RLG00000026751

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000512
Physical Location & Seq
Forward (+)
5624838 .. 5625693
856 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026751

Sequence Viewer

Length: 705 bp
ATGAACGTGGTTGCTGTTGCCGTGTCTCCCATTTCTCTAAACCCTTTGGGTAGAGAGAGAGGCTCTATCTTTGACTCTCCGGTGTCCATTGACTCACACGAACATTGCGTCTCCGGTGTCCATTATAGTCATACATTGCATGGTGCATGGGTCAACCAGTCTATTTCCTCACAGCTTCCTAACTCCCATGTAGTCGCAGACACTATAAAAGGAGATGATGATTCAAGATCACATTACAACACCAACAACATGAAGTATACTAAAATTGATTTGAAGGCATTAGCCCTCCAAATTCTTACAAAACTCGGCTGGATTCATCATCCAGATGAAGAAGAAACTGATCAACCACCGGTAGCTAGAAACCGCAGCTTAGACTGGGTGAAGATATTTGTTGTGTTTGGCTCGGCCTCCGCTATTGAAATGGCTCTTCTATCCGCCCAAATCCACTCTCAGCTCCCGGCAATCTTCTGCGTCCTCGGACTCACCATCATAATGTCCTTTACTTGCTTCTTTGTTAGCAATGCCATTCACTTCAACTATCTGATAGTGGCTGATGTGCTCGAGCGAGTTGGCATTTTCTTTGGGGTCACGGCAATCTTCATATGCATCAGTATTCCCTTTCCCTTGTGGTTCAAATGCGTCACGTGCTTCATCTATGTGCTCTGTTGGTTTACAATCTTGTTTTGTAATTACTTCCATTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

235

Amino Acids

26.22

Weight (kDa)

6.14

Isoelectric Point (pI)

