Rh7DG062800

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000512
Physical Location & Seq
Forward (+)
4831837 .. 4851577
19741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG062800.1

Sequence Viewer

Length: 693 bp
ATGAAGTCATCATCAGCACTCGTTTCTTCACATTCGCTTGCTTGCTTTCCTTTCTTTGTTAGTTTGTTCTTGGCTTTCCATTTTTTCTGCCACCAAATAGCTGCTAGCAAAATGAGTTTTTCTGCGGCTATTACAAAACTGCTGCAGCTAGTTCAGAAACTTAGCCCATTTCACGGTCTGCCAACTCCTCCTGACCCAGAAGCAGTGGTGCCCGATCATCAAGTACCACGGCGCCAAAACTTAGACTGGGCTATGATAATTGTCGTGTTTAGCTTGGCATCAGCAATCGACATAGCTCTCCTATCAGTCCAAGTTCACTCCCAACTTCCTATAATCTTCTACGTTCTCGAGCTTGCTATCTTGCTTGCCTTTACTTGTTTCTTCACAAGCAAGTTGATTCATTCAAACTGTCCACTAGTCGCTCAGGTGCTCGAGCGATTTCGCATCTTCTTTGGCGTCAGTGCCTTCTTCATATGCATCACAGTTCCGTTTCCGGCTGTCTGCAGCGATGACGATGAGAACAACAAAAGCAGCAGGTGGAGGAGGATACATAAGGACCCAAAACAGCCCTTGAATACTAGAATCAATGACCTACCGAGCAGGATGACGTTGGAGGAAAAGATTGGCCAGATGACACAGATAGAGTGCAGTGTTGCTTCAGCTGAAGTCATGAACAAGTACTACATTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

230

Amino Acids

25.92

Weight (kDa)

7.65

Isoelectric Point (pI)

