Prupe.6G011200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000512
Physical Location & Seq
Reverse (-)
824672 .. 826429
1758 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G011200.1

Sequence Viewer

Length: 774 bp
ATGAATACAGAGAGTCTAGTTGGAAATCTGGTGAGAAAATCTTATGAAATGGAAGGTAGCCTTACTTTCAAACTTGGAGAAGAGGAGTTGGAGCGTGGGATGAGATCTCCCATAATTCTTCGTCCAAAACAAAATCGAGGAACTAACGAGCCCCAAAAAAAAAGGAAACAGAGTGCAAAAAATTGGAAAAAAAGAAGAAAAGATCTGCAAAAATGGGGAAACAAAATCAGCAGAGATCCTAAGAAAAAGAGATCCATAGTTTTCTGGCTGAAAAAGAAAATAATACTCATTATTAGCCGCAGTTTTGATCATCACCATGATGATGTTTTTGATGACCCAGAAAGTACTTCAGCTGCCCCCGAAGCCGAACCACAACCATCTGTACCAGCACCAGCACCAGCAGCTAGGCCTAAGCCAACTAAGTACCAAAACTTAGATTGGGAAAAGATTATTGTGGTGTATTGCTTGTCAACAGCCGTTGCCATGGCTCTCACACCCGTCCAAGTTCACTCCAACCAGCTCCCTTTAACCTTTCGATTTCTCGGACTCACCGTCCTGTTTTCCTTTGCTTGCATCATGGTAAGCAAATTTATTCACAACAACAACTGTCCAAGAATAACAGTCGATCTCTTCCATTCTTTTGGGGTCTTTTTTGGAATCACGGCCTTCCTCATTTGCATTGCAATCCCATTCCCTCTCTGGTTCAAATGTACTGCCTCTGTCATCTATGTGGTCTCAGGCCTTGTAATCATGTTTTGTAACTACTTTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

258

Amino Acids

29.43

Weight (kDa)

9.74

Isoelectric Point (pI)

