MD03G1009500.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
727255 .. 727674
420 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1009500.v1.1.491

Sequence Viewer

Length: 420 bp
ATGATCTTGACCCCGAAGAAGTACCAATACCGGCTGAACCAGCAGCAGGCAGCTCGTGGACTGGGAAAGCACAACTTAGACTGGGCAAAGATCATCGTGGCGTATAGCTTGTCAGCAGGCATTGCAATGGCTCTTGTACCCATCCAATTTCACTCCAAGCAGCTCCCTCTAACCTTTTGCTTTCTCGGTCTCGCAATCACACTTTCCTTTTCTGGTATCATGGTTAGCAAATTTGTTCAGAACTCCAAATGTCCGCGAGTCATAGTTCATCAGTTCCATTATTTCGGTGTCTTCTTCGGAGTGACTGCCTTCTTCATTTCCATCGCAATCCCTTTTCTGCTATGGTTCAAGTGTACTGCATCTGTCATCTATGTGGCTTCAGGCCTTGTAATACTATTTTGTGACCACTACTATAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.72

Weight (kDa)

9.66

Isoelectric Point (pI)

27.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 256
AciI CCGC 1 cut(s) 254
AcsI RAATTY 1 cut(s) 230
AcuI CTGAAG 1 cut(s) 363
AfaI GTAC 3 cut(s) 23, 138, 355
AfiI CCNNNNNNNGG 1 cut(s) 46
AgsI TTSAA 1 cut(s) 349
AluBI AGCT 3 cut(s) 53, 108, 163
AluI AGCT 3 cut(s) 53, 108, 163
Alw26I GTCTC 1 cut(s) 194
AoxI GGCC 1 cut(s) 382
ApeKI GCWGC 3 cut(s) 43, 50, 160
ApoI RAATTY 1 cut(s) 230
BarI GAAGNNNNNNTAC 2 cut(s) 11, 43
BauI CACGAG 1 cut(s) 54
BbsI GAAGAC 1 cut(s) 283
BbvI GCAGC 3 cut(s) 55, 62, 172
BccI CCATC 2 cut(s) 149, 329
BcgI CGANNNNNNTGC 2 cut(s) 35, 69
BcoDI GTCTC 1 cut(s) 194
BisI GCNGC 3 cut(s) 44, 51, 161
BlsI GCNGC 3 cut(s) 45, 52, 162
BmrI ACTGGG 2 cut(s) 71, 91
BmsI GCATC 1 cut(s) 368
BmuI ACTGGG 2 cut(s) 71, 91
BpiI GAAGAC 1 cut(s) 283
BsaI GGTCTC 1 cut(s) 194
Bsc4I CCNNNNNNNGG 1 cut(s) 46
Bse118I RCCGGY 1 cut(s) 30
Bse1I ACTGG 2 cut(s) 66, 86
Bse3DI GCAATG 2 cut(s) 120, 132
BseGI GGATG 1 cut(s) 141
BseLI CCNNNNNNNGG 1 cut(s) 46
BseMI GCAATG 2 cut(s) 120, 132
BseNI ACTGG 2 cut(s) 66, 86
BseXI GCAGC 3 cut(s) 55, 62, 172
Bsh1236I CGCG 1 cut(s) 256
BshFI GGCC 1 cut(s) 384
BsiSI CCGG 1 cut(s) 31
BslI CCNNNNNNNGG 1 cut(s) 46
BsmAI GTCTC 1 cut(s) 194
BsnI GGCC 1 cut(s) 384
Bso31I GGTCTC 1 cut(s) 194
Bsp143I GATC 2 cut(s) 3, 90
BspACI CCGC 1 cut(s) 254
BspANI GGCC 1 cut(s) 384
BspFNI CGCG 1 cut(s) 256
BspTNI GGTCTC 1 cut(s) 194
BsrDI GCAATG 2 cut(s) 120, 132
BsrFI RCCGGY 1 cut(s) 30
BsrI ACTGG 2 cut(s) 66, 86
BssAI RCCGGY 1 cut(s) 30
BssMI GATC 2 cut(s) 3, 90
BssSI CACGAG 1 cut(s) 54
Bst2BI CACGAG 1 cut(s) 54
BstAPI GCANNNNNTGC 1 cut(s) 122
BstC8I GCNNGC 2 cut(s) 48, 118
BstDEI CTNAG 1 cut(s) 76
BstF5I GGATG 1 cut(s) 141
BstFNI CGCG 1 cut(s) 256
BstKTI GATC 2 cut(s) 6, 93
BstMAI GTCTC 1 cut(s) 194
BstMBI GATC 2 cut(s) 3, 90
BstMWI GCNNNNNNNGC 2 cut(s) 40, 122
BstUI CGCG 1 cut(s) 256
