Rh7BG063000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000512
Physical Location & Seq
Forward (+)
4184067 .. 4184558
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG063000.1

Sequence Viewer

Length: 492 bp
ATGAAGTATACCGTGGAGAATACAAAGGCATATGTTCGCAGAGTCTTTGCAAAACTTGGTTGGGTTCCTGATACTCGTGATCAAGAAATGGCTCAACCAGTAGCTGCAGCAGCGCCTAGACAACCCAACCACCTACTAGATTATTGGGCAAAGATACTTGTTGTATTCTGCTCGGCATCCGCTATTGACATGGCTCTCCTCTCCGCCCAAATTCACTCTCAACTCCCTACAATCTTTTGCTTCCTCGGATTAACCATCATACTTGCCTTTACTTGCTTCTTTGTAGGCAGATGTATTCACTCCAACTTTGAACAAACAGCTCTGGTGCTCCAGCGATTCGGCCTTTTCTTTGGAGTCACTGCAATCTTCATAGCTATCACCATTCCATTTCCTTTGTGGTTCAAATGCGTCACCTGCTTCATCTATGTGCTATGCTGTGCACATGTAATTGGCACCTTCCATTTAGTCGAGATGACCAAAAAGCCCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

18.43

Weight (kDa)

8.85

Isoelectric Point (pI)