55.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 525
Acc36I ACCTGC 1 cut(s) 525
AccB1I GGYRCC 2 cut(s) 208, 231
AciI CCGC 1 cut(s) 125
AcoI YGGCCR 1 cut(s) 625
AcuI CTGAAG 2 cut(s) 642, 684
AcyI GRCGYC 2 cut(s) 232, 456
AfaI GTAC 2 cut(s) 225, 680
AfiI CCNNNNNNNGG 1 cut(s) 173
AgsI TTSAA 2 cut(s) 405, 574
AhlI ACTAGT 1 cut(s) 415
AluBI AGCT 6 cut(s) 101, 148, 273, 296, 352, 662
AluI AGCT 6 cut(s) 101, 148, 273, 296, 352, 662
Alw21I GWGCWC 1 cut(s) 432
Ama87I CYCGRG 2 cut(s) 347, 431
AoxI GGCC 1 cut(s) 625
ApeKI GCWGC 5 cut(s) 101, 142, 145, 504, 531
AspLEI GCGC 1 cut(s) 234
AspS9I GGNCC 1 cut(s) 556
AsuNHI GCTAGC 1 cut(s) 104
AvaI CYCGRG 2 cut(s) 347, 431
AvaII GGWCC 1 cut(s) 556
BaeGI GKGCMC 1 cut(s) 213
BalI TGGCCA 1 cut(s) 627
BanI GGYRCC 2 cut(s) 208, 231
Bbv12I GWGCWC 1 cut(s) 432
BbvI GCAGC 5 cut(s) 88, 129, 157, 516, 543
BceAI ACGGC 1 cut(s) 245
BciVI GTATCC 1 cut(s) 540
BcuI ACTAGT 1 cut(s) 415
BfaI CTAG 4 cut(s) 105, 149, 416, 579
BfmI CTRYAG 2 cut(s) 143, 502
BfoI RGCGCY 1 cut(s) 235
BfuAI ACCTGC 1 cut(s) 525
BfuI GTATCC 1 cut(s) 540
BisI GCNGC 6 cut(s) 102, 126, 143, 146, 505, 532
BlsI GCNGC 6 cut(s) 103, 127, 144, 147, 506, 533
BmcAI AGTACT 1 cut(s) 680
Bme18I GGWCC 1 cut(s) 556
BmeT110I CYCGRG 2 cut(s) 347, 431
BmgT120I GGNCC 1 cut(s) 556
BmiI GGNNCC 3 cut(s) 210, 233, 558
BmrI ACTGGG 1 cut(s) 256
BmsI GCATC 3 cut(s) 287, 453, 486
BmtI GCTAGC 1 cut(s) 108
BmuI ACTGGG 1 cut(s) 256
Bpu10I CCTNAGC 1 cut(s) 423
BsaHI GRCGYC 2 cut(s) 232, 456
BsaJI CCNNGG 1 cut(s) 227
Bsc4I CCNNNNNNNGG 1 cut(s) 173
Bse1I ACTGG 1 cut(s) 251
BseDI CCNNGG 1 cut(s) 227
BseGI GGATG 1 cut(s) 609
BseLI CCNNNNNNNGG 1 cut(s) 173
BseMII CTCAG 1 cut(s) 437
BseNI ACTGG 1 cut(s) 251
BseRI GAGGAG 2 cut(s) 177, 556
BseSI GKGCMC 1 cut(s) 213
BseXI GCAGC 5 cut(s) 88, 129, 157, 516, 543
BsgI GTGCAG 1 cut(s) 667
BshFI GGCC 1 cut(s) 627
BshNI GGYRCC 2 cut(s) 208, 231
BsiHKAI GWGCWC 1 cut(s) 432
BsiHKCI CYCGRG 2 cut(s) 347, 431
BsiSI CCGG 1 cut(s) 494
BslI CCNNNNNNNGG 1 cut(s) 173
BsnI GGCC 1 cut(s) 627
BsoBI CYCGRG 2 cut(s) 347, 431
Bsp1286I GDGCHC 2 cut(s) 213, 432
Bsp143I GATC 1 cut(s) 214
BspACI CCGC 1 cut(s) 125
BspANI GGCC 1 cut(s) 627
BspCNI CTCAG 1 cut(s) 436
BspHI TCATGA 1 cut(s) 669
BspLI GGNNCC 3 cut(s) 210, 233, 558
BspMAI CTGCAG 2 cut(s) 147, 506
BspMI ACCTGC 1 cut(s) 525
BspOI GCTAGC 1 cut(s) 108
BspT107I GGYRCC 2 cut(s) 208, 231
BsrI ACTGG 1 cut(s) 251
BssECI CCNNGG 1 cut(s) 227
