FvH4_5g13130

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000512
Physical Location & Seq
Reverse (-)
7412475 .. 7412945
471 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g13130.t1

Sequence Viewer

Length: 471 bp
ATGAGTTTTTCTGCTGCTATTACAAAACTGCTGCAGCTACTTCAACAGCTTGTTTCATTTCATGGTCCTCCAACTCCTCCTGACCCAGAAGCAGTGGCGCAAGCTGATCAAGTTAATCCAGGGCGCCAGAACTTAGACTGGGCTAAGATAATTGTGGTGTATAGCTTGGCATCAGCAATCGACATAGCACTCCTCTCACTCCAAGTTCACTCCCAACTTCCTGTAGTCTTCTACTTTCTGGAGCTTGCTATCTTGCTTGCCTTTACTTGTTTCTTCACAGGCAAGACAGTTCATTCCAACTCTCCACTAGTTGCTCAGGTGCTCGAGCGATTTGGCATCTTCTTTGGCGTCAGTGCCTTCTTCATTTCCGTCACTATTCCGTTTCCTGATGTCTGGTTCAAATGCATAGCATGCTTCGTCTACGTAGTCTCATGGCTTGTGATATTCTTTTGTAACTCCTTCTCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.28

Weight (kDa)

5.78

Isoelectric Point (pI)

