Prupe.6G011700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000512
Physical Location & Seq
Reverse (-)
848361 .. 849047
687 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G011700.1

Sequence Viewer

Length: 687 bp
ATGAAGCATGTTATTATTAATACTGTTTATGATCACTACTTAAAGCCTCTTCTCATTGCAATTACTACAAAGATCCTACAACTAGTCAAATCTCTTATAATTAGTCCGCTTGATCATGATGATTATGATCCTAATCTTGATGATCCCGAAGCCGCACTACAAGTAGCAGAAGCAGCAGCAGCTTATTCTTATAGAGATAGGAGGAGGAGGAGGAACAACAAGAACAAGTTAGATTGGGCAAAGATAATTGTGGTGTTTTGCTTCACAGCTGCAATTGGACTTGCCCTTCTGCCCCTCCAACTTCACGACTCTCATGAGCTCCCTCTGAACTTCTACTTTCTTGGACTCACAGTCTTACTTGCCTTCACTTGTATCTTGGTCAGCAAATTTGTTCACTTCAACTACTGTCCTGCAGGCATATCAATCTCCTACCTCTTCCACAATTTGGGCCTCTTTTTCGGATTCACTGCCTTCCTCATATCCATCACCATCCCTTTTCCTCTCTGGTTCAAATGCACTGCCTATTCCATCTATGTAGCCGCCTGCTTCTTCATAATTCTTTGTAATCTTCGCTTCAATAAATATTACAAACCTCATAATTTGAAGCACCCAAATCCACAAAATTTTGAAAACAACGTCGTCGTCAATGATCCTGCAGTACTGGAATCATCCTCGTCATCAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

229

Amino Acids

26.02

Weight (kDa)

8.47

Isoelectric Point (pI)