51.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 298
AclWI GGATC 2 cut(s) 230, 246
AcsI RAATTY 1 cut(s) 587
AcuI CTGAAG 1 cut(s) 333
AfaI GTAC 4 cut(s) 346, 384, 425, 712
AgsI TTSAA 2 cut(s) 70, 706
AhdI GACNNNNNGTC 1 cut(s) 551
AluBI AGCT 3 cut(s) 353, 404, 520
AluI AGCT 3 cut(s) 353, 404, 520
Alw26I GTCTC 1 cut(s) 739
AlwI GGATC 2 cut(s) 230, 246
AoxI GGCC 3 cut(s) 407, 663, 739
ApeKI GCWGC 2 cut(s) 353, 401
ApoI RAATTY 1 cut(s) 587
AsuHPI GGTGA 3 cut(s) 43, 305, 541
BanII GRGCYC 1 cut(s) 153
BbvI GCAGC 2 cut(s) 340, 413
BccI CCATC 1 cut(s) 385
BceAI ACGGC 2 cut(s) 461, 678
BclI TGATCA 1 cut(s) 307
BcoDI GTCTC 1 cut(s) 739
BfaI CTAG 2 cut(s) 17, 405
BglII AGATCT 2 cut(s) 104, 202
BisI GCNGC 3 cut(s) 298, 354, 402
BlsI GCNGC 3 cut(s) 299, 355, 403
BmcAI AGTACT 1 cut(s) 346
BmeRI GACNNNNNGTC 1 cut(s) 551
BmsI GCATC 1 cut(s) 582
Bpu10I CCTNAGC 1 cut(s) 411
BsaI GGTCTC 1 cut(s) 739
BsaJI CCNNGG 1 cut(s) 483
Bse3DI GCAATG 1 cut(s) 678
BseDI CCNNGG 1 cut(s) 483
BseGI GGATG 1 cut(s) 105
BseMI GCAATG 1 cut(s) 678
BseMII CTCAG 1 cut(s) 750
BseRI GAGGAG 1 cut(s) 98
BseXI GCAGC 2 cut(s) 340, 413
BshFI GGCC 3 cut(s) 409, 665, 741
BsmAI GTCTC 1 cut(s) 739
BsnI GGCC 3 cut(s) 409, 665, 741
Bso31I GGTCTC 1 cut(s) 739
Bsp1286I GDGCHC 1 cut(s) 153
Bsp143I GATC 6 cut(s) 104, 202, 235, 251, 307, 625
Bsp19I CCATGG 1 cut(s) 483
BspACI CCGC 1 cut(s) 298
BspANI GGCC 3 cut(s) 409, 665, 741
BspCNI CTCAG 1 cut(s) 749
BspPI GGATC 2 cut(s) 230, 246
BspTNI GGTCTC 1 cut(s) 739
BsrDI GCAATG 1 cut(s) 678
BssECI CCNNGG 1 cut(s) 483
BssMI GATC 6 cut(s) 104, 202, 235, 251, 307, 625
BssT1I CCWWGG 1 cut(s) 483
Bst4CI ACNGT 3 cut(s) 553, 608, 622
Bst6I CTCTTC 2 cut(s) 75, 635
BstC8I GCNNGC 1 cut(s) 571
BstDEI CTNAG 5 cut(s) 240, 411, 420, 433, 736
BstDSI CCRYGG 1 cut(s) 483
BstF5I GGATG 1 cut(s) 105
BstKTI GATC 6 cut(s) 107, 205, 238, 254, 310, 628
BstMAI GTCTC 1 cut(s) 739
BstMBI GATC 6 cut(s) 104, 202, 235, 251, 307, 625
BstMWI GCNNNNNNNGC 2 cut(s) 362, 401
BstV1I GCAGC 2 cut(s) 340, 413
BstX2I RGATCY 4 cut(s) 104, 202, 235, 251
BstXI CCANNNNNNTGG 1 cut(s) 641
BstYI RGATCY 4 cut(s) 104, 202, 235, 251
BsuRI GGCC 3 cut(s) 409, 665, 741
BtgI CCRYGG 1 cut(s) 483
BtsCI GGATG 1 cut(s) 105
Cac8I GCNNGC 1 cut(s) 571
Csp6I GTAC 4 cut(s) 345, 383, 424, 711
CviAII CATG 4 cut(s) 317, 484, 577, 751
CviQI GTAC 4 cut(s) 345, 383, 424, 711
DdeI CTNAG 5 cut(s) 240, 411, 420, 433, 736
DpnI GATC 6 cut(s) 106, 204, 237, 253, 309, 627
DpnII GATC 6 cut(s) 104, 202, 235, 251, 307, 625
DriI GACNNNNNGTC 1 cut(s) 551
Eam1104I CTCTTC 2 cut(s) 75, 635
Eam1105I GACNNNNNGTC 1 cut(s) 551
EarI CTCTTC 2 cut(s) 75, 635
Eco130I CCWWGG 1 cut(s) 483
Eco147I AGGCCT 2 cut(s) 409, 741
Eco24I GRGCYC 1 cut(s) 153
Eco31I GGTCTC 1 cut(s) 739
Eco57I CTGAAG 1 cut(s) 333
EcoT14I CCWWGG 1 cut(s) 483
EcoT38I GRGCYC 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 483
FaeI CATG 4 cut(s) 320, 487, 580, 754
FaiI YATR 9 cut(s) 45, 113, 257, 318, 485, 578, 729, 752, 772
