Rmu_sc0007533.1_g000008

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007533.1
OG0000512
Physical Location & Seq
Forward (+)
18130 .. 18546
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007533.1_g000008.1.cds

Sequence Viewer

Length: 417 bp
atgatcccactactccagaagattgggcacattgctggtcctgaccaagaagcaattgttgaagtagctcagcaccacaacttagattctgcaaagataattgtggtattttgctccgcatcagccattgacatagctctcatatctgcccagcttctctccccgctccctatggttttttactttctcgcgcttgcaatcttatttgcatttacttctgttttcataagcatattcattcattccagctgtccagaaatagctcaggtgctccagcaatgtggtgtcttcttcggagtgactgcggtcttcatatctatttcagtcccatttcctgtctggttcaaatgtactacctgcttcatctatgcactgtcctggcttgtaataatattttgtaactacttctacgcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.26

Weight (kDa)

5.63

Isoelectric Point (pI)

48.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 365
AccBSI CCGCTC 1 cut(s) 166
AccII CGCG 1 cut(s) 191
AciI CCGC 3 cut(s) 117, 164, 305
AfaI GTAC 1 cut(s) 352
AgsI TTSAA 2 cut(s) 62, 346
AjnI CCWGG 1 cut(s) 377
AluBI AGCT 5 cut(s) 68, 137, 154, 249, 263
AluI AGCT 5 cut(s) 68, 137, 154, 249, 263
Alw21I GWGCWC 1 cut(s) 273
AspLEI GCGC 1 cut(s) 193
AspS9I GGNCC 1 cut(s) 38
AvaII GGWCC 1 cut(s) 38
BaeGI GKGCMC 1 cut(s) 30
BbsI GAAGAC 2 cut(s) 280, 301
Bbv12I GWGCWC 1 cut(s) 273
BciT130I CCWGG 1 cut(s) 379
BfuAI ACCTGC 1 cut(s) 365
BlpI GCTNAGC 1 cut(s) 69
Bme1390I CCNGG 1 cut(s) 379
Bme18I GGWCC 1 cut(s) 38
BmgT120I GGNCC 1 cut(s) 38
BmrFI CCNGG 1 cut(s) 379
BmsI GCATC 1 cut(s) 128
BoxI GACNNNNGTC 1 cut(s) 305
BpiI GAAGAC 2 cut(s) 280, 301
BpmI CTGGAG 1 cut(s) 257
Bpu10I CCTNAGC 1 cut(s) 264
Bpu1102I GCTNAGC 1 cut(s) 69
Bse3DI GCAATG 2 cut(s) 30, 284
BseBI CCWGG 1 cut(s) 379
BseMI GCAATG 2 cut(s) 30, 284
BseMII CTCAG 2 cut(s) 83, 278
BseSI GKGCMC 1 cut(s) 30
BseYI CCCAGC 1 cut(s) 150
Bsh1236I CGCG 1 cut(s) 191
BsiHKAI GWGCWC 1 cut(s) 273
BslFI GGGAC 1 cut(s) 311
BsmFI GGGAC 1 cut(s) 311
Bsp1286I GDGCHC 2 cut(s) 30, 273
Bsp143I GATC 1 cut(s) 3
Bsp1720I GCTNAGC 1 cut(s) 69
BspACI CCGC 3 cut(s) 117, 164, 305
BspCNI CTCAG 2 cut(s) 82, 277
BspFNI CGCG 1 cut(s) 191
BspMI ACCTGC 1 cut(s) 365
BsrBI CCGCTC 1 cut(s) 166
BsrDI GCAATG 2 cut(s) 30, 284
BssMI GATC 1 cut(s) 3
Bst2UI CCWGG 1 cut(s) 379
Bst4CI ACNGT 1 cut(s) 375
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 3 cut(s) 69, 82, 264
BstFNI CGCG 1 cut(s) 191
BstHHI GCGC 1 cut(s) 193
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstNI CCWGG 1 cut(s) 379
BstPAI GACNNNNGTC 1 cut(s) 305
BstSCI CCNGG 1 cut(s) 377
BstSLI GKGCMC 1 cut(s) 30
