MD12G1151900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0000512
Physical Location & Seq
Reverse (-)
23170549 .. 23170890
342 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1151900.v1.1.491

Sequence Viewer

Length: 294 bp
ATGGCTCTCGTACCCATCCAACTTCACTCCAAGCAGCTCCCTCTAACCTTTTGCTTTCTCGGTCTCGCAATCACACTCTTCTTCTCGAGTATCTTGGTTAGCAAGTTCATTCAGAACTCCAAATGCCCACGAATCATAGTTCATCTCTTCCATTATTTCGGTGTCTTCTTTGGGGTGATCGCCTTCTTCATTTCCATCACAATCTCATTTCCCCTCTGGTTCAAGTGTACTGCCTCTGTCATCTACGCGGCCTCAGGCCTTGTCATACTACTTTGTCACCACTACTATAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

11.04

Weight (kDa)

9.3

Isoelectric Point (pI)

47.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 248
AciI CCGC 1 cut(s) 248
AfaI GTAC 2 cut(s) 12, 229
AgsI TTSAA 1 cut(s) 223
AluBI AGCT 1 cut(s) 37
AluI AGCT 1 cut(s) 37
Alw26I GTCTC 1 cut(s) 68
Ama87I CYCGRG 1 cut(s) 85
AoxI GGCC 2 cut(s) 249, 256
ApeKI GCWGC 1 cut(s) 34
AsuHPI GGTGA 2 cut(s) 187, 269
AvaI CYCGRG 1 cut(s) 85
AxyI CCTNAGG 1 cut(s) 253
BbsI GAAGAC 1 cut(s) 157
BbvI GCAGC 1 cut(s) 46
BccI CCATC 2 cut(s) 23, 203
BcoDI GTCTC 1 cut(s) 68
BisI GCNGC 2 cut(s) 35, 249
BlsI GCNGC 2 cut(s) 36, 250
BmeT110I CYCGRG 1 cut(s) 85
BpiI GAAGAC 1 cut(s) 157
BsaI GGTCTC 1 cut(s) 68
Bse21I CCTNAGG 1 cut(s) 253
BseGI GGATG 1 cut(s) 15
BseMII CTCAG 1 cut(s) 267
BseXI GCAGC 1 cut(s) 46
Bsh1236I CGCG 1 cut(s) 248
BshFI GGCC 2 cut(s) 251, 258
BsiHKCI CYCGRG 1 cut(s) 85
BsmAI GTCTC 1 cut(s) 68
BsnI GGCC 2 cut(s) 251, 258
Bso31I GGTCTC 1 cut(s) 68
BsoBI CYCGRG 1 cut(s) 85
Bsp143I GATC 1 cut(s) 177
BspACI CCGC 1 cut(s) 248
BspANI GGCC 2 cut(s) 251, 258
BspCNI CTCAG 1 cut(s) 266
BspFNI CGCG 1 cut(s) 248
BspTNI GGTCTC 1 cut(s) 68
BssMI GATC 1 cut(s) 177
Bst6I CTCTTC 2 cut(s) 83, 152
BstDEI CTNAG 1 cut(s) 253
BstF5I GGATG 1 cut(s) 15
BstFNI CGCG 1 cut(s) 248
BstKTI GATC 1 cut(s) 180
BstMAI GTCTC 1 cut(s) 68
BstMBI GATC 1 cut(s) 177
BstUI CGCG 1 cut(s) 248
BstV1I GCAGC 1 cut(s) 46
BstV2I GAAGAC 1 cut(s) 157
Bsu36I CCTNAGG 1 cut(s) 253
BsuRI GGCC 2 cut(s) 251, 258
BtsCI GGATG 1 cut(s) 15
Csp6I GTAC 2 cut(s) 11, 228
CviJI RGCY 4 cut(s) 5, 37, 251, 258
CviKI_1 RGCY 4 cut(s) 5, 37, 251, 258
CviQI GTAC 2 cut(s) 11, 228
DdeI CTNAG 1 cut(s) 253
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
Eam1104I CTCTTC 2 cut(s) 83, 152
EarI CTCTTC 2 cut(s) 83, 152
Eco147I AGGCCT 1 cut(s) 258
Eco31I GGTCTC 1 cut(s) 68
Eco81I CCTNAGG 1 cut(s) 253
Eco88I CYCGRG 1 cut(s) 85
FaiI YATR 3 cut(s) 137, 266, 288
Fnu4HI GCNGC 2 cut(s) 35, 249
FokI GGATG 1 cut(s) 2
Fsp4HI GCNGC 2 cut(s) 35, 249
GluI GCNGC 2 cut(s) 35, 249
HaeIII GGCC 2 cut(s) 251, 258
HinfI GANTC 1 cut(s) 132
HphI GGTGA 2 cut(s) 187, 269
Hpy166II GTNNAC 1 cut(s) 228
Hpy188I TCNGA 1 cut(s) 114
Hpy188III TCNNGA 1 cut(s) 85
Hpy8I GTNNAC 1 cut(s) 228
HpyAV CCTTC 1 cut(s) 193
HpyF3I CTNAG 1 cut(s) 253
Kzo9I GATC 1 cut(s) 177
LmnI GCTCC 1 cut(s) 42
LpnPI CCDG 2 cut(s) 202, 240
Lsp1109I GCAGC 1 cut(s) 46
MaeIII GTNAC 1 cut(s) 275
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MboII GAAGA 5 cut(s) 70, 73, 139, 157, 178
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 4 cut(s) 51, 224, 244, 262
MvnI CGCG 1 cut(s) 248
NdeII GATC 1 cut(s) 177
NmuCI GTSAC 1 cut(s) 275
PaeR7I CTCGAG 1 cut(s) 85
PceI AGGCCT 1 cut(s) 258
PfeI GAWTC 1 cut(s) 132
PkrI GCNGC 2 cut(s) 36, 250
RsaI GTAC 2 cut(s) 12, 229
RsaNI GTAC 2 cut(s) 11, 228
SatI GCNGC 2 cut(s) 35, 249
Sau3AI GATC 1 cut(s) 177
SetI ASST 2 cut(s) 39, 50
Sfr274I CTCGAG 1 cut(s) 85
SlaI CTCGAG 1 cut(s) 85
SmlI CTYRAG 1 cut(s) 85
SmoI CTYRAG 1 cut(s) 85
SseBI AGGCCT 1 cut(s) 258
SsiI CCGC 1 cut(s) 248
StuI AGGCCT 1 cut(s) 258
TaqI TCGA 1 cut(s) 86
TaqII GACCGA 1 cut(s) 50
TatI WGTACW 1 cut(s) 227
TauI GCSGC 1 cut(s) 251
TfiI GAWTC 1 cut(s) 132
TseFI GTSAC 1 cut(s) 275
TseI GCWGC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 275
TspDTI ATGAA 3 cut(s) 97, 131, 178
XhoI CTCGAG 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.