Rorug06G0461600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000512
Physical Location & Seq
Reverse (-)
58759677 .. 58764508
4832 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0461600.1

Sequence Viewer

Length: 1620 bp
ATGGTCGACCACGAACGCCTTCTGGCGAGAGAGCGGCTACAGATCGAGCAGATTCGAGCACTCGATCTCGAGGAGCTGGAGGTCGAGGAGGTCGATGACGACTACAACGACGACTCTTCCGCCGACGACGCCGCCGCCGCCGCCACTGGCCGCGGCATGGCTGATGAATATACCTTCAATACTTGTTTGGCTTCATTGCATACGTATCTTGGCGAGGTTGAAGACACTCATCATAGGATGGCGTTTTTGGATGGCGGTGCGGTATTGAACCTCCCAATCTTCTATCTCGAAGGAGTTGTCCTGTTCCCAGACGCTACCCTTCCACTAAGAGTTATTCAACCCAATTTTGTAGTCGCTATTGAGAGAGCACTATCCCAAGTTGACGCTCCTTATACCATTGGTGTGATTCGTGTTTACAGAGATCCCAACAATAGAAGCATAAAGTTTGCAAATATTGGGACAACTGCGGAGATTCGCCAATATAGGAGATTAGAGGATGGCTCACTGAACGTGGTAACCCGTGGTCAACAGCGATTTCGTCTTAGACGCCGTTGGATTGATGTGGAAGGAGCGCCATACGGGGAAATCCAAATTATAGAAGAAGATGTACCATTGAGGGCTCCACGGGCTGCATTTGGAGATCTGGCACCATTTAGTAATCGAAAAGGCCATAGTTTCCCGCGTGCAATGCCTTCGCACGCTTCTCGTGGAAATTCAAATGGATCTATGGATGTGGACAATGACTCAGAGGCAAATTCAGATGAAAGCTTTGAGAGTGCACTTTCTTTGACAGAAAAGGGAATTCACCAATCTGCAATTGAATCCTATTATGGATCTGATGTGTCAACAAGCAGTGATGGTGAGAAGTCAGAATTCTTATCTCAAGGATCACAATCAAAAGACTCTGATTCCACAGATTCATTGCATTCGTGCCCTGAGAGTTTGGTTGATTTGGGGAGCAGTTCCATATCGGAGATGCAATCATCCAAACAGAAAGATCCAAGTAGTTGGAGAAATACAGACTCTAAACAGATACGTAGAGTTCCAAGAGCATTCTGGCCCTATTGGGTATATCGCATGTATGACTCCTATTGTCTTGCTCAAGGAGTGGCAGATATGTGGAAACAGATAGTTGGGGCACCATTAATGGATGGTCTGGTGAAGAAGCCTGATCTTTTGTCATTTTACATCGCTAGTAAACTTCCTGTTTCTGAATCTACAAGGCAGGAGCTTTTGGAGATTGATGGTATTTCATATAGGTTACGTCGGGAAATTGAGTTGCTTCAGACTGTTAATCTTCTCCGGTGTAAAACTTGTCAGACTGTTTTTGCAAGGCGGAGTGATATGCTAGTGATGTCAAGTGATGGTCCTCTTGGTGCTTATGTAAACCCCTATGGTTGTGTACACGAGATAATGACTCTCTACAAAGCAACTGGCTTGGCACTCGTAGGTTCAGCAGTGAAAGAATACAGCTGGTTTCCTGGGTATGCATGGACAGTAACAAACTGTGCCACCTGTGAAACTCAAATGGGTTGGCTCTTCACAGCCACAAAAAAGAATTTGAAGCCTAAATTGTTTTGGGGGATTCGGAGTTCCCAAGTTTCTGATGACTTGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

539

Amino Acids

60.44

Weight (kDa)

5.09

Isoelectric Point (pI)

50.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LON_substr_bdg PF02190 90 - 214 2e-22 ATP-dependent protease La (LON) substrate-binding domain
Yippee-Mis18 PF03226 434 - 533 1.4e-07 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 646, 1138