39.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 257
AciI CCGC 3 cut(s) 364, 411, 435
AcsI RAATTY 1 cut(s) 291
AcvI CACGTG 1 cut(s) 645
AgeI ACCGGT 1 cut(s) 349
AgsI TTSAA 5 cut(s) 225, 274, 419, 535, 634
AluBI AGCT 4 cut(s) 175, 356, 369, 454
AluI AGCT 4 cut(s) 175, 356, 369, 454
Alw21I GWGCWC 2 cut(s) 561, 663
Alw26I GTCTC 2 cut(s) 30, 115
Ama87I CYCGRG 1 cut(s) 560
AoxI GGCC 1 cut(s) 405
ApeKI GCWGC 1 cut(s) 366
ApoI RAATTY 1 cut(s) 291
ArsI GACNNNNNNTTYG 2 cut(s) 93, 125
AsiGI ACCGGT 1 cut(s) 349
AsuC2I CCSGG 1 cut(s) 458
AsuHPI GGTGA 2 cut(s) 391, 475
AvaI CYCGRG 1 cut(s) 560
BbrPI CACGTG 1 cut(s) 645
Bbv12I GWGCWC 2 cut(s) 561, 663
BbvI GCAGC 1 cut(s) 378
BccI CCATC 1 cut(s) 494
BceAI ACGGC 2 cut(s) 5, 606
BclI TGATCA 1 cut(s) 340
BcnI CCSGG 1 cut(s) 458
BcoDI GTCTC 2 cut(s) 30, 115
BfaI CTAG 1 cut(s) 357
BisI GCNGC 1 cut(s) 367
BlsI GCNGC 1 cut(s) 368
Bme1390I CCNGG 1 cut(s) 458
BmeT110I CYCGRG 1 cut(s) 560
BmrFI CCNGG 1 cut(s) 458
BmrI ACTGGG 1 cut(s) 385
BmsI GCATC 1 cut(s) 615
BmuI ACTGGG 1 cut(s) 385
BplI GAGNNNNNCTC 2 cut(s) 47, 79
BpuMI CCSGG 1 cut(s) 458
BsaAI YACGTR 1 cut(s) 645
BsaJI CCNNGG 1 cut(s) 475
BsaWI WCCGGW 3 cut(s) 79, 113, 349
Bse118I RCCGGY 1 cut(s) 349
Bse1I ACTGG 2 cut(s) 157, 380
Bse3DI GCAATG 3 cut(s) 103, 134, 526
BseDI CCNNGG 1 cut(s) 475
BseGI GGATG 1 cut(s) 319
BseMI GCAATG 3 cut(s) 103, 134, 526
BseMII CTCAG 1 cut(s) 464
BseNI ACTGG 2 cut(s) 157, 380
BseXI GCAGC 1 cut(s) 378
BshFI GGCC 1 cut(s) 407
BshTI ACCGGT 1 cut(s) 349
BsiHKAI GWGCWC 2 cut(s) 561, 663
BsiHKCI CYCGRG 1 cut(s) 560
BsiSI CCGG 4 cut(s) 80, 114, 350, 458
BsmAI GTCTC 2 cut(s) 30, 115
BsmBI CGTCTC 1 cut(s) 115
BsnI GGCC 1 cut(s) 407
BsoBI CYCGRG 1 cut(s) 560
Bsp1286I GDGCHC 2 cut(s) 561, 663
Bsp143I GATC 2 cut(s) 227, 340
BspACI CCGC 3 cut(s) 364, 411, 435
BspANI GGCC 1 cut(s) 407
BspCNI CTCAG 1 cut(s) 463
BspQI GCTCTTC 1 cut(s) 432
BsrDI GCAATG 3 cut(s) 103, 134, 526
BsrFI RCCGGY 1 cut(s) 349
BsrI ACTGG 2 cut(s) 157, 380
BssAI RCCGGY 1 cut(s) 349
BssECI CCNNGG 1 cut(s) 475
BssMI GATC 2 cut(s) 227, 340
BssNAI GTATAC 1 cut(s) 258
Bst1107I GTATAC 1 cut(s) 258
Bst6I CTCTTC 1 cut(s) 432
BstBAI YACGTR 1 cut(s) 645
BstDEI CTNAG 3 cut(s) 370, 450, 702
BstF5I GGATG 1 cut(s) 319
BstKTI GATC 2 cut(s) 230, 343
BstMAI GTCTC 2 cut(s) 30, 115
BstMBI GATC 2 cut(s) 227, 340
BstMWI GCNNNNNNNGC 1 cut(s) 645
BstSCI CCNGG 1 cut(s) 456
BstV1I GCAGC 1 cut(s) 378
BstZ17I GTATAC 1 cut(s) 258
BsuRI GGCC 1 cut(s) 407
BtsCI GGATG 1 cut(s) 319
Cfr10I RCCGGY 1 cut(s) 349
CseI GACGC 3 cut(s) 97, 460, 628
CspAI ACCGGT 1 cut(s) 349
CviAII CATG 4 cut(s) 140, 147, 188, 250
DdeI CTNAG 3 cut(s) 370, 450, 702
DpnI GATC 2 cut(s) 229, 342
DpnII GATC 2 cut(s) 227, 340
Eam1104I CTCTTC 1 cut(s) 432
EarI CTCTTC 1 cut(s) 432
EciI GGCGGA 1 cut(s) 424
Eco72I CACGTG 1 cut(s) 645
Eco88I CYCGRG 1 cut(s) 560
EcoT22I ATGCAT 1 cut(s) 608
Esp3I CGTCTC 1 cut(s) 115
FaeI CATG 4 cut(s) 143, 150, 191, 253
FatI CATG 4 cut(s) 139, 146, 187, 249
FauNDI CATATG 1 cut(s) 602
FbaI TGATCA 1 cut(s) 340
FblI GTMKAC 1 cut(s) 257
