Rmu_sc0004712.1_g000025

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004712.1
OG0000512
Physical Location & Seq
Reverse (-)
92857 .. 93333
477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004712.1_g000025.1.cds

Sequence Viewer

Length: 477 bp
atgaagtttactttaaagaaggcaaaggcatctgtcgtcggagtcattaaaaaacttggttgggttcctgatcttcctgaccaagaaatggctcaaccagcagcagcgcctagacaacccaaccacctgctagattattgggcaaaggtacttgttgtattctgcttggcatccgctattgacatggctctcctctccgcccaaatccactctcagctccctgcaatcttttgcttcctcggattaaccatcatacttgcctttacttgcttctttgtagacaaatgtattcgctccaacttcgaacaagcagctctggtgctccagcgatttggccttttctttggagtcactgcagtcttcatctccatcaccattccatttcctctgtggttcaaatgtgtcacatgcttcatctatgtgctctgctggcttacaatcttgatttgtaattgctttcattattatttggtataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.86

Weight (kDa)

8.76

Isoelectric Point (pI)

34.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 135
Acc36I ACCTGC 1 cut(s) 135
AccB7I CCANNNNNTGG 1 cut(s) 88
AccI GTMKAC 1 cut(s) 279
AciI CCGC 2 cut(s) 174, 198
AfaI GTAC 1 cut(s) 150
AfiI CCNNNNNNNGG 1 cut(s) 88
AgsI TTSAA 1 cut(s) 397
AluBI AGCT 2 cut(s) 217, 314
AluI AGCT 2 cut(s) 217, 314
Alw21I GWGCWC 2 cut(s) 324, 426
AoxI GGCC 1 cut(s) 334
ApeKI GCWGC 3 cut(s) 101, 104, 311
AspLEI GCGC 1 cut(s) 109
AsuHPI GGTGA 1 cut(s) 364
AsuII TTCGAA 1 cut(s) 303
BbsI GAAGAC 1 cut(s) 352
Bbv12I GWGCWC 2 cut(s) 324, 426
BbvI GCAGC 3 cut(s) 113, 116, 323
BccI CCATC 2 cut(s) 257, 377
BfaI CTAG 2 cut(s) 111, 131
BfmI CTRYAG 1 cut(s) 354
BfoI RGCGCY 1 cut(s) 110
BfuAI ACCTGC 1 cut(s) 135
BisI GCNGC 3 cut(s) 102, 105, 312
BlsI GCNGC 3 cut(s) 103, 106, 313
BmiI GGNNCC 1 cut(s) 66
BmsI GCATC 2 cut(s) 38, 179
BpiI GAAGAC 1 cut(s) 352
BpmI CTGGAG 1 cut(s) 308
Bpu14I TTCGAA 1 cut(s) 303
BsaJI CCNNGG 1 cut(s) 238
Bsc4I CCNNNNNNNGG 1 cut(s) 88
BseDI CCNNGG 1 cut(s) 238
BseGI GGATG 1 cut(s) 170
BseLI CCNNNNNNNGG 1 cut(s) 88
BseMII CTCAG 1 cut(s) 227
BseRI GAGGAG 1 cut(s) 182
BseXI GCAGC 3 cut(s) 113, 116, 323
BshFI GGCC 1 cut(s) 336
BsiHKAI GWGCWC 2 cut(s) 324, 426
BslI CCNNNNNNNGG 1 cut(s) 88
BsnI GGCC 1 cut(s) 336
Bsp119I TTCGAA 1 cut(s) 303
Bsp1286I GDGCHC 2 cut(s) 324, 426
Bsp143I GATC 1 cut(s) 70
BspACI CCGC 2 cut(s) 174, 198
BspANI GGCC 1 cut(s) 336
BspCNI CTCAG 1 cut(s) 226
BspLI GGNNCC 1 cut(s) 66
BspMAI CTGCAG 1 cut(s) 358
BspMI ACCTGC 1 cut(s) 135
BspT104I TTCGAA 1 cut(s) 303
BssECI CCNNGG 1 cut(s) 238
BssMI GATC 1 cut(s) 70
BstBI TTCGAA 1 cut(s) 303
BstC8I GCNNGC 1 cut(s) 431
BstDEI CTNAG 1 cut(s) 213
BstF5I GGATG 1 cut(s) 170
BstH2I RGCGCY 1 cut(s) 110
BstHHI GCGC 1 cut(s) 109
BstKTI GATC 1 cut(s) 73
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 2 cut(s) 98, 430
BstNSI RCATGY 1 cut(s) 411
BstSFI CTRYAG 1 cut(s) 354
BstV1I GCAGC 3 cut(s) 113, 116, 323
BstV2I GAAGAC 1 cut(s) 352
BstXI CCANNNNNNTGG 1 cut(s) 332
BsuRI GGCC 1 cut(s) 336
BtsCI GGATG 1 cut(s) 170
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 1 cut(s) 351
BveI ACCTGC 1 cut(s) 135
Cac8I GCNNGC 1 cut(s) 431
CfoI GCGC 1 cut(s) 109
Csp6I GTAC 1 cut(s) 149