AccBSI CCGCTC 1 cut(s) 34
AccI GTMKAC 1 cut(s) 6
AccII CGCG 2 cut(s) 153, 682
AclWI GGATC 5 cut(s) 416, 730, 841, 895, 992
AcoI YGGCCR 1 cut(s) 148
AcsI RAATTY 5 cut(s) 712, 754, 801, 872, 1558
AcuI CTGAAG 1 cut(s) 1268
AcyI GRCGYC 2 cut(s) 129, 547
AfaI GTAC 2 cut(s) 609, 1404
AfiI CCNNNNNNNGG 1 cut(s) 157
AgsI TTSAA 7 cut(s) 178, 221, 268, 338, 717, 821, 1564
AjnI CCWGG 1 cut(s) 1480
AloI GAACNNNNNNTCC 2 cut(s) 1576, 1608
AluBI AGCT 4 cut(s) 76, 768, 1231, 1473
AluI AGCT 4 cut(s) 76, 768, 1231, 1473
Alw21I GWGCWC 3 cut(s) 61, 370, 781
Alw44I GTGCAC 1 cut(s) 777
AlwI GGATC 5 cut(s) 416, 730, 841, 895, 992
Ama87I CYCGRG 1 cut(s) 68
AoxI GGCC 3 cut(s) 148, 667, 1058
ApaLI GTGCAC 1 cut(s) 777
ApeKI GCWGC 1 cut(s) 629
ApoI RAATTY 5 cut(s) 712, 754, 801, 872, 1558
ArsI GACNNNNNNTTYG 2 cut(s) 282, 314
AseI ATTAAT 1 cut(s) 1145
Asp700I GAANNNNTTC 1 cut(s) 18
AspLEI GCGC 1 cut(s) 574
AspS9I GGNCC 2 cut(s) 1059, 1367
AsuHPI GGTGA 3 cut(s) 797, 872, 1171
AvaI CYCGRG 1 cut(s) 68
AvaII GGWCC 1 cut(s) 1367
BaeGI GKGCMC 3 cut(s) 781, 935, 1141
BanI GGYRCC 2 cut(s) 646, 1138
BanII GRGCYC 1 cut(s) 622
BarI GAAGNNNNNNTAC 2 cut(s) 591, 623
BauI CACGAG 2 cut(s) 705, 1406
BbsI GAAGAC 1 cut(s) 228
Bbv12I GWGCWC 3 cut(s) 61, 370, 781
BbvI GCAGC 1 cut(s) 616
BccI CCATC 7 cut(s) 232, 245, 491, 851, 1145, 1238, 1358
BceAI ACGGC 1 cut(s) 534
BcgI CGANNNNNNTGC 4 cut(s) 675, 686, 709, 720
BciT130I CCWGG 1 cut(s) 1482
BfaI CTAG 2 cut(s) 1194, 1349
BfmI CTRYAG 1 cut(s) 38
BfoI RGCGCY 1 cut(s) 575
BglII AGATCT 1 cut(s) 640
BisI GCNGC 8 cut(s) 35, 132, 135, 138, 141, 151, 154, 630
BlsI GCNGC 8 cut(s) 36, 133, 136, 139, 142, 152, 155, 631
Bme1390I CCNGG 1 cut(s) 1482
Bme18I GGWCC 1 cut(s) 1367
BmeT110I CYCGRG 1 cut(s) 68
BmgT120I GGNCC 2 cut(s) 1059, 1367
BmiI GGNNCC 3 cut(s) 621, 648, 1140
BmrFI CCNGG 1 cut(s) 1482
BmsI GCATC 1 cut(s) 966
BpiI GAAGAC 1 cut(s) 228
BplI GAGNNNNNCTC 2 cut(s) 485, 517
BpmI CTGGAG 1 cut(s) 98
BpuEI CTTGAG 2 cut(s) 867, 1086
BsaAI YACGTR 2 cut(s) 204, 1037
BsaBI GATNNNNATC 1 cut(s) 892
BsaHI GRCGYC 2 cut(s) 129, 547
BsaJI CCNNGG 4 cut(s) 151, 520, 623, 1481
BsaWI WCCGGW 1 cut(s) 1302
Bsc4I CCNNNNNNNGG 1 cut(s) 157