BstV1I GCAGC 3 cut(s) 55, 62, 172
BstV2I GAAGAC 1 cut(s) 283
BsuRI GGCC 1 cut(s) 384
BtgZI GCGATG 1 cut(s) 307
BtsCI GGATG 1 cut(s) 141
Cac8I GCNNGC 2 cut(s) 48, 118
Cfr10I RCCGGY 1 cut(s) 30
Csp6I GTAC 3 cut(s) 22, 137, 354
CviAII CATG 1 cut(s) 220
CviJI RGCY 7 cut(s) 34, 53, 108, 131, 163, 377, 384
CviKI_1 RGCY 7 cut(s) 34, 53, 108, 131, 163, 377, 384
CviQI GTAC 3 cut(s) 22, 137, 354
DdeI CTNAG 1 cut(s) 76
DpnI GATC 2 cut(s) 5, 92
DpnII GATC 2 cut(s) 3, 90
Eco147I AGGCCT 1 cut(s) 384
Eco31I GGTCTC 1 cut(s) 194
Eco57I CTGAAG 1 cut(s) 363
FaeI CATG 1 cut(s) 223
FaiI YATR 6 cut(s) 105, 221, 263, 343, 372, 414
FalI AAGNNNNNCTT 2 cut(s) 59, 91
FatI CATG 1 cut(s) 219
Fnu4HI GCNGC 3 cut(s) 44, 51, 161
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 3 cut(s) 44, 51, 161
GluI GCNGC 3 cut(s) 44, 51, 161
HaeIII GGCC 1 cut(s) 384
HapII CCGG 1 cut(s) 31
Hin1II CATG 1 cut(s) 223
HinfI GANTC 1 cut(s) 258
HpaII CCGG 1 cut(s) 31
Hpy166II GTNNAC 2 cut(s) 59, 354
Hpy188I TCNGA 2 cut(s) 240, 299
Hpy188III TCNNGA 1 cut(s) 7
Hpy8I GTNNAC 2 cut(s) 59, 354
HpyAV CCTTC 1 cut(s) 319
HpyCH4V TGCA 2 cut(s) 125, 359
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 122
HpyF3I CTNAG 1 cut(s) 76
Hsp92II CATG 1 cut(s) 223
Kzo9I GATC 2 cut(s) 3, 90
LmnI GCTCC 1 cut(s) 168
LpnPI CCDG 8 cut(s) 32, 44, 47, 53, 67, 102, 198, 366
Lsp1109I GCAGC 3 cut(s) 55, 62, 172
LweI GCATC 1 cut(s) 368
MaeIII GTNAC 2 cut(s) 301, 401
MalI GATC 2 cut(s) 5, 92
MboI GATC 2 cut(s) 3, 90
MboII GAAGA 4 cut(s) 28, 283, 286, 304
MluCI AATT 3 cut(s) 146, 230, 415
MlyI GAGTC 1 cut(s) 267
MnlI CCTC 1 cut(s) 177
MslI CAYNNNNRTG 2 cut(s) 125, 371
MspI CCGG 1 cut(s) 31
MvnI CGCG 1 cut(s) 256
MwoI GCNNNNNNNGC 2 cut(s) 40, 122
NdeII GATC 2 cut(s) 3, 90
NlaIII CATG 1 cut(s) 223
NmuCI GTSAC 2 cut(s) 301, 401
PceI AGGCCT 1 cut(s) 384
PkrI GCNGC 3 cut(s) 45, 52, 162
PleI GAGTC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 266
RsaI GTAC 3 cut(s) 23, 138, 355
RsaNI GTAC 3 cut(s) 22, 137, 354
RseI CAYNNNNRTG 2 cut(s) 125, 371
SatI GCNGC 3 cut(s) 44, 51, 161
Sau3AI GATC 2 cut(s) 3, 90
SchI GAGTC 1 cut(s) 267
SetI ASST 4 cut(s) 55, 110, 165, 176
SfaNI GCATC 1 cut(s) 368
SmiMI CAYNNNNRTG 2 cut(s) 125, 371
Sse9I AATT 3 cut(s) 146, 230, 415
SseBI AGGCCT 1 cut(s) 384
SsiI CCGC 1 cut(s) 254
StuI AGGCCT 1 cut(s) 384
TaqII GACCGA 1 cut(s) 176
TasI AATT 3 cut(s) 146, 230, 415
TatI WGTACW 1 cut(s) 353
TseFI GTSAC 2 cut(s) 301, 401
TseI GCWGC 3 cut(s) 43, 50, 160
Tsp45I GTSAC 2 cut(s) 301, 401
TspDTI ATGAA 2 cut(s) 257, 304
XapI RAATTY 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.