Rroxscaffold_3G00270060

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000512
Physical Location & Seq
Reverse (-)
62743867 .. 62744581
715 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00270060.1

Sequence Viewer

Length: 402 bp
ATGAACTCTGCAAAGTCATTCCTTACAAAAATGATCCCACTACTCCAGAAGATTGGGCACATTGCTGGCCCTGACCAAGAAGCAATTGTTGAAGTAGCTAAGCACCACAACTTGGATTCTGCAAAGATAATTGTGGTATTTTGCTCGGCATCAGCCATTGATATAGCTCTCATATCTGCACAGCTTCTCTCCCCGCTCCCTATGGTCTTTTGCTTTCTCGCGCTTGCAATCTTATTTGCATTTACTTCTGTTTTCATAAGCATATTCATTCATTCCAGCTGTCCAGAAATAGCTCAGGTGCTGCAGCAATGTGGTGTCTTCTTCGGAGTGACTGCGGTCTTCATATCTATTTCAGTCCCATTTCCTTCACAGTTAAACACAGAGACAAGTGATCAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.32

Weight (kDa)

5.66

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 112
AccBSI CCGCTC 1 cut(s) 196
AccII CGCG 1 cut(s) 221
AciI CCGC 2 cut(s) 194, 335
AclWI GGATC 1 cut(s) 28
AfiI CCNNNNNNNGG 1 cut(s) 112
AgsI TTSAA 1 cut(s) 92
AluBI AGCT 5 cut(s) 98, 167, 184, 279, 293
AluI AGCT 5 cut(s) 98, 167, 184, 279, 293
Alw26I GTCTC 1 cut(s) 377
AlwI GGATC 1 cut(s) 28
AlwNI CAGNNNCTG 1 cut(s) 301
AoxI GGCC 1 cut(s) 67
ApeKI GCWGC 2 cut(s) 301, 304
AspLEI GCGC 1 cut(s) 223
AspS9I GGNCC 1 cut(s) 68
BaeGI GKGCMC 1 cut(s) 60
BbsI GAAGAC 2 cut(s) 310, 331
BbvI GCAGC 2 cut(s) 288, 316
BclI TGATCA 1 cut(s) 391
BcoDI GTCTC 1 cut(s) 377
BfmI CTRYAG 1 cut(s) 302
BisI GCNGC 2 cut(s) 302, 305
BlpI GCTNAGC 1 cut(s) 99
BlsI GCNGC 2 cut(s) 303, 306
BmgT120I GGNCC 1 cut(s) 68
BmsI GCATC 1 cut(s) 158
BoxI GACNNNNGTC 1 cut(s) 335
BpiI GAAGAC 2 cut(s) 310, 331
BpmI CTGGAG 1 cut(s) 29
Bpu10I CCTNAGC 1 cut(s) 294
Bpu1102I GCTNAGC 1 cut(s) 99
Bsc4I CCNNNNNNNGG 1 cut(s) 112
Bse3DI GCAATG 2 cut(s) 60, 314
BseLI CCNNNNNNNGG 1 cut(s) 112
BseMI GCAATG 2 cut(s) 60, 314
BseMII CTCAG 1 cut(s) 308
BseSI GKGCMC 1 cut(s) 60
BseXI GCAGC 2 cut(s) 288, 316
BsgI GTGCAG 1 cut(s) 162
Bsh1236I CGCG 1 cut(s) 221
BshFI GGCC 1 cut(s) 69
BslFI GGGAC 1 cut(s) 341
BslI CCNNNNNNNGG 1 cut(s) 112
BsmAI GTCTC 1 cut(s) 377
BsmFI GGGAC 1 cut(s) 341
BsnI GGCC 1 cut(s) 69
Bsp1286I GDGCHC 1 cut(s) 60
Bsp143I GATC 2 cut(s) 33, 391
Bsp1720I GCTNAGC 1 cut(s) 99
BspACI CCGC 2 cut(s) 194, 335
BspANI GGCC 1 cut(s) 69
BspCNI CTCAG 1 cut(s) 307
BspFNI CGCG 1 cut(s) 221
BspMAI CTGCAG 1 cut(s) 306
BspPI GGATC 1 cut(s) 28
BsrBI CCGCTC 1 cut(s) 196
BsrDI GCAATG 2 cut(s) 60, 314
BssMI GATC 2 cut(s) 33, 391
Bst4CI ACNGT 1 cut(s) 372
BstC8I GCNNGC 2 cut(s) 67, 225
BstDEI CTNAG 2 cut(s) 99, 294
BstFNI CGCG 1 cut(s) 221
BstHHI GCGC 1 cut(s) 223
BstKTI GATC 2 cut(s) 36, 394
BstMAI GTCTC 1 cut(s) 377
BstMBI GATC 2 cut(s) 33, 391
