Rmu_sc0010483.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010483.1
OG0000512
Physical Location & Seq
Reverse (-)
3801 .. 4241
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010483.1_g000002.1.cds

Sequence Viewer

Length: 441 bp
atgacggcattattccagaaaatcatcaggtgcctctttaatggtcctcctcctggtggtgaccaagatacagaagctcaactaccagacacagcagatgctcctaggtaccgcaacttggattgggcaaagatatttgttgtcttctgcttggcatcagccattgctatagctctgctatcagctcaagtctactctcagctccctctaaccttctacttcctctcattcaccctcattttctcctttacctctttcttcattgccaaattcattcacttgacccgtccccaatcggctcaagtactagaccgatttggcattttctttggcgtcacagcatttttcatttccattacaattccgtttcctttgtggttcaagtgcattacctgcttcatctatctcgtctcctggcttgcaattctagtttataaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.65

Weight (kDa)

8.76

Isoelectric Point (pI)

27.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 435
Acc36I ACCTGC 1 cut(s) 401
Acc65I GGTACC 1 cut(s) 108
AccB1I GGYRCC 2 cut(s) 30, 108
AccI GTMKAC 1 cut(s) 192
AciI CCGC 1 cut(s) 112
AcsI RAATTY 1 cut(s) 269
AcyI GRCGYC 1 cut(s) 333
AfaI GTAC 2 cut(s) 110, 306
AfiI CCNNNNNNNGG 3 cut(s) 53, 56, 118
AgsI TTSAA 1 cut(s) 382
AjnI CCWGG 2 cut(s) 52, 413
AluBI AGCT 4 cut(s) 77, 173, 185, 202
AluI AGCT 4 cut(s) 77, 173, 185, 202
Alw26I GTCTC 1 cut(s) 415
ApoI RAATTY 1 cut(s) 269
Asp718I GGTACC 1 cut(s) 108
AspA2I CCTAGG 1 cut(s) 104
AspS9I GGNCC 1 cut(s) 44
AsuHPI GGTGA 2 cut(s) 71, 223
AvaII GGWCC 1 cut(s) 44
AvrII CCTAGG 1 cut(s) 104
BanI GGYRCC 2 cut(s) 30, 108
BarI GAAGNNNNNNTAC 2 cut(s) 66, 98
BbsI GAAGAC 1 cut(s) 136
BceAI ACGGC 1 cut(s) 21
BciT130I CCWGG 2 cut(s) 54, 415
BcoDI GTCTC 1 cut(s) 415
BfaI CTAG 3 cut(s) 105, 308, 428
BfmI CTRYAG 1 cut(s) 168
BfuAI ACCTGC 1 cut(s) 401
BlnI CCTAGG 1 cut(s) 104
BmcAI AGTACT 1 cut(s) 306
Bme1390I CCNGG 2 cut(s) 54, 415
Bme18I GGWCC 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 2 cut(s) 32, 110
BmrFI CCNGG 2 cut(s) 54, 415
BmsI GCATC 2 cut(s) 88, 164
BpiI GAAGAC 1 cut(s) 136
BpuEI CTTGAG 2 cut(s) 171, 285
BsaHI GRCGYC 1 cut(s) 333
BsaJI CCNNGG 1 cut(s) 104
Bsc4I CCNNNNNNNGG 3 cut(s) 53, 56, 118
Bse3DI GCAATG 2 cut(s) 162, 261
BseBI CCWGG 2 cut(s) 54, 415
BseDI CCNNGG 1 cut(s) 104
BseLI CCNNNNNNNGG 3 cut(s) 53, 56, 118
BseMI GCAATG 2 cut(s) 162, 261
BseMII CTCAG 1 cut(s) 212
BseRI GAGGAG 1 cut(s) 39
BshNI GGYRCC 2 cut(s) 30, 108
BslFI GGGAC 1 cut(s) 273
BslI CCNNNNNNNGG 3 cut(s) 53, 56, 118
BsmAI GTCTC 1 cut(s) 415
BsmBI CGTCTC 1 cut(s) 415
BsmFI GGGAC 1 cut(s) 273
BspACI CCGC 1 cut(s) 112
BspCNI CTCAG 1 cut(s) 211
BspLI GGNNCC 2 cut(s) 32, 110
BspMI ACCTGC 1 cut(s) 401
BspT107I GGYRCC 2 cut(s) 30, 108
BsrDI GCAATG 2 cut(s) 162, 261
BssECI CCNNGG 1 cut(s) 104
BssNI GRCGYC 1 cut(s) 333
BssT1I CCWWGG 1 cut(s) 104
Bst2UI CCWGG 2 cut(s) 54, 415
BstACI GRCGYC 1 cut(s) 333
BstAPI GCANNNNNTGC 1 cut(s) 393
BstC8I GCNNGC 1 cut(s) 420
