAAATATAATTGCCGTGTTTTGCTTGACAGCGGCCATTGGACTAGCGCTTCTCCCCTTCCAAATTCCCTCCCGCCATGTCCCTCACACTGCAATTTTTTACTTTCTTGGACTATCAGTCTTACTTGCCTTCACTTGTATTTTGGTAAGTAAATCTATTCACTTCAACTACTGTCCCGCCGGAATATCAATTGCCCATATTTTCCATCATGTTGGCCTCTTCTTTGGAGTTACAGCCTTCTTCATATCTATCTCCATACCATTTCCCTTGTGGTTCAAATGCATTGCCTATTCTATCTACGCTGCCGCCTTCCTCCTTGTACTTCTCTGCAATCTTCACTTCAATAAATATTACAAACCTCATGGTTTTAAGTACCCTACCCCAAACAATTCAATTTCTAAAACCGCCGTTGACCCCGCGGAAGAATCATGCCAAGGCGGTACTAGTAACCTTGATGATCAAGGATGCACTAATAGTATTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

25.52

Weight (kDa)

6.77

Isoelectric Point (pI)

33.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 629
AclWI GGATC 1 cut(s) 122
AcoI YGGCCR 1 cut(s) 243
AcsI RAATTY 1 cut(s) 273
AfaI GTAC 4 cut(s) 185, 531, 584, 652
AfeI AGCGCT 1 cut(s) 258
AgsI TTSAA 4 cut(s) 376, 487, 553, 603
AhdI GACNNNNNGTC 1 cut(s) 326
AhlI ACTAGT 1 cut(s) 653
AlwI GGATC 1 cut(s) 122
Aor51HI AGCGCT 1 cut(s) 258
AoxI GGCC 2 cut(s) 243, 424
ApeKI GCWGC 1 cut(s) 512
ApoI RAATTY 1 cut(s) 273
AspLEI GCGC 1 cut(s) 259
BbvI GCAGC 1 cut(s) 499
BccI CCATC 2 cut(s) 158, 423
BceAI ACGGC 2 cut(s) 209, 602
BclI TGATCA 2 cut(s) 28, 667
BcuI ACTAGT 1 cut(s) 653
BfaI CTAG 3 cut(s) 137, 254, 654
BfoI RGCGCY 1 cut(s) 260
BisI GCNGC 4 cut(s) 144, 243, 513, 516
BlsI GCNGC 4 cut(s) 145, 244, 514, 517
BmeRI GACNNNNNGTC 1 cut(s) 326
BmsI GCATC 1 cut(s) 665
BsaBI GATNNNNATC 1 cut(s) 126
BsaJI CCNNGG 2 cut(s) 627, 643
Bse3DI GCAATG 1 cut(s) 492
Bse8I GATNNNNATC 1 cut(s) 126
BseDI CCNNGG 2 cut(s) 627, 643
BseGI GGATG 1 cut(s) 680
BseJI GATNNNNATC 1 cut(s) 126
BseMI GCAATG 1 cut(s) 492
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 1 cut(s) 499
Bsh1236I CGCG 1 cut(s) 629
BshFI GGCC 2 cut(s) 245, 426
BsiSI CCGG 1 cut(s) 390
BslFI GGGAC 2 cut(s) 275, 369
BsmFI GGGAC 2 cut(s) 275, 369
BsnI GGCC 2 cut(s) 245, 426
Bsp143I GATC 3 cut(s) 28, 127, 667
BspANI GGCC 2 cut(s) 245, 426
BspFNI CGCG 1 cut(s) 629
BspPI GGATC 1 cut(s) 122
BsrDI GCAATG 1 cut(s) 492
BssECI CCNNGG 2 cut(s) 627, 643
BssMI GATC 3 cut(s) 28, 127, 667
BssT1I CCWWGG 1 cut(s) 643
Bst4CI ACNGT 1 cut(s) 383
Bst6I CTCTTC 1 cut(s) 434
BstAPI GCANNNNNTGC 1 cut(s) 62
BstDEI CTNAG 1 cut(s) 202
BstDSI CCRYGG 1 cut(s) 627
BstF5I GGATG 1 cut(s) 680
BstFNI CGCG 1 cut(s) 629
BstH2I RGCGCY 1 cut(s) 260
BstHHI GCGC 1 cut(s) 259
BstKTI GATC 3 cut(s) 31, 130, 670
BstMBI GATC 3 cut(s) 28, 127, 667
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstUI CGCG 1 cut(s) 629
BstV1I GCAGC 1 cut(s) 499
BstXI CCANNNNNNTGG 1 cut(s) 422
BsuRI GGCC 2 cut(s) 245, 426
BtgI CCRYGG 1 cut(s) 627
BtsCI GGATG 1 cut(s) 680
BtsI GCAGTG 2 cut(s) 153, 297
BtsIMutI CAGTG 2 cut(s) 153, 297
CfoI GCGC 1 cut(s) 259
Cfr42I CCGCGG 1 cut(s) 630
Csp6I GTAC 4 cut(s) 184, 530, 583, 651
CviAII CATG 5 cut(s) 104, 287, 419, 572, 639
CviJI RGCY 5 cut(s) 43, 143, 245, 426, 446
CviKI_1 RGCY 5 cut(s) 43, 143, 245, 426, 446
CviQI GTAC 4 cut(s) 184, 530, 583, 651
DdeI CTNAG 1 cut(s) 202
DpnI GATC 3 cut(s) 30, 129, 669
DpnII GATC 3 cut(s) 28, 127, 667
DriI GACNNNNNGTC 1 cut(s) 326
EaeI YGGCCR 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 434
