RchiOBHm_Chr7g0240781

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000512
Physical Location & Seq
Reverse (-)
66770841 .. 66771546
706 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21579

Sequence Viewer

Length: 534 bp
ATGAGGTTCTCTACCAATGGTCTCAAAACATTTCTCCGGGGAGTCATTGCAAAACTTGGTCGGGTTCCTGATCCTCGTGACGTAGAAATGGCTCAACCAACGGACGTAGAAATGGGTCAACCACCGGCAGCAGAAGAGCCCAAAGGCCCCAAACAACCCAACGACCACCTGCTACATTATTGGGCAAATATACTTGCTCTGTTCTGCTCGGCATCCGCCATCGAAATGGCTCTCCTCTCCGCCCAAATCCGCTCACAGCTCCCTGCAATCTTTTGCTTCCTCGGATTCACCATAATACTTGCCTTTACTTGCTTCTTTGTTGGCAGATGTATTCGCTCCATGTTCGAACAAGCGGCTCAGGTGCTCGAGCGAGTCGACATTTTCCTTGGGGTCACTGCAATCTTCATATCCATCACTATTCCATTTCCCGCTCTCTGGTTCAAATGTGTCACCGGCTTCATCTATGTGCTCTGCTGGCTTACAATCTTGGCTTGCAATTACTTCCATTCTTACCTGCTACAAGTATATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

19.95

Weight (kDa)

7.58

Isoelectric Point (pI)

