FvH4_5g13220

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000512
Physical Location & Seq
Reverse (-)
7464441 .. 7465660
1220 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g13220.t1

Sequence Viewer

Length: 447 bp
ATGAATTTTACTGCAGCTATCAGAGAATTGCTCCAGCTAGTTCAGAAACTGAGTCCACTTCATACTCCTCATCATGACCCAGAAGCAGTAGTCCCTGATCAAGTTCCAGGGCGCCAAAACTTAGACTGGGCTAATATAAGTGTGGCGTTTAGCTTGGCATCGGCAATTGACATAGCTCTACTATCAGTCCAAGTTCACTCCCAGCTTCCTCTAGTCTTCTACTTTCTCGACCTTGCCATCTTGCTTGCTTTTACTTGTTTCTTCACAGGCACGACAGTTCGTTCCAACTGTCCATTAGTAGCTCAGGTGCTCGAGCGATTCGGCATCTTCTTTGGCGTCAGCGCCTTCTTCATTTCCATCACTATCCCACCACCTTGGTTCTCTATCCATGCTCTCGACTTTAGTCAGAGCTCCGGTGACGAGTCCTCCATGGCGGCTGCGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.18

Weight (kDa)

5.03

Isoelectric Point (pI)

38.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 111
AciI CCGC 1 cut(s) 434
AcsI RAATTY 1 cut(s) 4
AcyI GRCGYC 2 cut(s) 112, 336
AjnI CCWGG 1 cut(s) 106
AluBI AGCT 7 cut(s) 17, 37, 153, 176, 205, 302, 411
AluI AGCT 7 cut(s) 17, 37, 153, 176, 205, 302, 411
Alw21I GWGCWC 2 cut(s) 312, 413
AlwNI CAGNNNCTG 1 cut(s) 49
Ama87I CYCGRG 1 cut(s) 311
ApeKI GCWGC 2 cut(s) 14, 437
ApoI RAATTY 1 cut(s) 4
AspLEI GCGC 2 cut(s) 114, 344
AsuHPI GGTGA 1 cut(s) 428
AvaI CYCGRG 1 cut(s) 311
BanI GGYRCC 1 cut(s) 111
BanII GRGCYC 1 cut(s) 413
BbsI GAAGAC 1 cut(s) 208
Bbv12I GWGCWC 2 cut(s) 312, 413
BbvI GCAGC 2 cut(s) 26, 424
BccI CCATC 2 cut(s) 245, 365
BciT130I CCWGG 1 cut(s) 108
BclI TGATCA 1 cut(s) 97
BfaI CTAG 2 cut(s) 38, 212
BfmI CTRYAG 1 cut(s) 12
BfoI RGCGCY 2 cut(s) 115, 345
BisI GCNGC 3 cut(s) 15, 435, 438
BlsI GCNGC 3 cut(s) 16, 436, 439
Bme1390I CCNGG 1 cut(s) 108
BmeT110I CYCGRG 1 cut(s) 311
BmiI GGNNCC 1 cut(s) 113
BmrFI CCNGG 1 cut(s) 108
BmrI ACTGGG 1 cut(s) 136
BmsI GCATC 2 cut(s) 167, 333
BmuI ACTGGG 1 cut(s) 136
BoxI GACNNNNGTC 1 cut(s) 402
BpiI GAAGAC 1 cut(s) 208
BplI GAGNNNNNCTC 2 cut(s) 15, 47
BpmI CTGGAG 1 cut(s) 17
Bpu10I CCTNAGC 1 cut(s) 303
BsaHI GRCGYC 2 cut(s) 112, 336
BsaJI CCNNGG 3 cut(s) 107, 374, 429
BsaWI WCCGGW 1 cut(s) 413
BsaXI ACNNNNNCTCC 2 cut(s) 410, 440