BstDEI CTNAG 1 cut(s) 198
BstEII GGTNACC 1 cut(s) 59
BstMAI GTCTC 1 cut(s) 415
BstMWI GCNNNNNNNGC 1 cut(s) 393
BstNI CCWGG 2 cut(s) 54, 415
BstPI GGTNACC 1 cut(s) 59
BstSCI CCNGG 2 cut(s) 52, 413
BstSFI CTRYAG 1 cut(s) 168
BstV2I GAAGAC 1 cut(s) 136
BveI ACCTGC 1 cut(s) 401
Cac8I GCNNGC 1 cut(s) 420
Cfr13I GGNCC 1 cut(s) 44
CseI GACGC 1 cut(s) 322
Csp6I GTAC 2 cut(s) 109, 305
CviJI RGCY 7 cut(s) 77, 161, 173, 185, 202, 299, 418
CviKI_1 RGCY 7 cut(s) 77, 161, 173, 185, 202, 299, 418
CviQI GTAC 2 cut(s) 109, 305
DdeI CTNAG 1 cut(s) 198
Eco130I CCWWGG 1 cut(s) 104
Eco47I GGWCC 1 cut(s) 44
Eco91I GGTNACC 1 cut(s) 59
EcoO65I GGTNACC 1 cut(s) 59
EcoRII CCWGG 2 cut(s) 52, 413
EcoT14I CCWWGG 1 cut(s) 104
ErhI CCWWGG 1 cut(s) 104
Esp3I CGTCTC 1 cut(s) 415
FaiI YATR 2 cut(s) 170, 435
FaqI GGGAC 1 cut(s) 273
FblI GTMKAC 1 cut(s) 192
FspBI CTAG 3 cut(s) 105, 308, 428
HgaI GACGC 1 cut(s) 322
Hin1I GRCGYC 1 cut(s) 333
HphI GGTGA 2 cut(s) 71, 223
Hpy166II GTNNAC 1 cut(s) 193
Hpy188III TCNNGA 1 cut(s) 16
Hpy8I GTNNAC 1 cut(s) 193
HpyAV CCTTC 1 cut(s) 223
HpyCH4V TGCA 2 cut(s) 387, 422
HpyF10VI GCNNNNNNNGC 1 cut(s) 393
HpyF3I CTNAG 1 cut(s) 198
Hsp92I GRCGYC 1 cut(s) 333
KpnI GGTACC 1 cut(s) 112
LmnI GCTCC 2 cut(s) 106, 207
LpnPI CCDG 8 cut(s) 13, 29, 39, 66, 99, 400, 406, 427
LweI GCATC 2 cut(s) 88, 164
MaeI CTAG 3 cut(s) 105, 308, 428
MaeIII GTNAC 2 cut(s) 59, 334
MboII GAAGA 2 cut(s) 136, 250
MluCI AATT 3 cut(s) 269, 360, 423
MnlI CCTC 7 cut(s) 44, 57, 60, 216, 233, 245, 262
MseI TTAA 1 cut(s) 39
MspR9I CCNGG 2 cut(s) 54, 415
MvaI CCWGG 2 cut(s) 54, 415
MwoI GCNNNNNNNGC 1 cut(s) 393
NlaIV GGNNCC 2 cut(s) 32, 110
NmuCI GTSAC 2 cut(s) 59, 334
PsiI TTATAA 1 cut(s) 435
Psp6I CCWGG 2 cut(s) 52, 413
PspEI GGTNACC 1 cut(s) 59
PspGI CCWGG 2 cut(s) 52, 413
PspN4I GGNNCC 2 cut(s) 32, 110
PspPI GGNCC 1 cut(s) 44
RsaI GTAC 2 cut(s) 110, 306
RsaNI GTAC 2 cut(s) 109, 305
SaqAI TTAA 1 cut(s) 39
Sau96I GGNCC 1 cut(s) 44
ScaI AGTACT 1 cut(s) 306
ScrFI CCNGG 2 cut(s) 54, 415
SetI ASST 9 cut(s) 32, 79, 110, 175, 187, 204, 215, 254, 395
SfaNI GCATC 2 cut(s) 88, 164
SfcI CTRYAG 1 cut(s) 168
SinI GGWCC 1 cut(s) 44
SmlI CTYRAG 2 cut(s) 186, 300
SmoI CTYRAG 2 cut(s) 186, 300
Sse9I AATT 3 cut(s) 269, 360, 423
SsiI CCGC 1 cut(s) 112
SspMI CTAG 3 cut(s) 105, 308, 428
StyD4I CCNGG 2 cut(s) 52, 413
StyI CCWWGG 1 cut(s) 104
TaqII GACCGA 1 cut(s) 327
TasI AATT 3 cut(s) 269, 360, 423
TatI WGTACW 1 cut(s) 304
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TseFI GTSAC 2 cut(s) 59, 334
Tsp45I GTSAC 2 cut(s) 59, 334
TspDTI ATGAA 4 cut(s) 250, 262, 337, 388
TspGWI ACGGA 1 cut(s) 354
VpaK11BI GGWCC 1 cut(s) 44
XapI RAATTY 1 cut(s) 269
XmaJI CCTAGG 1 cut(s) 104
XmiI GTMKAC 1 cut(s) 192
XspI CTAG 3 cut(s) 105, 308, 428
ZrmI AGTACT 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.