BssMI GATC 1 cut(s) 214
BssNI GRCGYC 2 cut(s) 232, 456
Bst4CI ACNGT 3 cut(s) 176, 410, 484
BstACI GRCGYC 2 cut(s) 232, 456
BstC8I GCNNGC 5 cut(s) 39, 43, 106, 354, 366
BstDEI CTNAG 3 cut(s) 161, 241, 423
BstDSI CCRYGG 1 cut(s) 227
BstF5I GGATG 1 cut(s) 609
BstH2I RGCGCY 1 cut(s) 235
BstHHI GCGC 1 cut(s) 234
BstKTI GATC 1 cut(s) 217
BstMBI GATC 1 cut(s) 214
BstSFI CTRYAG 2 cut(s) 143, 502
BstSLI GKGCMC 1 cut(s) 213
BstV1I GCAGC 5 cut(s) 88, 129, 157, 516, 543
BsuI GTATCC 1 cut(s) 540
BsuRI GGCC 1 cut(s) 627
BtgI CCRYGG 1 cut(s) 227
BtgZI GCGATG 1 cut(s) 522
BtsCI GGATG 1 cut(s) 609
BtsI GCAGTG 2 cut(s) 210, 655
BtsIMutI CAGTG 3 cut(s) 210, 466, 655
BveI ACCTGC 1 cut(s) 525
Cac8I GCNNGC 5 cut(s) 39, 43, 106, 354, 366
CciI TCATGA 1 cut(s) 669
CfoI GCGC 1 cut(s) 234
Cfr13I GGNCC 1 cut(s) 556
CseI GACGC 1 cut(s) 445
Csp6I GTAC 2 cut(s) 224, 679
CviAII CATG 1 cut(s) 670
CviQI GTAC 2 cut(s) 224, 679
DdeI CTNAG 3 cut(s) 161, 241, 423
DinI GGCGCC 1 cut(s) 233
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
EaeI YGGCCR 1 cut(s) 625
Eco47I GGWCC 1 cut(s) 556
Eco57I CTGAAG 2 cut(s) 642, 684
Eco88I CYCGRG 2 cut(s) 347, 431
EcoO109I RGGNCCY 1 cut(s) 556
EcoT22I ATGCAT 1 cut(s) 479
EgeI GGCGCC 1 cut(s) 233
EheI GGCGCC 1 cut(s) 233
FaeI CATG 1 cut(s) 673
FaiI YATR 7 cut(s) 254, 293, 332, 473, 475, 552, 671
FatI CATG 1 cut(s) 669
FauNDI CATATG 1 cut(s) 473
Fnu4HI GCNGC 6 cut(s) 102, 126, 143, 146, 505, 532
FokI GGATG 1 cut(s) 616
Fsp4HI GCNGC 6 cut(s) 102, 126, 143, 146, 505, 532
FspBI CTAG 4 cut(s) 105, 149, 416, 579
GlaI GCGC 1 cut(s) 233
GluI GCNGC 6 cut(s) 102, 126, 143, 146, 505, 532
HaeII RGCGCY 1 cut(s) 235
HaeIII GGCC 1 cut(s) 627
HapII CCGG 1 cut(s) 494
HgaI GACGC 1 cut(s) 445
HhaI GCGC 1 cut(s) 234
Hin1I GRCGYC 2 cut(s) 232, 456
Hin1II CATG 1 cut(s) 673
Hin6I GCGC 1 cut(s) 232
HinP1I GCGC 1 cut(s) 232
HinfI GANTC 2 cut(s) 397, 582
HpaII CCGG 1 cut(s) 494
Hpy166II GTNNAC 2 cut(s) 316, 413
Hpy188I TCNGA 1 cut(s) 156
Hpy188III TCNNGA 3 cut(s) 191, 347, 670
Hpy8I GTNNAC 2 cut(s) 316, 413
HpyAV CCTTC 1 cut(s) 475
HpyCH4III ACNGT 3 cut(s) 176, 410, 484
HpyCH4IV ACGT 2 cut(s) 342, 608
HpyCH4V TGCA 4 cut(s) 145, 477, 504, 648
HpyF3I CTNAG 3 cut(s) 161, 241, 423
HpySE526I ACGT 2 cut(s) 342, 608
Hsp92I GRCGYC 2 cut(s) 232, 456
Hsp92II CATG 1 cut(s) 673
HspAI GCGC 1 cut(s) 232
KasI GGCGCC 1 cut(s) 231
Kzo9I GATC 1 cut(s) 214
LpnPI CCDG 8 cut(s) 204, 210, 232, 410, 507, 520, 586, 641