Bse1I ACTGG 2 cut(s) 151, 1438
Bse3DI GCAATG 3 cut(s) 194, 693, 920
Bse8I GATNNNNATC 1 cut(s) 892
BseBI CCWGG 1 cut(s) 1482
BseDI CCNNGG 4 cut(s) 151, 520, 623, 1481
BseGI GGATG 6 cut(s) 243, 256, 502, 736, 983, 1156
BseJI GATNNNNATC 1 cut(s) 892
BseLI CCNNNNNNNGG 1 cut(s) 157
BseMI GCAATG 3 cut(s) 194, 693, 920
BseMII CTCAG 2 cut(s) 759, 927
BseNI ACTGG 2 cut(s) 151, 1438
BseRI GAGGAG 2 cut(s) 86, 101
BseSI GKGCMC 3 cut(s) 781, 935, 1141
BseXI GCAGC 1 cut(s) 616
Bsh1236I CGCG 2 cut(s) 153, 682
BshFI GGCC 3 cut(s) 150, 669, 1060
BshNI GGYRCC 2 cut(s) 646, 1138
BsiHKAI GWGCWC 3 cut(s) 61, 370, 781
BsiHKCI CYCGRG 1 cut(s) 68
BsiSI CCGG 1 cut(s) 1303
BslFI GGGAC 1 cut(s) 472
BslI CCNNNNNNNGG 1 cut(s) 157
BsmFI GGGAC 1 cut(s) 472
BsmI GAATGC 2 cut(s) 925, 1052
BsnI GGCC 3 cut(s) 150, 669, 1060
BsoBI CYCGRG 1 cut(s) 68
Bsp1286I GDGCHC 6 cut(s) 61, 370, 622, 781, 935, 1141
Bsp1407I TGTACA 1 cut(s) 1402
Bsp143I GATC 9 cut(s) 42, 64, 421, 640, 722, 833, 887, 997, 1171
BspANI GGCC 3 cut(s) 150, 669, 1060
BspCNI CTCAG 2 cut(s) 758, 928
BspFNI CGCG 2 cut(s) 153, 682
BspLI GGNNCC 3 cut(s) 621, 648, 1140
BspPI GGATC 5 cut(s) 416, 730, 841, 895, 992
BspQI GCTCTTC 1 cut(s) 1544
BspT107I GGYRCC 2 cut(s) 646, 1138
BsrBI CCGCTC 1 cut(s) 34
BsrDI GCAATG 3 cut(s) 194, 693, 920
BsrGI TGTACA 1 cut(s) 1402
BsrI ACTGG 2 cut(s) 151, 1438
BssECI CCNNGG 4 cut(s) 151, 520, 623, 1481
BssMI GATC 9 cut(s) 42, 64, 421, 640, 722, 833, 887, 997, 1171
BssNI GRCGYC 2 cut(s) 129, 547
BssSI CACGAG 2 cut(s) 705, 1406
Bst2BI CACGAG 2 cut(s) 705, 1406
Bst2UI CCWGG 1 cut(s) 1482
Bst4CI ACNGT 4 cut(s) 1291, 1324, 1498, 1508
Bst6I CTCTTC 2 cut(s) 121, 1544
BstACI GRCGYC 2 cut(s) 129, 547
BstAUI TGTACA 1 cut(s) 1402
BstBAI YACGTR 2 cut(s) 204, 1037
BstC8I GCNNGC 2 cut(s) 684, 699
BstDEI CTNAG 4 cut(s) 326, 542, 745, 936
BstDSI CCRYGG 3 cut(s) 151, 520, 623
BstEII GGTNACC 1 cut(s) 514
BstF5I GGATG 6 cut(s) 243, 256, 502, 736, 983, 1156
BstFNI CGCG 2 cut(s) 153, 682
BstH2I RGCGCY 1 cut(s) 575
BstHHI GCGC 1 cut(s) 574
BstKTI GATC 9 cut(s) 45, 67, 424, 643, 725, 836, 890, 1000, 1174
BstMBI GATC 9 cut(s) 42, 64, 421, 640, 722, 833, 887, 997, 1171
BstMWI GCNNNNNNNGC 5 cut(s) 128, 137, 140, 626, 688