50.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 98
AccB7I CCANNNNNTGG 1 cut(s) 445
AciI CCGC 3 cut(s) 107, 153, 540
AclWI GGATC 4 cut(s) 67, 122, 137, 644
AcsI RAATTY 2 cut(s) 386, 622
AfaI GTAC 1 cut(s) 660
AfiI CCNNNNNNNGG 1 cut(s) 445
AgsI TTSAA 5 cut(s) 400, 511, 577, 604, 629
AhdI GACNNNNNGTC 1 cut(s) 350
AhlI ACTAGT 1 cut(s) 82
AluBI AGCT 4 cut(s) 182, 269, 319, 684
AluI AGCT 4 cut(s) 182, 269, 319, 684
Alw21I GWGCWC 1 cut(s) 321
AlwI GGATC 4 cut(s) 67, 122, 137, 644
AoxI GGCC 1 cut(s) 448
ApeKI GCWGC 4 cut(s) 173, 176, 179, 269
ApoI RAATTY 2 cut(s) 386, 622
AseI ATTAAT 1 cut(s) 18
AspS9I GGNCC 1 cut(s) 448
AsuHPI GGTGA 1 cut(s) 478
BanII GRGCYC 1 cut(s) 321
BarI GAAGNNNNNNTAC 2 cut(s) 141, 173
Bbv12I GWGCWC 1 cut(s) 321
BbvI GCAGC 4 cut(s) 185, 188, 191, 256
BccI CCATC 3 cut(s) 491, 497, 536
BclI TGATCA 2 cut(s) 31, 112
BcuI ACTAGT 1 cut(s) 82
BfaI CTAG 2 cut(s) 83, 685
BfmI CTRYAG 2 cut(s) 411, 654
BisI GCNGC 6 cut(s) 153, 174, 177, 180, 270, 540
BlsI GCNGC 6 cut(s) 154, 175, 178, 181, 271, 541
BmcAI AGTACT 1 cut(s) 660
BmeRI GACNNNNNGTC 1 cut(s) 350
BmgT120I GGNCC 1 cut(s) 448
BsaBI GATNNNNATC 2 cut(s) 126, 132
Bsc4I CCNNNNNNNGG 1 cut(s) 445
Bse1I ACTGG 1 cut(s) 666
Bse3DI GCAATG 1 cut(s) 54
Bse8I GATNNNNATC 2 cut(s) 126, 132
BseGI GGATG 2 cut(s) 489, 668
BseJI GATNNNNATC 2 cut(s) 126, 132
BseLI CCNNNNNNNGG 1 cut(s) 445
BseMI GCAATG 1 cut(s) 54
BseNI ACTGG 1 cut(s) 666
BseRI GAGGAG 3 cut(s) 217, 220, 223
BseXI GCAGC 4 cut(s) 185, 188, 191, 256
BshFI GGCC 1 cut(s) 450
BsiHKAI GWGCWC 1 cut(s) 321
BslI CCNNNNNNNGG 1 cut(s) 445
BsnI GGCC 1 cut(s) 450
Bsp1286I GDGCHC 1 cut(s) 321
Bsp143I GATC 6 cut(s) 31, 72, 112, 127, 142, 649
BspACI CCGC 3 cut(s) 107, 153, 540
BspANI GGCC 1 cut(s) 450
BspHI TCATGA 2 cut(s) 115, 313
BspMAI CTGCAG 2 cut(s) 415, 658
BspPI GGATC 4 cut(s) 67, 122, 137, 644
BsrDI GCAATG 1 cut(s) 54
BsrI ACTGG 1 cut(s) 666
BssMI GATC 6 cut(s) 31, 72, 112, 127, 142, 649
Bst4CI ACNGT 3 cut(s) 25, 352, 407
Bst6I CTCTTC 2 cut(s) 54, 440
BstC8I GCNNGC 2 cut(s) 415, 544
BstF5I GGATG 2 cut(s) 489, 668
BstKTI GATC 6 cut(s) 34, 75, 115, 130, 145, 652
BstMBI GATC 6 cut(s) 31, 72, 112, 127, 142, 649
BstMWI GCNNNNNNNGC 2 cut(s) 173, 179
BstNSI RCATGY 1 cut(s) 11
BstSFI CTRYAG 2 cut(s) 411, 654
BstV1I GCAGC 4 cut(s) 185, 188, 191, 256
BstX2I RGATCY 1 cut(s) 72
BstYI RGATCY 1 cut(s) 72
BsuRI GGCC 1 cut(s) 450
BtsCI GGATG 2 cut(s) 489, 668
BtsI GCAGTG 2 cut(s) 465, 516
BtsIMutI CAGTG 2 cut(s) 465, 516
Cac8I GCNNGC 2 cut(s) 415, 544
CciI TCATGA 2 cut(s) 115, 313
Cfr13I GGNCC 1 cut(s) 448
Csp6I GTAC 1 cut(s) 659
CviAII CATG 3 cut(s) 8, 116, 314
CviJI RGCY 8 cut(s) 46, 152, 182, 269, 319, 450, 539, 684
CviKI_1 RGCY 8 cut(s) 46, 152, 182, 269, 319, 450, 539, 684
CviQI GTAC 1 cut(s) 659
DpnI GATC 6 cut(s) 33, 74, 114, 129, 144, 651
DpnII GATC 6 cut(s) 31, 72, 112, 127, 142, 649
DriI GACNNNNNGTC 1 cut(s) 350
Eam1104I CTCTTC 2 cut(s) 54, 440
Eam1105I GACNNNNNGTC 1 cut(s) 350
EarI CTCTTC 2 cut(s) 54, 440
Ecl136II GAGCTC 1 cut(s) 319
Eco24I GRGCYC 1 cut(s) 321
Eco53kI GAGCTC 1 cut(s) 319
EcoICRI GAGCTC 1 cut(s) 319
EcoT38I GRGCYC 1 cut(s) 321
FaeI CATG 3 cut(s) 11, 119, 317
FatI CATG 3 cut(s) 7, 115, 313
FbaI TGATCA 2 cut(s) 31, 112