BstPAI GACNNNNGTC 1 cut(s) 335
BstSFI CTRYAG 1 cut(s) 302
BstSLI GKGCMC 1 cut(s) 60
BstUI CGCG 1 cut(s) 221
BstV1I GCAGC 2 cut(s) 288, 316
BstV2I GAAGAC 2 cut(s) 310, 331
BstXI CCANNNNNNTGG 1 cut(s) 53
BsuRI GGCC 1 cut(s) 69
Cac8I GCNNGC 2 cut(s) 67, 225
CaiI CAGNNNCTG 1 cut(s) 301
CfoI GCGC 1 cut(s) 223
Cfr13I GGNCC 1 cut(s) 68
CviJI RGCY 7 cut(s) 69, 98, 155, 167, 184, 279, 293
CviKI_1 RGCY 7 cut(s) 69, 98, 155, 167, 184, 279, 293
DdeI CTNAG 2 cut(s) 99, 294
DpnI GATC 2 cut(s) 35, 393
DpnII GATC 2 cut(s) 33, 391
FaiI YATR 6 cut(s) 164, 173, 203, 257, 263, 344
FaqI GGGAC 1 cut(s) 341
FauI CCCGC 1 cut(s) 201
FbaI TGATCA 1 cut(s) 391
Fnu4HI GCNGC 2 cut(s) 302, 305
Fsp4HI GCNGC 2 cut(s) 302, 305
GlaI GCGC 1 cut(s) 222
GluI GCNGC 2 cut(s) 302, 305
GsuI CTGGAG 1 cut(s) 29
HaeIII GGCC 1 cut(s) 69
HhaI GCGC 1 cut(s) 223
Hin6I GCGC 1 cut(s) 221
HinP1I GCGC 1 cut(s) 221
HinfI GANTC 1 cut(s) 116
Hpy188I TCNGA 2 cut(s) 326, 396
Hpy188III TCNNGA 2 cut(s) 46, 284
HpyAV CCTTC 1 cut(s) 375
HpyCH4III ACNGT 1 cut(s) 372
HpyCH4V TGCA 6 cut(s) 11, 122, 179, 227, 239, 304
HpyF3I CTNAG 2 cut(s) 99, 294
HspAI GCGC 1 cut(s) 221
Ksp22I TGATCA 1 cut(s) 391
Kzo9I GATC 2 cut(s) 33, 391
LmnI GCTCC 1 cut(s) 201
LpnPI CCDG 6 cut(s) 51, 59, 84, 281, 289, 297
Lsp1109I GCAGC 2 cut(s) 288, 316
LweI GCATC 1 cut(s) 158
MaeIII GTNAC 1 cut(s) 328
MalI GATC 2 cut(s) 35, 393
MbiI CCGCTC 1 cut(s) 196
MboI GATC 2 cut(s) 33, 391
MboII GAAGA 4 cut(s) 61, 310, 313, 331
MfeI CAATTG 1 cut(s) 84
MhlI GDGCHC 1 cut(s) 60
MluCI AATT 2 cut(s) 84, 129
MseI TTAA 1 cut(s) 374
MspA1I CMGCKG 1 cut(s) 279
MunI CAATTG 1 cut(s) 84
MvnI CGCG 1 cut(s) 221
NdeII GATC 2 cut(s) 33, 391
NmeAIII GCCGAG 1 cut(s) 125
NmuCI GTSAC 1 cut(s) 328
PfeI GAWTC 1 cut(s) 116
PflMI CCANNNNNTGG 1 cut(s) 112
PkrI GCNGC 2 cut(s) 303, 306
PshAI GACNNNNGTC 1 cut(s) 335
PspPI GGNCC 1 cut(s) 68
PstI CTGCAG 1 cut(s) 306
PstNI CAGNNNCTG 1 cut(s) 301
PvuII CAGCTG 1 cut(s) 279
SaqAI TTAA 1 cut(s) 374
SatI GCNGC 2 cut(s) 302, 305
Sau3AI GATC 2 cut(s) 33, 391
Sau96I GGNCC 1 cut(s) 68
SduI GDGCHC 1 cut(s) 60
SetI ASST 6 cut(s) 100, 169, 186, 281, 295, 300
SfaNI GCATC 1 cut(s) 158
SfcI CTRYAG 1 cut(s) 302
Sse9I AATT 2 cut(s) 84, 129
SsiI CCGC 2 cut(s) 194, 335
TaaI ACNGT 1 cut(s) 372
TasI AATT 2 cut(s) 84, 129
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 1 cut(s) 374
Tru9I TTAA 1 cut(s) 374
TseFI GTSAC 1 cut(s) 328
TseI GCWGC 2 cut(s) 301, 304
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 5 cut(s) 17, 244, 256, 260, 331
Van91I CCANNNNNTGG 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.