Lsp1109I GCAGC 5 cut(s) 88, 129, 157, 516, 543
LweI GCATC 3 cut(s) 287, 453, 486
MaeI CTAG 4 cut(s) 105, 149, 416, 579
MaeII ACGT 2 cut(s) 342, 608
MalI GATC 1 cut(s) 216
MboI GATC 1 cut(s) 214
MboII GAAGA 5 cut(s) 18, 328, 373, 439, 460
MhlI GDGCHC 2 cut(s) 213, 432
MlsI TGGCCA 1 cut(s) 627
MluCI AATT 1 cut(s) 258
MluNI TGGCCA 1 cut(s) 627
Mly113I GGCGCC 1 cut(s) 232
MmeI TCCRAC 1 cut(s) 591
MnlI CCTC 4 cut(s) 198, 534, 537, 607
Mox20I TGGCCA 1 cut(s) 627
Mph1103I ATGCAT 1 cut(s) 479
MscI TGGCCA 1 cut(s) 627
Msp20I TGGCCA 1 cut(s) 627
MspA1I CMGCKG 1 cut(s) 662
MspI CCGG 1 cut(s) 494
NarI GGCGCC 1 cut(s) 232
NdeI CATATG 1 cut(s) 473
NdeII GATC 1 cut(s) 214
NheI GCTAGC 1 cut(s) 104
NlaIII CATG 1 cut(s) 673
NlaIV GGNNCC 3 cut(s) 210, 233, 558
NsiI ATGCAT 1 cut(s) 479
PaeR7I CTCGAG 2 cut(s) 347, 431
PagI TCATGA 1 cut(s) 669
PaqCI CACCTGC 1 cut(s) 525
PfeI GAWTC 2 cut(s) 397, 582
PkrI GCNGC 6 cut(s) 103, 127, 144, 147, 506, 533
PluTI GGCGCC 1 cut(s) 235
PpuMI RGGWCCY 1 cut(s) 556
Psp5II RGGWCCY 1 cut(s) 556
PspN4I GGNNCC 3 cut(s) 210, 233, 558
PspPI GGNCC 1 cut(s) 556
PspPPI RGGWCCY 1 cut(s) 556
PspXI VCTCGAGB 1 cut(s) 431
PsrI GAACNNNNNNTAC 1 cut(s) 665
PstI CTGCAG 2 cut(s) 147, 506
PvuII CAGCTG 1 cut(s) 662
RsaI GTAC 2 cut(s) 225, 680
RsaNI GTAC 2 cut(s) 224, 679
SatI GCNGC 6 cut(s) 102, 126, 143, 146, 505, 532
Sau3AI GATC 1 cut(s) 214
Sau96I GGNCC 1 cut(s) 556
ScaI AGTACT 1 cut(s) 680
SduI GDGCHC 2 cut(s) 213, 432
SfaNI GCATC 3 cut(s) 287, 453, 486
SfcI CTRYAG 2 cut(s) 143, 502
SfoI GGCGCC 1 cut(s) 233
Sfr274I CTCGAG 2 cut(s) 347, 431
SinI GGWCC 1 cut(s) 556
SlaI CTCGAG 2 cut(s) 347, 431
SmlI CTYRAG 2 cut(s) 347, 431
SmoI CTYRAG 2 cut(s) 347, 431
SpeI ACTAGT 1 cut(s) 415
Sse9I AATT 1 cut(s) 258
SsiI CCGC 1 cut(s) 125
SspDI GGCGCC 1 cut(s) 231
SspMI CTAG 4 cut(s) 105, 149, 416, 579
TaaI ACNGT 3 cut(s) 176, 410, 484
TaiI ACGT 2 cut(s) 345, 611
TaqI TCGA 3 cut(s) 288, 348, 432
TasI AATT 1 cut(s) 258
TatI WGTACW 1 cut(s) 678
TauI GCSGC 1 cut(s) 128
TfiI GAWTC 2 cut(s) 397, 582
TscAI CASTG 3 cut(s) 210, 466, 655
TseI GCWGC 5 cut(s) 101, 142, 145, 504, 531
TspDTI ATGAA 4 cut(s) 17, 389, 460, 686
TspGWI ACGGA 1 cut(s) 477
TspRI CASTG 3 cut(s) 210, 466, 655
VpaK11BI GGWCC 1 cut(s) 556
XhoI CTCGAG 2 cut(s) 347, 431
XspI CTAG 4 cut(s) 105, 149, 416, 579
ZrmI AGTACT 1 cut(s) 680
Zsp2I ATGCAT 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.