CviAII CATG 2 cut(s) 184, 408
CviJI RGCY 6 cut(s) 92, 188, 217, 314, 336, 433
CviKI_1 RGCY 6 cut(s) 92, 188, 217, 314, 336, 433
CviQI GTAC 1 cut(s) 149
DdeI CTNAG 1 cut(s) 213
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
DraI TTTAAA 1 cut(s) 15
EciI GGCGGA 1 cut(s) 187
FaeI CATG 2 cut(s) 187, 411
FaiI YATR 5 cut(s) 185, 254, 409, 420, 475
FatI CATG 2 cut(s) 183, 407
FblI GTMKAC 1 cut(s) 279
Fnu4HI GCNGC 3 cut(s) 102, 105, 312
FokI GGATG 1 cut(s) 157
Fsp4HI GCNGC 3 cut(s) 102, 105, 312
FspBI CTAG 2 cut(s) 111, 131
GlaI GCGC 1 cut(s) 108
GluI GCNGC 3 cut(s) 102, 105, 312
GsuI CTGGAG 1 cut(s) 308
HaeII RGCGCY 1 cut(s) 110
HaeIII GGCC 1 cut(s) 336
HhaI GCGC 1 cut(s) 109
Hin1II CATG 2 cut(s) 187, 411
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HinfI GANTC 2 cut(s) 42, 348
HphI GGTGA 1 cut(s) 364
Hpy166II GTNNAC 2 cut(s) 9, 280
Hpy188I TCNGA 2 cut(s) 41, 242
Hpy188III TCNNGA 3 cut(s) 68, 77, 442
Hpy8I GTNNAC 2 cut(s) 9, 280
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 1 cut(s) 13
HpyCH4V TGCA 2 cut(s) 224, 356
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 430
HpyF3I CTNAG 1 cut(s) 213
Hsp92II CATG 2 cut(s) 187, 411
HspAI GCGC 1 cut(s) 107
Kzo9I GATC 1 cut(s) 70
LmnI GCTCC 3 cut(s) 222, 299, 327
LpnPI CCDG 8 cut(s) 81, 90, 111, 140, 234, 302, 338, 415
Lsp1109I GCAGC 3 cut(s) 113, 116, 323
LweI GCATC 2 cut(s) 38, 179
MaeI CTAG 2 cut(s) 111, 131
MaeIII GTNAC 2 cut(s) 349, 403
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 2 cut(s) 65, 352
MhlI GDGCHC 2 cut(s) 324, 426
MluCI AATT 1 cut(s) 451
MlyI GAGTC 2 cut(s) 51, 357
MmeI TCCRAC 2 cut(s) 19, 321
MnlI CCTC 3 cut(s) 203, 248, 396
MseI TTAA 3 cut(s) 14, 48, 245
MslI CAYNNNNRTG 1 cut(s) 419
MwoI GCNNNNNNNGC 2 cut(s) 98, 430
NdeII GATC 1 cut(s) 70
NlaIII CATG 2 cut(s) 187, 411
NlaIV GGNNCC 1 cut(s) 66
NmuCI GTSAC 2 cut(s) 349, 403
NspI RCATGY 1 cut(s) 411
NspV TTCGAA 1 cut(s) 303
PaqCI CACCTGC 1 cut(s) 135
PflMI CCANNNNNTGG 1 cut(s) 88
PkrI GCNGC 3 cut(s) 103, 106, 313
PleI GAGTC 2 cut(s) 50, 356
PpsI GAGTC 2 cut(s) 50, 356
PspN4I GGNNCC 1 cut(s) 66
PstI CTGCAG 1 cut(s) 358
RsaI GTAC 1 cut(s) 150
RsaNI GTAC 1 cut(s) 149
RseI CAYNNNNRTG 1 cut(s) 419
SaqAI TTAA 3 cut(s) 14, 48, 245
SatI GCNGC 3 cut(s) 102, 105, 312
Sau3AI GATC 1 cut(s) 70
SchI GAGTC 2 cut(s) 51, 357
SduI GDGCHC 2 cut(s) 324, 426
SetI ASST 4 cut(s) 129, 150, 219, 316
SfaNI GCATC 2 cut(s) 38, 179
SfcI CTRYAG 1 cut(s) 354
SfuI TTCGAA 1 cut(s) 303
SmiMI CAYNNNNRTG 1 cut(s) 419
Sse9I AATT 1 cut(s) 451
SsiI CCGC 2 cut(s) 174, 198
SspMI CTAG 2 cut(s) 111, 131
TaqI TCGA 1 cut(s) 303
TasI AATT 1 cut(s) 451
Tru1I TTAA 3 cut(s) 14, 48, 245
Tru9I TTAA 3 cut(s) 14, 48, 245
TscAI CASTG 1 cut(s) 358
TseFI GTSAC 2 cut(s) 349, 403
TseI GCWGC 3 cut(s) 101, 104, 311
Tsp45I GTSAC 2 cut(s) 349, 403
TspDTI ATGAA 4 cut(s) 17, 352, 403, 449
TspRI CASTG 1 cut(s) 358
Van91I CCANNNNNTGG 1 cut(s) 88
XceI RCATGY 1 cut(s) 411
XcmI CCANNNNNNNNNTGG 1 cut(s) 387
XmiI GTMKAC 1 cut(s) 279
XspI CTAG 2 cut(s) 111, 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.