BstNI CCWGG 1 cut(s) 1482
BstNSI RCATGY 1 cut(s) 1081
BstPI GGTNACC 1 cut(s) 514
BstSCI CCNGG 1 cut(s) 1480
BstSFI CTRYAG 1 cut(s) 38
BstSLI GKGCMC 3 cut(s) 781, 935, 1141
BstSNI TACGTA 2 cut(s) 204, 1037
BstUI CGCG 2 cut(s) 153, 682
BstV1I GCAGC 1 cut(s) 616
BstV2I GAAGAC 1 cut(s) 228
BstX2I RGATCY 5 cut(s) 421, 640, 722, 833, 997
BstXI CCANNNNNNTGG 1 cut(s) 1008
BstYI RGATCY 5 cut(s) 421, 640, 722, 833, 997
BsuRI GGCC 3 cut(s) 150, 669, 1060
BtgI CCRYGG 3 cut(s) 151, 520, 623
BtgZI GCGATG 1 cut(s) 1174
BtsCI GGATG 6 cut(s) 243, 256, 502, 736, 983, 1156
BtsI GCAGTG 2 cut(s) 859, 1464
BtsIMutI CAGTG 4 cut(s) 144, 503, 859, 1464
Cac8I GCNNGC 2 cut(s) 684, 699
CfoI GCGC 1 cut(s) 574
Cfr13I GGNCC 2 cut(s) 1059, 1367
Cfr42I CCGCGG 1 cut(s) 154
CseI GACGC 4 cut(s) 137, 320, 392, 555
Csp6I GTAC 2 cut(s) 608, 1403
CviAII CATG 3 cut(s) 157, 1078, 1491
CviQI GTAC 2 cut(s) 608, 1403
DdeI CTNAG 4 cut(s) 326, 542, 745, 936
DpnI GATC 9 cut(s) 44, 66, 423, 642, 724, 835, 889, 999, 1173
DpnII GATC 9 cut(s) 42, 64, 421, 640, 722, 833, 887, 997, 1171
EaeI YGGCCR 1 cut(s) 148
Eam1104I CTCTTC 2 cut(s) 121, 1544
EarI CTCTTC 2 cut(s) 121, 1544
EciI GGCGGA 2 cut(s) 109, 1351
Eco105I TACGTA 2 cut(s) 204, 1037
Eco24I GRGCYC 1 cut(s) 622
Eco47I GGWCC 1 cut(s) 1367
Eco57I CTGAAG 1 cut(s) 1268
Eco88I CYCGRG 1 cut(s) 68
Eco91I GGTNACC 1 cut(s) 514
EcoO65I GGTNACC 1 cut(s) 514
EcoRI GAATTC 2 cut(s) 801, 872
EcoRII CCWGG 1 cut(s) 1480
EcoT22I ATGCAT 1 cut(s) 1492
EcoT38I GRGCYC 1 cut(s) 622
FaeI CATG 3 cut(s) 160, 1081, 1494
FaqI GGGAC 1 cut(s) 472
FatI CATG 3 cut(s) 156, 1077, 1490
FauI CCCGC 1 cut(s) 687
FblI GTMKAC 1 cut(s) 6
Fnu4HI GCNGC 8 cut(s) 35, 132, 135, 138, 141, 151, 154, 630
FokI GGATG 6 cut(s) 250, 263, 509, 743, 970, 1163
FriOI GRGCYC 1 cut(s) 622
Fsp4HI GCNGC 8 cut(s) 35, 132, 135, 138, 141, 151, 154, 630
FspBI CTAG 2 cut(s) 1194, 1349
GlaI GCGC 1 cut(s) 573
GluI GCNGC 8 cut(s) 35, 132, 135, 138, 141, 151, 154, 630
GsuI CTGGAG 1 cut(s) 98
HaeII RGCGCY 1 cut(s) 575
HaeIII GGCC 3 cut(s) 150, 669, 1060
HapII CCGG 1 cut(s) 1303
HgaI GACGC 4 cut(s) 137, 320, 392, 555
HhaI GCGC 1 cut(s) 574
Hin1I GRCGYC 2 cut(s) 129, 547
Hin1II CATG 3 cut(s) 160, 1081, 1494