Fnu4HI GCNGC 6 cut(s) 153, 174, 177, 180, 270, 540
FokI GGATG 2 cut(s) 476, 655
FriOI GRGCYC 1 cut(s) 321
Fsp4HI GCNGC 6 cut(s) 153, 174, 177, 180, 270, 540
FspBI CTAG 2 cut(s) 83, 685
GluI GCNGC 6 cut(s) 153, 174, 177, 180, 270, 540
HaeIII GGCC 1 cut(s) 450
Hin1II CATG 3 cut(s) 11, 119, 317
HinfI GANTC 4 cut(s) 308, 345, 462, 665
HphI GGTGA 1 cut(s) 478
Hpy166II GTNNAC 1 cut(s) 394
Hpy188I TCNGA 2 cut(s) 327, 461
Hpy188III TCNNGA 5 cut(s) 116, 137, 146, 305, 314
Hpy8I GTNNAC 1 cut(s) 394
Hpy99I CGWCG 2 cut(s) 641, 644
HpyAV CCTTC 3 cut(s) 296, 373, 481
HpyCH4III ACNGT 3 cut(s) 25, 352, 407
HpyCH4IV ACGT 1 cut(s) 636
HpyCH4V TGCA 5 cut(s) 59, 272, 413, 516, 656
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 179
HpySE526I ACGT 1 cut(s) 636
Hsp92II CATG 3 cut(s) 11, 119, 317
Ksp22I TGATCA 2 cut(s) 31, 112
Kzo9I GATC 6 cut(s) 31, 72, 112, 127, 142, 649
LmnI GCTCC 1 cut(s) 324
LpnPI CCDG 6 cut(s) 399, 423, 490, 556, 647, 666
Lsp1109I GCAGC 4 cut(s) 185, 188, 191, 256
MaeI CTAG 2 cut(s) 83, 685
MaeII ACGT 1 cut(s) 636
MalI GATC 6 cut(s) 33, 74, 114, 129, 144, 651
MboI GATC 6 cut(s) 31, 72, 112, 127, 142, 649
MboII GAAGA 4 cut(s) 41, 427, 541, 560
MfeI CAATTG 1 cut(s) 273
MflI RGATCY 1 cut(s) 72
MhlI GDGCHC 1 cut(s) 321
MluCI AATT 9 cut(s) 60, 99, 246, 273, 386, 442, 555, 598, 622
MlyI GAGTC 2 cut(s) 302, 339
MmeI TCCRAC 1 cut(s) 322
MseI TTAA 2 cut(s) 18, 41
MspA1I CMGCKG 1 cut(s) 269
MunI CAATTG 1 cut(s) 273
MwoI GCNNNNNNNGC 2 cut(s) 173, 179
NdeII GATC 6 cut(s) 31, 72, 112, 127, 142, 649
NlaIII CATG 3 cut(s) 11, 119, 317
NspI RCATGY 1 cut(s) 11
PagI TCATGA 2 cut(s) 115, 313
PfeI GAWTC 2 cut(s) 462, 665
PflMI CCANNNNNTGG 1 cut(s) 445
PkrI GCNGC 6 cut(s) 154, 175, 178, 181, 271, 541
PleI GAGTC 2 cut(s) 302, 339
PpsI GAGTC 2 cut(s) 302, 339
PshBI ATTAAT 1 cut(s) 18
PsiI TTATAA 1 cut(s) 98
Psp124BI GAGCTC 1 cut(s) 321
PspPI GGNCC 1 cut(s) 448
PstI CTGCAG 2 cut(s) 415, 658
PsuI RGATCY 1 cut(s) 72
PvuII CAGCTG 1 cut(s) 269
RsaI GTAC 1 cut(s) 660
RsaNI GTAC 1 cut(s) 659
SacI GAGCTC 1 cut(s) 321
SaqAI TTAA 2 cut(s) 18, 41
SatI GCNGC 6 cut(s) 153, 174, 177, 180, 270, 540
Sau3AI GATC 6 cut(s) 31, 72, 112, 127, 142, 649
Sau96I GGNCC 1 cut(s) 448
SbfI CCTGCAGG 1 cut(s) 415
ScaI AGTACT 1 cut(s) 660
SchI GAGTC 2 cut(s) 302, 339
SdaI CCTGCAGG 1 cut(s) 415
SduI GDGCHC 1 cut(s) 321
SetI ASST 7 cut(s) 184, 271, 321, 435, 595, 639, 686
SfcI CTRYAG 2 cut(s) 411, 654
SpeI ACTAGT 1 cut(s) 82
Sse8387I CCTGCAGG 1 cut(s) 415
Sse9I AATT 9 cut(s) 60, 99, 246, 273, 386, 442, 555, 598, 622
SsiI CCGC 3 cut(s) 107, 153, 540
SspI AATATT 1 cut(s) 584
SspMI CTAG 2 cut(s) 83, 685
SstI GAGCTC 1 cut(s) 321
TaaI ACNGT 3 cut(s) 25, 352, 407
TaiI ACGT 1 cut(s) 639
TasI AATT 9 cut(s) 60, 99, 246, 273, 386, 442, 555, 598, 622
TatI WGTACW 1 cut(s) 658
TauI GCSGC 2 cut(s) 155, 542
TfiI GAWTC 2 cut(s) 462, 665
Tru1I TTAA 2 cut(s) 18, 41
Tru9I TTAA 2 cut(s) 18, 41
TscAI CASTG 2 cut(s) 472, 523
TseI GCWGC 4 cut(s) 173, 176, 179, 269
TspDTI ATGAA 2 cut(s) 17, 541
TspRI CASTG 2 cut(s) 472, 523
Van91I CCANNNNNTGG 1 cut(s) 445
VspI ATTAAT 1 cut(s) 18
XapI RAATTY 2 cut(s) 386, 622
XceI RCATGY 1 cut(s) 11
XspI CTAG 2 cut(s) 83, 685
ZrmI AGTACT 1 cut(s) 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.