43.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 177
Acc36I ACCTGC 2 cut(s) 177, 522
AccBSI CCGCTC 2 cut(s) 252, 431
AccI GTMKAC 1 cut(s) 375
AciI CCGC 5 cut(s) 216, 240, 250, 353, 429
AclWI GGATC 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 435
AgsI TTSAA 1 cut(s) 442
AluBI AGCT 1 cut(s) 259
AluI AGCT 1 cut(s) 259
Alw21I GWGCWC 2 cut(s) 366, 471
Alw26I GTCTC 1 cut(s) 26
AlwI GGATC 1 cut(s) 65
Ama87I CYCGRG 1 cut(s) 365
AoxI GGCC 1 cut(s) 145
ApeKI GCWGC 1 cut(s) 128
AspS9I GGNCC 1 cut(s) 146
AsuC2I CCSGG 1 cut(s) 38
AsuHPI GGTGA 2 cut(s) 280, 442
AsuII TTCGAA 1 cut(s) 345
AvaI CYCGRG 1 cut(s) 365
BanII GRGCYC 1 cut(s) 141
BauI CACGAG 1 cut(s) 75
Bbv12I GWGCWC 2 cut(s) 366, 471
BbvI GCAGC 1 cut(s) 140
BccI CCATC 2 cut(s) 227, 419
BcnI CCSGG 1 cut(s) 38
BcoDI GTCTC 1 cut(s) 26
BfuAI ACCTGC 2 cut(s) 177, 522
BisI GCNGC 2 cut(s) 129, 354
BlsI GCNGC 2 cut(s) 130, 355
Bme1390I CCNGG 1 cut(s) 38
BmeT110I CYCGRG 1 cut(s) 365
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 2 cut(s) 66, 148
BmrFI CCNGG 1 cut(s) 38
BmsI GCATC 1 cut(s) 221
Bpu10I CCTNAGC 1 cut(s) 357
Bpu14I TTCGAA 1 cut(s) 345
BpuMI CCSGG 1 cut(s) 38
BsaI GGTCTC 1 cut(s) 26
BsaJI CCNNGG 3 cut(s) 37, 280, 385
Bsc4I CCNNNNNNNGG 1 cut(s) 435
Bse118I RCCGGY 2 cut(s) 124, 452
Bse3DI GCAATG 1 cut(s) 45
BseDI CCNNGG 3 cut(s) 37, 280, 385
BseGI GGATG 1 cut(s) 212
BseLI CCNNNNNNNGG 1 cut(s) 435
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 371
BseRI GAGGAG 1 cut(s) 224
BseXI GCAGC 1 cut(s) 140
BshFI GGCC 1 cut(s) 147
BsiHKAI GWGCWC 2 cut(s) 366, 471
BsiHKCI CYCGRG 1 cut(s) 365
BsiSI CCGG 3 cut(s) 37, 125, 453
BslI CCNNNNNNNGG 1 cut(s) 435
BsmAI GTCTC 1 cut(s) 26
BsnI GGCC 1 cut(s) 147
Bso31I GGTCTC 1 cut(s) 26
BsoBI CYCGRG 1 cut(s) 365
Bsp119I TTCGAA 1 cut(s) 345
Bsp1286I GDGCHC 3 cut(s) 141, 366, 471
Bsp143I GATC 1 cut(s) 70
BspACI CCGC 5 cut(s) 216, 240, 250, 353, 429
BspANI GGCC 1 cut(s) 147
BspCNI CTCAG 1 cut(s) 370
BspLI GGNNCC 2 cut(s) 66, 148
BspMI ACCTGC 2 cut(s) 177, 522
BspPI GGATC 1 cut(s) 65
BspQI GCTCTTC 1 cut(s) 129
BspT104I TTCGAA 1 cut(s) 345
BspTNI GGTCTC 1 cut(s) 26
BsrBI CCGCTC 2 cut(s) 252, 431
BsrDI GCAATG 1 cut(s) 45
BsrFI RCCGGY 2 cut(s) 124, 452
BssAI RCCGGY 2 cut(s) 124, 452
BssECI CCNNGG 3 cut(s) 37, 280, 385
BssMI GATC 1 cut(s) 70
BssSI CACGAG 1 cut(s) 75
BssT1I CCWWGG 1 cut(s) 385
Bst2BI CACGAG 1 cut(s) 75
Bst6I CTCTTC 1 cut(s) 129
BstBI TTCGAA 1 cut(s) 345
BstC8I GCNNGC 2 cut(s) 476, 493
BstDEI CTNAG 1 cut(s) 357
BstF5I GGATG 1 cut(s) 212
BstKTI GATC 1 cut(s) 73
BstMAI GTCTC 1 cut(s) 26
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 1 cut(s) 475
BstSCI CCNGG 1 cut(s) 36
BstV1I GCAGC 1 cut(s) 140
BstXI CCANNNNNNTGG 1 cut(s) 226
BsuRI GGCC 1 cut(s) 147
BtsCI GGATG 1 cut(s) 212
BtsI GCAGTG 1 cut(s) 393
BtsIMutI CAGTG 1 cut(s) 393
BveI ACCTGC 2 cut(s) 177, 522
Cac8I GCNNGC 2 cut(s) 476, 493
Cfr10I RCCGGY 2 cut(s) 124, 452
Cfr13I GGNCC 1 cut(s) 146
CviAII CATG 1 cut(s) 340
CviJI RGCY 9 cut(s) 92, 139, 147, 230, 259, 356, 456, 478, 491
CviKI_1 RGCY 9 cut(s) 92, 139, 147, 230, 259, 356, 456, 478, 491
DdeI CTNAG 1 cut(s) 357
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
EciI GGCGGA 2 cut(s) 205, 229