Bse1I ACTGG 1 cut(s) 131
BseBI CCWGG 1 cut(s) 108
BseDI CCNNGG 3 cut(s) 107, 374, 429
BseMII CTCAG 2 cut(s) 41, 317
BseNI ACTGG 1 cut(s) 131
BseRI GAGGAG 1 cut(s) 57
BseXI GCAGC 2 cut(s) 26, 424
BseYI CCCAGC 1 cut(s) 201
BshNI GGYRCC 1 cut(s) 111
BsiHKAI GWGCWC 2 cut(s) 312, 413
BsiHKCI CYCGRG 1 cut(s) 311
BsiSI CCGG 1 cut(s) 414
BslFI GGGAC 1 cut(s) 77
BsmFI GGGAC 1 cut(s) 77
BsoBI CYCGRG 1 cut(s) 311
Bsp1286I GDGCHC 2 cut(s) 312, 413
Bsp143I GATC 1 cut(s) 97
Bsp19I CCATGG 1 cut(s) 429
BspACI CCGC 1 cut(s) 434
BspCNI CTCAG 2 cut(s) 42, 316
BspHI TCATGA 1 cut(s) 73
BspLI GGNNCC 1 cut(s) 113
BspMAI CTGCAG 1 cut(s) 16
BspT107I GGYRCC 1 cut(s) 111
BsrI ACTGG 1 cut(s) 131
BssECI CCNNGG 3 cut(s) 107, 374, 429
BssMI GATC 1 cut(s) 97
BssNI GRCGYC 2 cut(s) 112, 336
BssT1I CCWWGG 2 cut(s) 374, 429
Bst2UI CCWGG 1 cut(s) 108
Bst4CI ACNGT 2 cut(s) 277, 290
BstACI GRCGYC 2 cut(s) 112, 336
BstC8I GCNNGC 1 cut(s) 246
BstDEI CTNAG 3 cut(s) 50, 121, 303
BstDSI CCRYGG 1 cut(s) 429
BstH2I RGCGCY 2 cut(s) 115, 345
BstHHI GCGC 2 cut(s) 114, 344
BstKTI GATC 1 cut(s) 100
BstMBI GATC 1 cut(s) 97
BstNI CCWGG 1 cut(s) 108
BstPAI GACNNNNGTC 1 cut(s) 402
BstSCI CCNGG 1 cut(s) 106
BstSFI CTRYAG 1 cut(s) 12
BstV1I GCAGC 2 cut(s) 26, 424
BstV2I GAAGAC 1 cut(s) 208
BstXI CCANNNNNNTGG 1 cut(s) 375
BtgI CCRYGG 1 cut(s) 429
Cac8I GCNNGC 1 cut(s) 246
CaiI CAGNNNCTG 1 cut(s) 49
CciI TCATGA 1 cut(s) 73
CfoI GCGC 2 cut(s) 114, 344
CseI GACGC 1 cut(s) 325
CviAII CATG 3 cut(s) 74, 389, 430
CviJI RGCY 9 cut(s) 17, 37, 131, 153, 176, 205, 302, 411, 437
CviKI_1 RGCY 9 cut(s) 17, 37, 131, 153, 176, 205, 302, 411, 437
DdeI CTNAG 3 cut(s) 50, 121, 303
DinI GGCGCC 1 cut(s) 113
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
Ecl136II GAGCTC 1 cut(s) 411
Eco130I CCWWGG 2 cut(s) 374, 429
Eco24I GRGCYC 1 cut(s) 413
Eco53kI GAGCTC 1 cut(s) 411
Eco88I CYCGRG 1 cut(s) 311
EcoICRI GAGCTC 1 cut(s) 411
EcoRII CCWGG 1 cut(s) 106
EcoT14I CCWWGG 2 cut(s) 374, 429
EcoT38I GRGCYC 1 cut(s) 413
EgeI GGCGCC 1 cut(s) 113
EheI GGCGCC 1 cut(s) 113
ErhI CCWWGG 2 cut(s) 374, 429