Hin6I GCGC 1 cut(s) 572
HinP1I GCGC 1 cut(s) 572
HincII GTYRAC 4 cut(s) 7, 382, 527, 846
HindII GTYRAC 4 cut(s) 7, 382, 527, 846
HindIII AAGCTT 1 cut(s) 766
HpaII CCGG 1 cut(s) 1303
HphI GGTGA 3 cut(s) 797, 872, 1171
Hpy188III TCNNGA 3 cut(s) 68, 287, 1268
Hpy99I CGWCG 4 cut(s) 113, 128, 131, 1269
HpyAV CCTTC 6 cut(s) 29, 184, 284, 329, 560, 702
HpyCH4III ACNGT 4 cut(s) 1291, 1324, 1498, 1508
HpyCH4IV ACGT 4 cut(s) 203, 510, 1036, 1264
HpyF10VI GCNNNNNNNGC 5 cut(s) 128, 137, 140, 626, 688
HpyF3I CTNAG 4 cut(s) 326, 542, 745, 936
HpySE526I ACGT 4 cut(s) 203, 510, 1036, 1264
Hsp92I GRCGYC 2 cut(s) 129, 547
Hsp92II CATG 3 cut(s) 160, 1081, 1494
HspAI GCGC 1 cut(s) 572
KspI CCGCGG 1 cut(s) 154
Kzo9I GATC 9 cut(s) 42, 64, 421, 640, 722, 833, 887, 997, 1171
LguI GCTCTTC 1 cut(s) 1544
LmnI GCTCC 6 cut(s) 73, 391, 569, 625, 957, 1228
Lsp1109I GCAGC 1 cut(s) 616
LweI GCATC 1 cut(s) 966
MaeI CTAG 2 cut(s) 1194, 1349
MaeII ACGT 4 cut(s) 203, 510, 1036, 1264
MaeIII GTNAC 3 cut(s) 514, 1260, 1498
MalI GATC 9 cut(s) 44, 66, 423, 642, 724, 835, 889, 999, 1173
MbiI CCGCTC 1 cut(s) 34
MboI GATC 9 cut(s) 42, 64, 421, 640, 722, 833, 887, 997, 1171
MboII GAAGA 8 cut(s) 108, 233, 271, 611, 614, 1174, 1289, 1531
MfeI CAATTG 1 cut(s) 816
MflI RGATCY 5 cut(s) 421, 640, 722, 833, 997
MhlI GDGCHC 6 cut(s) 61, 370, 622, 781, 935, 1141
MlyI GAGTC 6 cut(s) 107, 737, 896, 1016, 1079, 1411
MmeI TCCRAC 2 cut(s) 533, 989
Mph1103I ATGCAT 1 cut(s) 1492
MroXI GAANNNNTTC 1 cut(s) 18
MseI TTAA 2 cut(s) 1145, 1293
MslI CAYNNNNRTG 1 cut(s) 401
MspA1I CMGCKG 2 cut(s) 153, 1473
MspI CCGG 1 cut(s) 1303
MspR9I CCNGG 1 cut(s) 1482
MunI CAATTG 1 cut(s) 816
Mva1269I GAATGC 2 cut(s) 925, 1052
MvaI CCWGG 1 cut(s) 1482
MvnI CGCG 2 cut(s) 153, 682
MwoI GCNNNNNNNGC 5 cut(s) 128, 137, 140, 626, 688
NdeII GATC 9 cut(s) 42, 64, 421, 640, 722, 833, 887, 997, 1171
NlaIII CATG 3 cut(s) 160, 1081, 1494
NlaIV GGNNCC 3 cut(s) 621, 648, 1140
NsiI ATGCAT 1 cut(s) 1492
NspI RCATGY 1 cut(s) 1081
PaeR7I CTCGAG 1 cut(s) 68
PciSI GCTCTTC 1 cut(s) 1544
PcsI WCGNNNNNNNCGW 2 cut(s) 90, 105
PctI GAATGC 2 cut(s) 925, 1052
PdmI GAANNNNTTC 1 cut(s) 18
PfeI GAWTC 8 cut(s) 52, 406, 472, 821, 908, 917, 1214, 1585