FalI AAGNNNNNCTT 2 cut(s) 45, 77
FatI CATG 4 cut(s) 316, 483, 576, 750
FbaI TGATCA 1 cut(s) 307
Fnu4HI GCNGC 3 cut(s) 298, 354, 402
FokI GGATG 1 cut(s) 112
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 3 cut(s) 298, 354, 402
FspBI CTAG 2 cut(s) 17, 405
GluI GCNGC 3 cut(s) 298, 354, 402
HaeIII GGCC 3 cut(s) 409, 665, 741
Hin1II CATG 4 cut(s) 320, 487, 580, 754
HincII GTYRAC 1 cut(s) 471
HindII GTYRAC 1 cut(s) 471
HinfI GANTC 3 cut(s) 13, 546, 657
HphI GGTGA 3 cut(s) 43, 305, 541
Hpy166II GTNNAC 2 cut(s) 471, 508
Hpy188I TCNGA 1 cut(s) 545
Hpy8I GTNNAC 2 cut(s) 471, 508
HpyAV CCTTC 2 cut(s) 47, 676
HpyCH4III ACNGT 3 cut(s) 553, 608, 622
HpyCH4V TGCA 5 cut(s) 176, 208, 573, 678, 683
HpyF10VI GCNNNNNNNGC 2 cut(s) 362, 401
HpyF3I CTNAG 5 cut(s) 240, 411, 420, 433, 736
Hsp92II CATG 4 cut(s) 320, 487, 580, 754
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 6 cut(s) 104, 202, 235, 251, 307, 625
LmnI GCTCC 2 cut(s) 91, 525
Lsp1109I GCAGC 2 cut(s) 340, 413
LweI GCATC 1 cut(s) 582
MaeI CTAG 2 cut(s) 17, 405
MaeIII GTNAC 1 cut(s) 758
MalI GATC 6 cut(s) 106, 204, 237, 253, 309, 627
MboI GATC 6 cut(s) 104, 202, 235, 251, 307, 625
MboII GAAGA 4 cut(s) 92, 110, 207, 622
MflI RGATCY 4 cut(s) 104, 202, 235, 251
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 3 cut(s) 114, 181, 587
MlyI GAGTC 2 cut(s) 22, 540
MmeI TCCRAC 2 cut(s) 69, 537
MnlI CCTC 5 cut(s) 76, 131, 680, 705, 727
MseI TTAA 1 cut(s) 527
MslI CAYNNNNRTG 4 cut(s) 315, 318, 321, 728
MspA1I CMGCKG 1 cut(s) 353
MwoI GCNNNNNNNGC 2 cut(s) 362, 401
NcoI CCATGG 1 cut(s) 483
NdeII GATC 6 cut(s) 104, 202, 235, 251, 307, 625
NlaIII CATG 4 cut(s) 320, 487, 580, 754
PceI AGGCCT 2 cut(s) 409, 741
PcsI WCGNNNNNNNCGW 1 cut(s) 549
PfeI GAWTC 1 cut(s) 657
PkrI GCNGC 3 cut(s) 299, 355, 403
PleI GAGTC 2 cut(s) 21, 540
PpsI GAGTC 2 cut(s) 21, 540
PsuI RGATCY 4 cut(s) 104, 202, 235, 251
PvuII CAGCTG 1 cut(s) 353
RsaI GTAC 4 cut(s) 346, 384, 425, 712
RsaNI GTAC 4 cut(s) 345, 383, 424, 711
RseI CAYNNNNRTG 4 cut(s) 315, 318, 321, 728
SaqAI TTAA 1 cut(s) 527
SatI GCNGC 3 cut(s) 298, 354, 402
Sau3AI GATC 6 cut(s) 104, 202, 235, 251, 307, 625
ScaI AGTACT 1 cut(s) 346
SchI GAGTC 2 cut(s) 22, 540
SduI GDGCHC 1 cut(s) 153
SetI ASST 5 cut(s) 58, 355, 406, 522, 533
SfaNI GCATC 1 cut(s) 582
SmiMI CAYNNNNRTG 4 cut(s) 315, 318, 321, 728
Sse9I AATT 3 cut(s) 114, 181, 587
SseBI AGGCCT 2 cut(s) 409, 741
SsiI CCGC 1 cut(s) 298
SspMI CTAG 2 cut(s) 17, 405
StuI AGGCCT 2 cut(s) 409, 741
StyI CCWWGG 1 cut(s) 483
TaaI ACNGT 3 cut(s) 553, 608, 622
TaqI TCGA 3 cut(s) 136, 535, 624
TasI AATT 3 cut(s) 114, 181, 587
TatI WGTACW 2 cut(s) 344, 710
TauI GCSGC 1 cut(s) 300
TfiI GAWTC 1 cut(s) 657
Tru1I TTAA 1 cut(s) 527
Tru9I TTAA 1 cut(s) 527
TseI GCWGC 2 cut(s) 353, 401
TspDTI ATGAA 2 cut(s) 17, 60
XapI RAATTY 1 cut(s) 587
XcmI CCANNNNNNNNNTGG 1 cut(s) 696
XspI CTAG 2 cut(s) 17, 405
ZrmI AGTACT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.