30.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 123
AccI GTMKAC 1 cut(s) 420
AcyI GRCGYC 2 cut(s) 124, 348
AgsI TTSAA 2 cut(s) 44, 400
AhlI ACTAGT 1 cut(s) 307
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 5 cut(s) 37, 49, 104, 165, 244
AluI AGCT 5 cut(s) 37, 49, 104, 165, 244
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 1 cut(s) 433
Ama87I CYCGRG 1 cut(s) 323
ApeKI GCWGC 3 cut(s) 14, 31, 34
AspLEI GCGC 2 cut(s) 100, 126
AspS9I GGNCC 1 cut(s) 65
AvaI CYCGRG 1 cut(s) 323
AvaII GGWCC 1 cut(s) 65
BanI GGYRCC 1 cut(s) 123
BbsI GAAGAC 1 cut(s) 220
Bbv12I GWGCWC 1 cut(s) 324
BbvI GCAGC 2 cut(s) 18, 46
BciT130I CCWGG 1 cut(s) 120
BclI TGATCA 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 433
BcuI ACTAGT 1 cut(s) 307
BfaI CTAG 1 cut(s) 308
BfmI CTRYAG 2 cut(s) 32, 222
BfoI RGCGCY 1 cut(s) 127
BisI GCNGC 3 cut(s) 15, 32, 35
BlsI GCNGC 3 cut(s) 16, 33, 36
Bme1390I CCNGG 1 cut(s) 120
Bme18I GGWCC 1 cut(s) 65
BmeT110I CYCGRG 1 cut(s) 323
BmgT120I GGNCC 1 cut(s) 65
BmiI GGNNCC 1 cut(s) 125
BmrFI CCNGG 1 cut(s) 120
BmrI ACTGGG 1 cut(s) 148
BmsI GCATC 2 cut(s) 179, 345
BmuI ACTGGG 1 cut(s) 148
BpiI GAAGAC 1 cut(s) 220
BpmI CTGGAG 1 cut(s) 260
Bpu10I CCTNAGC 1 cut(s) 315
BsaAI YACGTR 1 cut(s) 424
BsaHI GRCGYC 2 cut(s) 124, 348
BsaJI CCNNGG 1 cut(s) 119
Bse1I ACTGG 1 cut(s) 143
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 119
BseMII CTCAG 1 cut(s) 329
BseNI ACTGG 1 cut(s) 143
BseRI GAGGAG 2 cut(s) 66, 182
BseXI GCAGC 2 cut(s) 18, 46
BshNI GGYRCC 1 cut(s) 123
BsiHKAI GWGCWC 1 cut(s) 324
BsiHKCI CYCGRG 1 cut(s) 323
BsmAI GTCTC 1 cut(s) 433
BsoBI CYCGRG 1 cut(s) 323
Bsp1286I GDGCHC 1 cut(s) 324
Bsp143I GATC 1 cut(s) 106
BspCNI CTCAG 1 cut(s) 328
BspLI GGNNCC 1 cut(s) 125
BspMAI CTGCAG 1 cut(s) 36
BspT107I GGYRCC 1 cut(s) 123
BsrI ACTGG 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 119
BssMI GATC 1 cut(s) 106
BssNI GRCGYC 2 cut(s) 124, 348
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 1 cut(s) 289
BstACI GRCGYC 2 cut(s) 124, 348
BstAPI GCANNNNNTGC 1 cut(s) 411
BstBAI YACGTR 1 cut(s) 424
BstC8I GCNNGC 4 cut(s) 102, 246, 258, 412
BstDEI CTNAG 3 cut(s) 133, 144, 315
BstH2I RGCGCY 1 cut(s) 127
BstHHI GCGC 2 cut(s) 100, 126
BstKTI GATC 1 cut(s) 109
BstMAI GTCTC 1 cut(s) 433
BstMBI GATC 1 cut(s) 106
BstMWI GCNNNNNNNGC 1 cut(s) 411
BstNI CCWGG 1 cut(s) 120
BstNSI RCATGY 1 cut(s) 414
BstSCI CCNGG 1 cut(s) 118
BstSFI CTRYAG 2 cut(s) 32, 222
BstSNI TACGTA 1 cut(s) 424
BstV1I GCAGC 2 cut(s) 18, 46
BstV2I GAAGAC 1 cut(s) 220
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 2 cut(s) 99, 358
Cac8I GCNNGC 4 cut(s) 102, 246, 258, 412
CfoI GCGC 2 cut(s) 100, 126
Cfr13I GGNCC 1 cut(s) 65
CseI GACGC 1 cut(s) 337
CviAII CATG 3 cut(s) 62, 411, 432
CviJI RGCY 7 cut(s) 37, 49, 104, 143, 165, 244, 436
CviKI_1 RGCY 7 cut(s) 37, 49, 104, 143, 165, 244, 436
DdeI CTNAG 3 cut(s) 133, 144, 315
DinI GGCGCC 1 cut(s) 125
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
Eco105I TACGTA 1 cut(s) 424
Eco47I GGWCC 1 cut(s) 65
Eco88I CYCGRG 1 cut(s) 323
EcoRII CCWGG 1 cut(s) 118
EcoT22I ATGCAT 1 cut(s) 407
EgeI GGCGCC 1 cut(s) 125
EheI GGCGCC 1 cut(s) 125
FaeI CATG 3 cut(s) 65, 414, 435
FaiI YATR 6 cut(s) 63, 162, 185, 407, 412, 433