Eam1105I GACNNNNNGTC 1 cut(s) 326
EarI CTCTTC 1 cut(s) 434
Eco130I CCWWGG 1 cut(s) 643
Eco47III AGCGCT 1 cut(s) 258
EcoT14I CCWWGG 1 cut(s) 643
EcoT22I ATGCAT 1 cut(s) 494
ErhI CCWWGG 1 cut(s) 643
FaeI CATG 5 cut(s) 107, 290, 422, 575, 642
FaqI GGGAC 2 cut(s) 275, 369
FatI CATG 5 cut(s) 103, 286, 418, 571, 638
FauI CCCGC 3 cut(s) 290, 394, 634
FbaI TGATCA 2 cut(s) 28, 667
Fnu4HI GCNGC 4 cut(s) 144, 243, 513, 516
FokI GGATG 1 cut(s) 687
Fsp4HI GCNGC 4 cut(s) 144, 243, 513, 516
FspBI CTAG 3 cut(s) 137, 254, 654
GlaI GCGC 1 cut(s) 258
GluI GCNGC 4 cut(s) 144, 243, 513, 516
HaeII RGCGCY 1 cut(s) 260
HaeIII GGCC 2 cut(s) 245, 426
HapII CCGG 1 cut(s) 390
HhaI GCGC 1 cut(s) 259
Hin1II CATG 5 cut(s) 107, 290, 422, 575, 642
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HincII GTYRAC 1 cut(s) 622
HindII GTYRAC 1 cut(s) 622
HinfI GANTC 2 cut(s) 122, 635
HpaII CCGG 1 cut(s) 390
Hpy166II GTNNAC 1 cut(s) 622
Hpy188I TCNGA 1 cut(s) 127
Hpy188III TCNNGA 2 cut(s) 131, 161
Hpy8I GTNNAC 1 cut(s) 622
HpyAV CCTTC 4 cut(s) 277, 349, 457, 529
HpyCH4III ACNGT 1 cut(s) 383
HpyCH4V TGCA 7 cut(s) 56, 65, 151, 302, 492, 540, 678
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 1 cut(s) 202
Hsp92II CATG 5 cut(s) 107, 290, 422, 575, 642
HspAI GCGC 1 cut(s) 257
Ksp22I TGATCA 2 cut(s) 28, 667
KspI CCGCGG 1 cut(s) 630
Kzo9I GATC 3 cut(s) 28, 127, 667
LpnPI CCDG 3 cut(s) 144, 174, 403
Lsp1109I GCAGC 1 cut(s) 499
LweI GCATC 1 cut(s) 665
MaeI CTAG 3 cut(s) 137, 254, 654
MaeIII GTNAC 2 cut(s) 439, 656
MalI GATC 3 cut(s) 30, 129, 669
MboI GATC 3 cut(s) 28, 127, 667
MboII GAAGA 4 cut(s) 421, 442, 536, 644
MfeI CAATTG 1 cut(s) 399
MluCI AATT 7 cut(s) 96, 219, 273, 303, 399, 598, 603
MmeI TCCRAC 1 cut(s) 100
MnlI CCTC 8 cut(s) 92, 162, 197, 289, 303, 437, 533, 579
Mph1103I ATGCAT 1 cut(s) 494
MseI TTAA 2 cut(s) 15, 579
MspA1I CMGCKG 2 cut(s) 242, 629
MspI CCGG 1 cut(s) 390
MunI CAATTG 1 cut(s) 399
MvnI CGCG 1 cut(s) 629
MwoI GCNNNNNNNGC 1 cut(s) 62
NdeII GATC 3 cut(s) 28, 127, 667
NlaIII CATG 5 cut(s) 107, 290, 422, 575, 642
NsiI ATGCAT 1 cut(s) 494
PfeI GAWTC 2 cut(s) 122, 635
PkrI GCNGC 4 cut(s) 145, 244, 514, 517
RsaI GTAC 4 cut(s) 185, 531, 584, 652
RsaNI GTAC 4 cut(s) 184, 530, 583, 651
SacII CCGCGG 1 cut(s) 630
SaqAI TTAA 2 cut(s) 15, 579
SatI GCNGC 4 cut(s) 144, 243, 513, 516
Sau3AI GATC 3 cut(s) 28, 127, 667
SetI ASST 4 cut(s) 138, 189, 571, 663
SfaNI GCATC 1 cut(s) 665
Sfr303I CCGCGG 1 cut(s) 630
SgrBI CCGCGG 1 cut(s) 630
SpeI ACTAGT 1 cut(s) 653
Sse9I AATT 7 cut(s) 96, 219, 273, 303, 399, 598, 603
SspI AATATT 1 cut(s) 560
SspMI CTAG 3 cut(s) 137, 254, 654
StyI CCWWGG 1 cut(s) 643
TaaI ACNGT 1 cut(s) 383
TasI AATT 7 cut(s) 96, 219, 273, 303, 399, 598, 603
TatI WGTACW 1 cut(s) 529
TauI GCSGC 3 cut(s) 146, 245, 518
TfiI GAWTC 2 cut(s) 122, 635
Tru1I TTAA 2 cut(s) 15, 579
Tru9I TTAA 2 cut(s) 15, 579
TscAI CASTG 2 cut(s) 153, 304
TseI GCWGC 1 cut(s) 512
TspDTI ATGAA 1 cut(s) 442
TspRI CASTG 2 cut(s) 153, 304
XapI RAATTY 1 cut(s) 273
XcmI CCANNNNNNNNNTGG 1 cut(s) 477
XspI CTAG 3 cut(s) 137, 254, 654
Zsp2I ATGCAT 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.