PkrI GCNGC 8 cut(s) 36, 133, 136, 139, 142, 152, 155, 631
PleI GAGTC 6 cut(s) 107, 737, 896, 1016, 1079, 1411
PpsI GAGTC 6 cut(s) 107, 737, 896, 1016, 1079, 1411
Ppu21I YACGTR 2 cut(s) 204, 1037
PshBI ATTAAT 1 cut(s) 1145
Psp6I CCWGG 1 cut(s) 1480
PspEI GGTNACC 1 cut(s) 514
PspGI CCWGG 1 cut(s) 1480
PspN4I GGNNCC 3 cut(s) 621, 648, 1140
PspPI GGNCC 2 cut(s) 1059, 1367
PsuI RGATCY 5 cut(s) 421, 640, 722, 833, 997
PvuII CAGCTG 1 cut(s) 1473
RsaI GTAC 2 cut(s) 609, 1404
RsaNI GTAC 2 cut(s) 608, 1403
RseI CAYNNNNRTG 1 cut(s) 401
SacII CCGCGG 1 cut(s) 154
SalI GTCGAC 1 cut(s) 5
SapI GCTCTTC 1 cut(s) 1544
SaqAI TTAA 2 cut(s) 1145, 1293
SatI GCNGC 8 cut(s) 35, 132, 135, 138, 141, 151, 154, 630
Sau3AI GATC 9 cut(s) 42, 64, 421, 640, 722, 833, 887, 997, 1171
Sau96I GGNCC 2 cut(s) 1059, 1367
SchI GAGTC 6 cut(s) 107, 737, 896, 1016, 1079, 1411
ScrFI CCNGG 1 cut(s) 1482
SduI GDGCHC 6 cut(s) 61, 370, 622, 781, 935, 1141
SfaNI GCATC 1 cut(s) 966
SfcI CTRYAG 1 cut(s) 38
Sfr274I CTCGAG 1 cut(s) 68
Sfr303I CCGCGG 1 cut(s) 154
SgrBI CCGCGG 1 cut(s) 154
SinI GGWCC 1 cut(s) 1367
SlaI CTCGAG 1 cut(s) 68
SmiMI CAYNNNNRTG 1 cut(s) 401
SmlI CTYRAG 3 cut(s) 68, 882, 1101
SmoI CTYRAG 3 cut(s) 68, 882, 1101
SnaBI TACGTA 2 cut(s) 204, 1037
SspI AATATT 1 cut(s) 454
SspMI CTAG 2 cut(s) 1194, 1349
StyD4I CCNGG 1 cut(s) 1480
TaaI ACNGT 4 cut(s) 1291, 1324, 1498, 1508
TaiI ACGT 4 cut(s) 206, 513, 1039, 1267
TaqI TCGA 9 cut(s) 6, 45, 55, 63, 69, 84, 93, 288, 661
TatI WGTACW 1 cut(s) 1402
TauI GCSGC 7 cut(s) 37, 134, 137, 140, 143, 153, 156
TfiI GAWTC 8 cut(s) 52, 406, 472, 821, 908, 917, 1214, 1585
Tru1I TTAA 2 cut(s) 1145, 1293
Tru9I TTAA 2 cut(s) 1145, 1293
TscAI CASTG 4 cut(s) 151, 510, 859, 1464
TseI GCWGC 1 cut(s) 629
TspDTI ATGAA 5 cut(s) 180, 183, 777, 909, 1242
TspRI CASTG 4 cut(s) 151, 510, 859, 1464
VneI GTGCAC 1 cut(s) 777
VpaK11BI GGWCC 1 cut(s) 1367
VspI ATTAAT 1 cut(s) 1145
XapI RAATTY 5 cut(s) 712, 754, 801, 872, 1558
XceI RCATGY 1 cut(s) 1081
XcmI CCANNNNNNNNNTGG 1 cut(s) 1053
XhoI CTCGAG 1 cut(s) 68
XmiI GTMKAC 1 cut(s) 6
XmnI GAANNNNTTC 1 cut(s) 18
XspI CTAG 2 cut(s) 1194, 1349
Zsp2I ATGCAT 1 cut(s) 1492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.