FatI CATG 3 cut(s) 61, 410, 431
FbaI TGATCA 1 cut(s) 106
FblI GTMKAC 1 cut(s) 420
Fnu4HI GCNGC 3 cut(s) 15, 32, 35
Fsp4HI GCNGC 3 cut(s) 15, 32, 35
FspBI CTAG 1 cut(s) 308
GlaI GCGC 2 cut(s) 99, 125
GluI GCNGC 3 cut(s) 15, 32, 35
GsuI CTGGAG 1 cut(s) 260
HaeII RGCGCY 1 cut(s) 127
HgaI GACGC 1 cut(s) 337
HhaI GCGC 2 cut(s) 100, 126
Hin1I GRCGYC 2 cut(s) 124, 348
Hin1II CATG 3 cut(s) 65, 414, 435
Hin6I GCGC 2 cut(s) 98, 124
HinP1I GCGC 2 cut(s) 98, 124
Hpy166II GTNNAC 2 cut(s) 208, 421
Hpy188III TCNNGA 3 cut(s) 80, 239, 386
Hpy8I GTNNAC 2 cut(s) 208, 421
HpyAV CCTTC 2 cut(s) 367, 469
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4IV ACGT 1 cut(s) 423
HpyCH4V TGCA 2 cut(s) 34, 405
HpyF10VI GCNNNNNNNGC 1 cut(s) 411
HpyF3I CTNAG 3 cut(s) 133, 144, 315
HpySE526I ACGT 1 cut(s) 423
Hsp92I GRCGYC 2 cut(s) 124, 348
Hsp92II CATG 3 cut(s) 65, 414, 435
HspAI GCGC 2 cut(s) 98, 124
KasI GGCGCC 1 cut(s) 123
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 1 cut(s) 106
LmnI GCTCC 1 cut(s) 241
Lsp1109I GCAGC 2 cut(s) 18, 46
LweI GCATC 2 cut(s) 179, 345
MaeI CTAG 1 cut(s) 308
MaeII ACGT 1 cut(s) 423
MaeIII GTNAC 2 cut(s) 370, 452
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MboII GAAGA 4 cut(s) 220, 265, 331, 352
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 1 cut(s) 150
Mly113I GGCGCC 1 cut(s) 124
MmeI TCCRAC 2 cut(s) 95, 321
MnlI CCTC 3 cut(s) 78, 87, 203
Mph1103I ATGCAT 1 cut(s) 407
MseI TTAA 2 cut(s) 114, 469
MspR9I CCNGG 1 cut(s) 120
MvaI CCWGG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 411
NarI GGCGCC 1 cut(s) 124
NdeII GATC 1 cut(s) 106
NlaIII CATG 3 cut(s) 65, 414, 435
NlaIV GGNNCC 1 cut(s) 125
NmuCI GTSAC 1 cut(s) 370
NsiI ATGCAT 1 cut(s) 407
NspI RCATGY 1 cut(s) 414
PaeI GCATGC 1 cut(s) 414
PaeR7I CTCGAG 1 cut(s) 323
PkrI GCNGC 3 cut(s) 16, 33, 36
PluTI GGCGCC 1 cut(s) 127
Ppu21I YACGTR 1 cut(s) 424
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 1 cut(s) 125
PspPI GGNCC 1 cut(s) 65
PspXI VCTCGAGB 1 cut(s) 323
PstI CTGCAG 1 cut(s) 36
SaqAI TTAA 2 cut(s) 114, 469
SatI GCNGC 3 cut(s) 15, 32, 35
Sau3AI GATC 1 cut(s) 106
Sau96I GGNCC 1 cut(s) 65
ScrFI CCNGG 1 cut(s) 120
SduI GDGCHC 1 cut(s) 324
SetI ASST 7 cut(s) 39, 51, 106, 167, 246, 321, 426
SfaNI GCATC 2 cut(s) 179, 345
SfcI CTRYAG 2 cut(s) 32, 222
SfoI GGCGCC 1 cut(s) 125
Sfr274I CTCGAG 1 cut(s) 323
SinI GGWCC 1 cut(s) 65
SlaI CTCGAG 1 cut(s) 323
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
SnaBI TACGTA 1 cut(s) 424
SpeI ACTAGT 1 cut(s) 307
SphI GCATGC 1 cut(s) 414
Sse9I AATT 1 cut(s) 150
SspDI GGCGCC 1 cut(s) 123
SspMI CTAG 1 cut(s) 308
StyD4I CCNGG 1 cut(s) 118
TaaI ACNGT 1 cut(s) 289
TaiI ACGT 1 cut(s) 426
TaqI TCGA 2 cut(s) 180, 324
TasI AATT 1 cut(s) 150
Tru1I TTAA 2 cut(s) 114, 469
Tru9I TTAA 2 cut(s) 114, 469
TscAI CASTG 2 cut(s) 99, 358
TseFI GTSAC 1 cut(s) 370
TseI GCWGC 3 cut(s) 14, 31, 34
Tsp45I GTSAC 1 cut(s) 370
TspDTI ATGAA 4 cut(s) 45, 50, 281, 352
TspGWI ACGGA 2 cut(s) 358, 369
TspRI CASTG 2 cut(s) 99, 358
VpaK11BI GGWCC 1 cut(s) 65
XceI RCATGY 1 cut(s) 414
XhoI CTCGAG 1 cut(s) 323
XmiI GTMKAC 1 cut(s) 420
XspI CTAG 1 cut(s) 308
Zsp2I ATGCAT 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.