26.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 422
Acc36I ACCTGC 1 cut(s) 422
AccB1I GGYRCC 1 cut(s) 452
AccI GTMKAC 1 cut(s) 8
AciI CCGC 2 cut(s) 180, 204
AcsI RAATTY 1 cut(s) 210
AflIII ACRYGT 1 cut(s) 442
AgsI TTSAA 2 cut(s) 311, 403
AluBI AGCT 3 cut(s) 104, 320, 374
AluI AGCT 3 cut(s) 104, 320, 374
Alw21I GWGCWC 2 cut(s) 330, 442
Alw44I GTGCAC 1 cut(s) 438
AlwNI CAGNNNCTG 1 cut(s) 104
AoxI GGCC 1 cut(s) 340
ApaLI GTGCAC 1 cut(s) 438
ApeKI GCWGC 3 cut(s) 104, 107, 110
ApoI RAATTY 1 cut(s) 210
AspLEI GCGC 1 cut(s) 115
AsuHPI GGTGA 2 cut(s) 370, 403
BaeGI GKGCMC 1 cut(s) 442
BanI GGYRCC 1 cut(s) 452
BauI CACGAG 1 cut(s) 75
Bbv12I GWGCWC 2 cut(s) 330, 442
BbvI GCAGC 3 cut(s) 91, 119, 122
BccI CCATC 1 cut(s) 263
BclI TGATCA 1 cut(s) 79
BfaI CTAG 2 cut(s) 117, 137
BfmI CTRYAG 1 cut(s) 105
BfoI RGCGCY 1 cut(s) 116
BfuAI ACCTGC 1 cut(s) 422
BisI GCNGC 3 cut(s) 105, 108, 111
BlsI GCNGC 3 cut(s) 106, 109, 112
BmiI GGNNCC 2 cut(s) 66, 454
BmsI GCATC 1 cut(s) 185
BpmI CTGGAG 1 cut(s) 314
BsaJI CCNNGG 2 cut(s) 12, 244
Bse1I ACTGG 1 cut(s) 98
BseDI CCNNGG 2 cut(s) 12, 244
BseGI GGATG 1 cut(s) 176
BseNI ACTGG 1 cut(s) 98
BseRI GAGGAG 1 cut(s) 188
BseSI GKGCMC 1 cut(s) 442
BseXI GCAGC 3 cut(s) 91, 119, 122
BshFI GGCC 1 cut(s) 342
BshNI GGYRCC 1 cut(s) 452
BsiHKAI GWGCWC 2 cut(s) 330, 442
BsnI GGCC 1 cut(s) 342
Bsp1286I GDGCHC 2 cut(s) 330, 442
Bsp143I GATC 1 cut(s) 79
BspACI CCGC 2 cut(s) 180, 204
BspANI GGCC 1 cut(s) 342
BspLI GGNNCC 2 cut(s) 66, 454
BspMAI CTGCAG 1 cut(s) 109
BspMI ACCTGC 1 cut(s) 422
BspT107I GGYRCC 1 cut(s) 452
BsrI ACTGG 1 cut(s) 98
BssECI CCNNGG 2 cut(s) 12, 244
BssMI GATC 1 cut(s) 79
BssNAI GTATAC 1 cut(s) 9
BssSI CACGAG 1 cut(s) 75
Bst1107I GTATAC 1 cut(s) 9
Bst2BI CACGAG 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 13
BstDSI CCRYGG 1 cut(s) 12
BstF5I GGATG 1 cut(s) 176
BstH2I RGCGCY 1 cut(s) 116
BstHHI GCGC 1 cut(s) 115
BstKTI GATC 1 cut(s) 82
BstMBI GATC 1 cut(s) 79
BstMWI GCNNNNNNNGC 2 cut(s) 110, 414
BstNSI RCATGY 1 cut(s) 446
BstSFI CTRYAG 1 cut(s) 105
BstSLI GKGCMC 1 cut(s) 442
BstV1I GCAGC 3 cut(s) 91, 119, 122
BstZ17I GTATAC 1 cut(s) 9
BsuRI GGCC 1 cut(s) 342
BtgI CCRYGG 1 cut(s) 12
BtsCI GGATG 1 cut(s) 176
BtsI GCAGTG 1 cut(s) 357
BtsIMutI CAGTG 1 cut(s) 357
BveI ACCTGC 1 cut(s) 422
CaiI CAGNNNCTG 1 cut(s) 104
CfoI GCGC 1 cut(s) 115
CseI GACGC 1 cut(s) 397
CviAII CATG 2 cut(s) 190, 443
CviJI RGCY 7 cut(s) 92, 104, 194, 320, 342, 374, 484
CviKI_1 RGCY 7 cut(s) 92, 104, 194, 320, 342, 374, 484
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
EciI GGCGGA 1 cut(s) 193
FaeI CATG 2 cut(s) 193, 446
FaiI YATR 9 cut(s) 9, 31, 33, 191, 260, 371, 426, 433, 444
FatI CATG 2 cut(s) 189, 442
FauNDI CATATG 1 cut(s) 31
FbaI TGATCA 1 cut(s) 79
FblI GTMKAC 1 cut(s) 8
Fnu4HI GCNGC 3 cut(s) 105, 108, 111
FokI GGATG 1 cut(s) 163
Fsp4HI GCNGC 3 cut(s) 105, 108, 111
FspBI CTAG 2 cut(s) 117, 137
GlaI GCGC 1 cut(s) 114
GluI GCNGC 3 cut(s) 105, 108, 111
GsuI CTGGAG 1 cut(s) 314
HaeII RGCGCY 1 cut(s) 116
HaeIII GGCC 1 cut(s) 342
HgaI GACGC 1 cut(s) 397
HhaI GCGC 1 cut(s) 115
Hin1II CATG 2 cut(s) 193, 446
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HinfI GANTC 3 cut(s) 42, 336, 354
HphI GGTGA 2 cut(s) 370, 403
Hpy166II GTNNAC 2 cut(s) 9, 440
Hpy188I TCNGA 1 cut(s) 248
Hpy188III TCNNGA 4 cut(s) 68, 77, 83, 469
Hpy8I GTNNAC 2 cut(s) 9, 440
HpyAV CCTTC 1 cut(s) 466
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4V TGCA 4 cut(s) 50, 107, 362, 440
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 414
Hsp92II CATG 2 cut(s) 193, 446
HspAI GCGC 1 cut(s) 113
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 1 cut(s) 79
LmnI GCTCC 1 cut(s) 333
LpnPI CCDG 5 cut(s) 81, 111, 308, 344, 427
Lsp1109I GCAGC 3 cut(s) 91, 119, 122
LweI GCATC 1 cut(s) 185
MaeI CTAG 2 cut(s) 117, 137
MaeIII GTNAC 2 cut(s) 355, 409
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MboII GAAGA 1 cut(s) 358
MhlI GDGCHC 2 cut(s) 330, 442
MluCI AATT 2 cut(s) 210, 447
MlyI GAGTC 2 cut(s) 51, 363
MmeI TCCRAC 1 cut(s) 327
MnlI CCTC 2 cut(s) 209, 254
MseI TTAA 1 cut(s) 251
MslI CAYNNNNRTG 1 cut(s) 425
MwoI GCNNNNNNNGC 2 cut(s) 110, 414
NdeI CATATG 1 cut(s) 31
NdeII GATC 1 cut(s) 79
NlaIII CATG 2 cut(s) 193, 446
NlaIV GGNNCC 2 cut(s) 66, 454
NmeAIII GCCGAG 1 cut(s) 152
NmuCI GTSAC 2 cut(s) 355, 409
NspI RCATGY 1 cut(s) 446
PaqCI CACCTGC 1 cut(s) 422
PciI ACATGT 1 cut(s) 442
PfeI GAWTC 1 cut(s) 336
PkrI GCNGC 3 cut(s) 106, 109, 112
PleI GAGTC 2 cut(s) 50, 362
PpsI GAGTC 2 cut(s) 50, 362
PscI ACATGT 1 cut(s) 442
PspN4I GGNNCC 2 cut(s) 66, 454
PstI CTGCAG 1 cut(s) 109
PstNI CAGNNNCTG 1 cut(s) 104
RseI CAYNNNNRTG 1 cut(s) 425
SaqAI TTAA 1 cut(s) 251
SatI GCNGC 3 cut(s) 105, 108, 111
Sau3AI GATC 1 cut(s) 79
SchI GAGTC 2 cut(s) 51, 363
SduI GDGCHC 2 cut(s) 330, 442
SetI ASST 6 cut(s) 106, 135, 322, 376, 416, 458
SfaNI GCATC 1 cut(s) 185
SfcI CTRYAG 1 cut(s) 105
SmiMI CAYNNNNRTG 1 cut(s) 425
Sse9I AATT 2 cut(s) 210, 447
SsiI CCGC 2 cut(s) 180, 204
SspMI CTAG 2 cut(s) 117, 137
TaaI ACNGT 1 cut(s) 13
TaqI TCGA 1 cut(s) 468
TasI AATT 2 cut(s) 210, 447
TfiI GAWTC 1 cut(s) 336
Tru1I TTAA 1 cut(s) 251
Tru9I TTAA 1 cut(s) 251
TscAI CASTG 1 cut(s) 364
TseFI GTSAC 2 cut(s) 355, 409
TseI GCWGC 3 cut(s) 104, 107, 110
Tsp45I GTSAC 2 cut(s) 355, 409
TspDTI ATGAA 3 cut(s) 17, 358, 409
TspRI CASTG 1 cut(s) 364
VneI GTGCAC 1 cut(s) 438
XapI RAATTY 1 cut(s) 210
XceI RCATGY 1 cut(s) 446
XcmI CCANNNNNNNNNTGG 1 cut(s) 393
XmiI GTMKAC 1 cut(s) 8
XspI CTAG 2 cut(s) 117, 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.