Fnu4HI GCNGC 1 cut(s) 367
FokI GGATG 1 cut(s) 306
Fsp4HI GCNGC 1 cut(s) 367
FspBI CTAG 1 cut(s) 357
GluI GCNGC 1 cut(s) 367
HaeIII GGCC 1 cut(s) 407
HapII CCGG 4 cut(s) 80, 114, 350, 458
HgaI GACGC 3 cut(s) 97, 460, 628
Hin1II CATG 4 cut(s) 143, 150, 191, 253
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 5 cut(s) 74, 92, 221, 313, 480
HpaII CCGG 4 cut(s) 80, 114, 350, 458
HphI GGTGA 2 cut(s) 391, 475
Hpy166II GTNNAC 3 cut(s) 154, 258, 672
Hpy188I TCNGA 2 cut(s) 479, 543
Hpy188III TCNNGA 2 cut(s) 225, 323
Hpy8I GTNNAC 3 cut(s) 154, 258, 672
HpyAV CCTTC 1 cut(s) 268
HpyCH4IV ACGT 2 cut(s) 6, 644
HpyCH4V TGCA 3 cut(s) 139, 146, 606
HpyF10VI GCNNNNNNNGC 1 cut(s) 645
HpyF3I CTNAG 3 cut(s) 370, 450, 702
HpySE526I ACGT 2 cut(s) 6, 644
Hsp92II CATG 4 cut(s) 143, 150, 191, 253
Ksp22I TGATCA 1 cut(s) 340
Kzo9I GATC 2 cut(s) 227, 340
LguI GCTCTTC 1 cut(s) 432
LmnI GCTCC 1 cut(s) 459
LpnPI CCDG 8 cut(s) 93, 127, 170, 295, 336, 361, 363, 471
Lsp1109I GCAGC 1 cut(s) 378
LweI GCATC 1 cut(s) 615
MaeI CTAG 1 cut(s) 357
MaeII ACGT 2 cut(s) 6, 644
MaeIII GTNAC 2 cut(s) 586, 640
MalI GATC 2 cut(s) 229, 342
MboI GATC 2 cut(s) 227, 340
MboII GAAGA 6 cut(s) 341, 344, 394, 419, 457, 589
MhlI GDGCHC 2 cut(s) 561, 663
MluCI AATT 3 cut(s) 264, 291, 688
MlyI GAGTC 3 cut(s) 68, 86, 474
MnlI CCTC 5 cut(s) 53, 178, 296, 418, 485
Mph1103I ATGCAT 1 cut(s) 608
MslI CAYNNNNRTG 3 cut(s) 324, 491, 656
MspI CCGG 4 cut(s) 80, 114, 350, 458
MspR9I CCNGG 1 cut(s) 458
MwoI GCNNNNNNNGC 1 cut(s) 645
NciI CCSGG 1 cut(s) 458
NdeI CATATG 1 cut(s) 602
NdeII GATC 2 cut(s) 227, 340
NlaIII CATG 4 cut(s) 143, 150, 191, 253
NmeAIII GCCGAG 2 cut(s) 285, 383
NmuCI GTSAC 2 cut(s) 586, 640
NsiI ATGCAT 1 cut(s) 608
PaeR7I CTCGAG 1 cut(s) 560
PciSI GCTCTTC 1 cut(s) 432
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PfeI GAWTC 2 cut(s) 221, 313
PinAI ACCGGT 1 cut(s) 349
PkrI GCNGC 1 cut(s) 368
PleI GAGTC 3 cut(s) 68, 86, 474
PmaCI CACGTG 1 cut(s) 645
PmlI CACGTG 1 cut(s) 645
PpsI GAGTC 3 cut(s) 68, 86, 474
Ppu21I YACGTR 1 cut(s) 645
PspCI CACGTG 1 cut(s) 645
PspXI VCTCGAGB 1 cut(s) 560
RseI CAYNNNNRTG 3 cut(s) 324, 491, 656
SapI GCTCTTC 1 cut(s) 432
SatI GCNGC 1 cut(s) 367
Sau3AI GATC 2 cut(s) 227, 340
SchI GAGTC 3 cut(s) 68, 86, 474
ScrFI CCNGG 1 cut(s) 458
SduI GDGCHC 2 cut(s) 561, 663
SetI ASST 6 cut(s) 9, 177, 358, 371, 456, 647
SfaNI GCATC 1 cut(s) 615
Sfr274I CTCGAG 1 cut(s) 560
SlaI CTCGAG 1 cut(s) 560
SmiMI CAYNNNNRTG 3 cut(s) 324, 491, 656
SmlI CTYRAG 1 cut(s) 560
SmoI CTYRAG 1 cut(s) 560
Sse9I AATT 3 cut(s) 264, 291, 688
SsiI CCGC 3 cut(s) 364, 411, 435
SspMI CTAG 1 cut(s) 357
StyD4I CCNGG 1 cut(s) 456
TaiI ACGT 2 cut(s) 9, 647
TaqI TCGA 1 cut(s) 561
TasI AATT 3 cut(s) 264, 291, 688
TfiI GAWTC 2 cut(s) 221, 313
TseFI GTSAC 2 cut(s) 586, 640
TseI GCWGC 1 cut(s) 366
Tsp45I GTSAC 2 cut(s) 586, 640
TspDTI ATGAA 6 cut(s) 17, 266, 305, 342, 589, 640
XapI RAATTY 1 cut(s) 291
XhoI CTCGAG 1 cut(s) 560
XmiI GTMKAC 1 cut(s) 257
XspI CTAG 1 cut(s) 357
Zsp2I ATGCAT 1 cut(s) 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.