BstUI CGCG 1 cut(s) 191
BstV2I GAAGAC 2 cut(s) 280, 301
BstXI CCANNNNNNTGG 2 cut(s) 23, 281
BtsIMutI CAGTG 1 cut(s) 371
BveI ACCTGC 1 cut(s) 365
Cac8I GCNNGC 1 cut(s) 195
CfoI GCGC 1 cut(s) 193
Cfr13I GGNCC 1 cut(s) 38
Csp6I GTAC 1 cut(s) 351
CviJI RGCY 7 cut(s) 68, 125, 137, 154, 249, 263, 382
CviKI_1 RGCY 7 cut(s) 68, 125, 137, 154, 249, 263, 382
CviQI GTAC 1 cut(s) 351
DdeI CTNAG 3 cut(s) 69, 82, 264
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eco47I GGWCC 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 377
FaiI YATR 7 cut(s) 134, 143, 173, 227, 233, 314, 369
FaqI GGGAC 1 cut(s) 311
FauI CCCGC 1 cut(s) 171
GlaI GCGC 1 cut(s) 192
GsaI CCCAGC 1 cut(s) 154
GsuI CTGGAG 1 cut(s) 257
HhaI GCGC 1 cut(s) 193
Hin6I GCGC 1 cut(s) 191
HinP1I GCGC 1 cut(s) 191
HinfI GANTC 1 cut(s) 86
Hpy188I TCNGA 1 cut(s) 296
Hpy188III TCNNGA 3 cut(s) 16, 41, 254
HpyCH4III ACNGT 1 cut(s) 375
HpyCH4V TGCA 4 cut(s) 92, 197, 209, 371
HpyF3I CTNAG 3 cut(s) 69, 82, 264
HspAI GCGC 1 cut(s) 191
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 3 cut(s) 119, 171, 276
LweI GCATC 1 cut(s) 128
MaeIII GTNAC 2 cut(s) 298, 398
MalI GATC 1 cut(s) 5
MbiI CCGCTC 1 cut(s) 166
MboI GATC 1 cut(s) 3
MboII GAAGA 4 cut(s) 31, 280, 283, 301
MfeI CAATTG 1 cut(s) 54
MhlI GDGCHC 2 cut(s) 30, 273
MluCI AATT 2 cut(s) 54, 99
MseI TTAA 1 cut(s) 415
MspA1I CMGCKG 1 cut(s) 249
MspR9I CCNGG 1 cut(s) 379
MunI CAATTG 1 cut(s) 54
MvaI CCWGG 1 cut(s) 379
MvnI CGCG 1 cut(s) 191
NdeII GATC 1 cut(s) 3
NmuCI GTSAC 1 cut(s) 298
PfeI GAWTC 1 cut(s) 86
PshAI GACNNNNGTC 1 cut(s) 305
Psp6I CCWGG 1 cut(s) 377
PspFI CCCAGC 1 cut(s) 150
PspGI CCWGG 1 cut(s) 377
PspPI GGNCC 1 cut(s) 38
PvuII CAGCTG 1 cut(s) 249
RsaI GTAC 1 cut(s) 352
RsaNI GTAC 1 cut(s) 351
SaqAI TTAA 1 cut(s) 415
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 1 cut(s) 38
ScrFI CCNGG 1 cut(s) 379
SduI GDGCHC 2 cut(s) 30, 273
SetI ASST 7 cut(s) 70, 139, 156, 251, 265, 270, 359
SfaNI GCATC 1 cut(s) 128
SinI GGWCC 1 cut(s) 38
Sse9I AATT 2 cut(s) 54, 99
SsiI CCGC 3 cut(s) 117, 164, 305
SspI AATATT 1 cut(s) 393
StyD4I CCNGG 1 cut(s) 377
TaaI ACNGT 1 cut(s) 375
TasI AATT 2 cut(s) 54, 99
TatI WGTACW 1 cut(s) 350
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 1 cut(s) 415
Tru9I TTAA 1 cut(s) 415
TscAI CASTG 1 cut(s) 378
TseFI GTSAC 1 cut(s) 298
Tsp45I GTSAC 1 cut(s) 298
TspDTI ATGAA 5 cut(s) 214, 226, 230, 301, 352
TspRI CASTG 1 cut(s) 378
VpaK11BI GGWCC 1 cut(s) 38
XcmI CCANNNNNNNNNTGG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.