Rh7AG062500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000512
Physical Location & Seq
Forward (+)
4343065 .. 4343511
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG062500.1

Sequence Viewer

Length: 447 bp
ATGAACTCTGCAAAGTCATTCCTTACAAAAATGATCCCACTACTCCAGAAGATTGGGCACATTGCTGGTCCTGACCAAGAAGCAATTGTTGAAGTAGCTCAGCACCACAACTTAGATTCTGCAAAGATAATTGTGGTATTTTGCTCCGCATCAGCCATTGACATAGCTCTCATATCTGCCCAGCTTCTCTCCCCGCTCCCTATGGTTTTTTACTTTCTCGCGCTTGCAATCTTATTTGCATTTACTTCTGTTTTCATAAGCATATTCATTCATTCCAGCTGTCCAGAAATAGCTCAGGTGCTCCAGCAATGTGGTGTCTTCTTCGGAGTGACTGCGGTCTTCATATCTATTTCAGTCCCATTTCCTGTCTGGTTCAAATGTACTACCTGCTTCATCTATGCACTGTCCTGGCTTGTAATAATATTTTGTAACTACTTCTACGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.36

Weight (kDa)

6.37

Isoelectric Point (pI)

48.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 395
AccBSI CCGCTC 1 cut(s) 196
AccII CGCG 1 cut(s) 221
AciI CCGC 3 cut(s) 147, 194, 335
AclWI GGATC 1 cut(s) 28
AfaI GTAC 1 cut(s) 382
AgsI TTSAA 2 cut(s) 92, 376
AjnI CCWGG 1 cut(s) 407
AluBI AGCT 5 cut(s) 98, 167, 184, 279, 293
AluI AGCT 5 cut(s) 98, 167, 184, 279, 293
Alw21I GWGCWC 1 cut(s) 303
AlwI GGATC 1 cut(s) 28
AspLEI GCGC 1 cut(s) 223
AspS9I GGNCC 1 cut(s) 68
AvaII GGWCC 1 cut(s) 68
BaeGI GKGCMC 1 cut(s) 60
BbsI GAAGAC 2 cut(s) 310, 331
Bbv12I GWGCWC 1 cut(s) 303
BciT130I CCWGG 1 cut(s) 409
BfuAI ACCTGC 1 cut(s) 395
BlpI GCTNAGC 1 cut(s) 99
Bme1390I CCNGG 1 cut(s) 409
Bme18I GGWCC 1 cut(s) 68
BmgT120I GGNCC 1 cut(s) 68
BmrFI CCNGG 1 cut(s) 409
BmsI GCATC 1 cut(s) 158
BoxI GACNNNNGTC 1 cut(s) 335
BpiI GAAGAC 2 cut(s) 310, 331
BpmI CTGGAG 2 cut(s) 29, 287
Bpu10I CCTNAGC 1 cut(s) 294
Bpu1102I GCTNAGC 1 cut(s) 99
Bse3DI GCAATG 2 cut(s) 60, 314
BseBI CCWGG 1 cut(s) 409
BseMI GCAATG 2 cut(s) 60, 314
BseMII CTCAG 2 cut(s) 113, 308
BseSI GKGCMC 1 cut(s) 60
BseYI CCCAGC 1 cut(s) 180
Bsh1236I CGCG 1 cut(s) 221
BsiHKAI GWGCWC 1 cut(s) 303
BslFI GGGAC 1 cut(s) 341
BsmFI GGGAC 1 cut(s) 341
Bsp1286I GDGCHC 2 cut(s) 60, 303
Bsp143I GATC 1 cut(s) 33
Bsp1720I GCTNAGC 1 cut(s) 99
BspACI CCGC 3 cut(s) 147, 194, 335
BspCNI CTCAG 2 cut(s) 112, 307
BspFNI CGCG 1 cut(s) 221
BspMI ACCTGC 1 cut(s) 395
BspPI GGATC 1 cut(s) 28
BsrBI CCGCTC 1 cut(s) 196
BsrDI GCAATG 2 cut(s) 60, 314
BssMI GATC 1 cut(s) 33
Bst2UI CCWGG 1 cut(s) 409
Bst4CI ACNGT 1 cut(s) 405
BstC8I GCNNGC 1 cut(s) 225
BstDEI CTNAG 3 cut(s) 99, 112, 294
BstFNI CGCG 1 cut(s) 221
BstHHI GCGC 1 cut(s) 223
BstKTI GATC 1 cut(s) 36
BstMBI GATC 1 cut(s) 33
BstNI CCWGG 1 cut(s) 409
BstPAI GACNNNNGTC 1 cut(s) 335