Eco130I CCWWGG 1 cut(s) 385
Eco24I GRGCYC 1 cut(s) 141
Eco31I GGTCTC 1 cut(s) 26
Eco88I CYCGRG 1 cut(s) 365
EcoO109I RGGNCCY 1 cut(s) 146
EcoT14I CCWWGG 1 cut(s) 385
EcoT38I GRGCYC 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 385
FaeI CATG 1 cut(s) 343
FaiI YATR 9 cut(s) 191, 293, 341, 407, 465, 526, 528, 530, 532
FatI CATG 1 cut(s) 339
FauI CCCGC 1 cut(s) 436
FblI GTMKAC 1 cut(s) 375
Fnu4HI GCNGC 2 cut(s) 129, 354
FokI GGATG 1 cut(s) 199
FriOI GRGCYC 1 cut(s) 141
Fsp4HI GCNGC 2 cut(s) 129, 354
GluI GCNGC 2 cut(s) 129, 354
HaeIII GGCC 1 cut(s) 147
HapII CCGG 3 cut(s) 37, 125, 453
Hin1II CATG 1 cut(s) 343
HincII GTYRAC 2 cut(s) 119, 376
HindII GTYRAC 2 cut(s) 119, 376
HinfI GANTC 3 cut(s) 42, 285, 372
HpaII CCGG 3 cut(s) 37, 125, 453
HphI GGTGA 2 cut(s) 280, 442
Hpy166II GTNNAC 2 cut(s) 119, 376
Hpy188I TCNGA 1 cut(s) 284
Hpy188III TCNNGA 2 cut(s) 68, 77
Hpy8I GTNNAC 2 cut(s) 119, 376
HpyCH4IV ACGT 2 cut(s) 81, 105
HpyCH4V TGCA 4 cut(s) 50, 266, 398, 495
HpyF10VI GCNNNNNNNGC 1 cut(s) 475
HpyF3I CTNAG 1 cut(s) 357
HpySE526I ACGT 2 cut(s) 81, 105
Hsp92II CATG 1 cut(s) 343
Kzo9I GATC 1 cut(s) 70
LguI GCTCTTC 1 cut(s) 129
LmnI GCTCC 2 cut(s) 264, 341
Lsp1109I GCAGC 1 cut(s) 140
LweI GCATC 1 cut(s) 221
MaeII ACGT 2 cut(s) 81, 105
MaeIII GTNAC 3 cut(s) 77, 391, 448
MalI GATC 1 cut(s) 72
MbiI CCGCTC 2 cut(s) 252, 431
MboI GATC 1 cut(s) 70
MboII GAAGA 2 cut(s) 146, 394
MhlI GDGCHC 3 cut(s) 141, 366, 471
MluCI AATT 1 cut(s) 496
MlyI GAGTC 2 cut(s) 51, 381
MnlI CCTC 3 cut(s) 84, 245, 290
MslI CAYNNNNRTG 2 cut(s) 224, 464
MspI CCGG 3 cut(s) 37, 125, 453
MspR9I CCNGG 1 cut(s) 38
MwoI GCNNNNNNNGC 1 cut(s) 475
NciI CCSGG 1 cut(s) 38
NdeII GATC 1 cut(s) 70
NlaIII CATG 1 cut(s) 343
NlaIV GGNNCC 2 cut(s) 66, 148
NmeAIII GCCGAG 1 cut(s) 188
NmuCI GTSAC 3 cut(s) 77, 391, 448
NspV TTCGAA 1 cut(s) 345
PaeR7I CTCGAG 1 cut(s) 365
PaqCI CACCTGC 1 cut(s) 177
PciSI GCTCTTC 1 cut(s) 129
PcsI WCGNNNNNNNCGW 1 cut(s) 372
PfeI GAWTC 1 cut(s) 285
PkrI GCNGC 2 cut(s) 130, 355
PleI GAGTC 2 cut(s) 50, 380
PpsI GAGTC 2 cut(s) 50, 380
PspN4I GGNNCC 2 cut(s) 66, 148
PspPI GGNCC 1 cut(s) 146
PspXI VCTCGAGB 1 cut(s) 365
RseI CAYNNNNRTG 2 cut(s) 224, 464
SalI GTCGAC 1 cut(s) 374
SapI GCTCTTC 1 cut(s) 129
SatI GCNGC 2 cut(s) 129, 354
Sau3AI GATC 1 cut(s) 70
Sau96I GGNCC 1 cut(s) 146
SchI GAGTC 2 cut(s) 51, 381
ScrFI CCNGG 1 cut(s) 38
SduI GDGCHC 3 cut(s) 141, 366, 471
SetI ASST 7 cut(s) 8, 84, 108, 171, 261, 363, 516
SfaNI GCATC 1 cut(s) 221
Sfr274I CTCGAG 1 cut(s) 365
SfuI TTCGAA 1 cut(s) 345
SlaI CTCGAG 1 cut(s) 365
SmiMI CAYNNNNRTG 2 cut(s) 224, 464
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
Sse9I AATT 1 cut(s) 496
SsiI CCGC 5 cut(s) 216, 240, 250, 353, 429
StyD4I CCNGG 1 cut(s) 36
StyI CCWWGG 1 cut(s) 385
TaiI ACGT 2 cut(s) 84, 108
TaqI TCGA 4 cut(s) 222, 345, 366, 375
TasI AATT 1 cut(s) 496
TauI GCSGC 1 cut(s) 356
TfiI GAWTC 1 cut(s) 285
TscAI CASTG 1 cut(s) 400
TseFI GTSAC 3 cut(s) 77, 391, 448
TseI GCWGC 1 cut(s) 128
Tsp45I GTSAC 3 cut(s) 77, 391, 448
TspDTI ATGAA 2 cut(s) 394, 448
TspGWI ACGGA 1 cut(s) 116
TspRI CASTG 1 cut(s) 400
XhoI CTCGAG 1 cut(s) 365
XmiI GTMKAC 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.