BstSCI CCNGG 1 cut(s) 407
BstSLI GKGCMC 1 cut(s) 60
BstUI CGCG 1 cut(s) 221
BstV2I GAAGAC 2 cut(s) 310, 331
BstXI CCANNNNNNTGG 2 cut(s) 53, 311
BtsIMutI CAGTG 1 cut(s) 401
BveI ACCTGC 1 cut(s) 395
Cac8I GCNNGC 1 cut(s) 225
CfoI GCGC 1 cut(s) 223
Cfr13I GGNCC 1 cut(s) 68
Csp6I GTAC 1 cut(s) 381
CviJI RGCY 7 cut(s) 98, 155, 167, 184, 279, 293, 412
CviKI_1 RGCY 7 cut(s) 98, 155, 167, 184, 279, 293, 412
CviQI GTAC 1 cut(s) 381
DdeI CTNAG 3 cut(s) 99, 112, 294
DpnI GATC 1 cut(s) 35
DpnII GATC 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 407
FaiI YATR 7 cut(s) 164, 173, 203, 257, 263, 344, 399
FaqI GGGAC 1 cut(s) 341
FauI CCCGC 1 cut(s) 201
GlaI GCGC 1 cut(s) 222
GsaI CCCAGC 1 cut(s) 184
GsuI CTGGAG 2 cut(s) 29, 287
HhaI GCGC 1 cut(s) 223
Hin6I GCGC 1 cut(s) 221
HinP1I GCGC 1 cut(s) 221
HinfI GANTC 1 cut(s) 116
Hpy188I TCNGA 1 cut(s) 326
Hpy188III TCNNGA 3 cut(s) 46, 71, 284
HpyCH4III ACNGT 1 cut(s) 405
HpyCH4V TGCA 5 cut(s) 11, 122, 227, 239, 401
HpyF3I CTNAG 3 cut(s) 99, 112, 294
HspAI GCGC 1 cut(s) 221
Kzo9I GATC 1 cut(s) 33
LmnI GCTCC 3 cut(s) 149, 201, 306
LweI GCATC 1 cut(s) 158
MaeIII GTNAC 2 cut(s) 328, 428
MalI GATC 1 cut(s) 35
MbiI CCGCTC 1 cut(s) 196
MboI GATC 1 cut(s) 33
MboII GAAGA 4 cut(s) 61, 310, 313, 331
MfeI CAATTG 1 cut(s) 84
MhlI GDGCHC 2 cut(s) 60, 303
MluCI AATT 2 cut(s) 84, 129
MseI TTAA 1 cut(s) 445
MspA1I CMGCKG 1 cut(s) 279
MspR9I CCNGG 1 cut(s) 409
MunI CAATTG 1 cut(s) 84
MvaI CCWGG 1 cut(s) 409
MvnI CGCG 1 cut(s) 221
NdeII GATC 1 cut(s) 33
NmuCI GTSAC 1 cut(s) 328
PfeI GAWTC 1 cut(s) 116
PshAI GACNNNNGTC 1 cut(s) 335
Psp6I CCWGG 1 cut(s) 407
PspFI CCCAGC 1 cut(s) 180
PspGI CCWGG 1 cut(s) 407
PspPI GGNCC 1 cut(s) 68
PvuII CAGCTG 1 cut(s) 279
RsaI GTAC 1 cut(s) 382
RsaNI GTAC 1 cut(s) 381
SaqAI TTAA 1 cut(s) 445
Sau3AI GATC 1 cut(s) 33
Sau96I GGNCC 1 cut(s) 68
ScrFI CCNGG 1 cut(s) 409
SduI GDGCHC 2 cut(s) 60, 303
SetI ASST 7 cut(s) 100, 169, 186, 281, 295, 300, 389
SfaNI GCATC 1 cut(s) 158
SinI GGWCC 1 cut(s) 68
Sse9I AATT 2 cut(s) 84, 129
SsiI CCGC 3 cut(s) 147, 194, 335
SspI AATATT 1 cut(s) 423
StyD4I CCNGG 1 cut(s) 407
TaaI ACNGT 1 cut(s) 405
TasI AATT 2 cut(s) 84, 129
TatI WGTACW 1 cut(s) 380
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 1 cut(s) 445
Tru9I TTAA 1 cut(s) 445
TscAI CASTG 1 cut(s) 408
TseFI GTSAC 1 cut(s) 328
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 6 cut(s) 17, 244, 256, 260, 331, 382
TspRI CASTG 1 cut(s) 408
VpaK11BI GGWCC 1 cut(s) 68
XcmI CCANNNNNNNNNTGG 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.