FaeI CATG 3 cut(s) 77, 392, 433
FaiI YATR 6 cut(s) 63, 75, 137, 173, 390, 431
FaqI GGGAC 1 cut(s) 77
FatI CATG 3 cut(s) 73, 388, 429
FbaI TGATCA 1 cut(s) 97
Fnu4HI GCNGC 3 cut(s) 15, 435, 438
FriOI GRGCYC 1 cut(s) 413
Fsp4HI GCNGC 3 cut(s) 15, 435, 438
FspBI CTAG 2 cut(s) 38, 212
GlaI GCGC 2 cut(s) 113, 343
GluI GCNGC 3 cut(s) 15, 435, 438
GsaI CCCAGC 1 cut(s) 205
GsuI CTGGAG 1 cut(s) 17
HaeII RGCGCY 2 cut(s) 115, 345
HapII CCGG 1 cut(s) 414
HgaI GACGC 1 cut(s) 325
HhaI GCGC 2 cut(s) 114, 344
Hin1I GRCGYC 2 cut(s) 112, 336
Hin1II CATG 3 cut(s) 77, 392, 433
Hin6I GCGC 2 cut(s) 112, 342
HinP1I GCGC 2 cut(s) 112, 342
HinfI GANTC 3 cut(s) 52, 318, 422
HpaII CCGG 1 cut(s) 414
HphI GGTGA 1 cut(s) 428
Hpy166II GTNNAC 2 cut(s) 56, 196
Hpy188I TCNGA 3 cut(s) 23, 45, 408
Hpy188III TCNNGA 3 cut(s) 74, 227, 395
Hpy8I GTNNAC 2 cut(s) 56, 196
HpyAV CCTTC 1 cut(s) 355
HpyCH4III ACNGT 2 cut(s) 277, 290
HpyCH4V TGCA 1 cut(s) 14
HpyF3I CTNAG 3 cut(s) 50, 121, 303
Hsp92I GRCGYC 2 cut(s) 112, 336
Hsp92II CATG 3 cut(s) 77, 392, 433
HspAI GCGC 2 cut(s) 112, 342
KasI GGCGCC 1 cut(s) 111
Ksp22I TGATCA 1 cut(s) 97
Kzo9I GATC 1 cut(s) 97
LmnI GCTCC 2 cut(s) 36, 416
Lsp1109I GCAGC 2 cut(s) 26, 424
LweI GCATC 2 cut(s) 167, 333
MaeI CTAG 2 cut(s) 38, 212
MaeIII GTNAC 1 cut(s) 416
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 4 cut(s) 208, 253, 319, 340
MfeI CAATTG 1 cut(s) 165
MhlI GDGCHC 2 cut(s) 312, 413
MluCI AATT 3 cut(s) 4, 26, 165
Mly113I GGCGCC 1 cut(s) 112
MlyI GAGTC 2 cut(s) 61, 431
MmeI TCCRAC 1 cut(s) 309
MnlI CCTC 3 cut(s) 78, 219, 436
MspI CCGG 1 cut(s) 414
MspR9I CCNGG 1 cut(s) 108
MunI CAATTG 1 cut(s) 165
MvaI CCWGG 1 cut(s) 108
NarI GGCGCC 1 cut(s) 112
NcoI CCATGG 1 cut(s) 429
NdeII GATC 1 cut(s) 97
NlaIII CATG 3 cut(s) 77, 392, 433
NlaIV GGNNCC 1 cut(s) 113
NmuCI GTSAC 1 cut(s) 416
PaeR7I CTCGAG 1 cut(s) 311
PagI TCATGA 1 cut(s) 73
PfeI GAWTC 1 cut(s) 318
PkrI GCNGC 3 cut(s) 16, 436, 439
PleI GAGTC 2 cut(s) 60, 430
PluTI GGCGCC 1 cut(s) 115
PpsI GAGTC 2 cut(s) 60, 430
PshAI GACNNNNGTC 1 cut(s) 402
Psp124BI GAGCTC 1 cut(s) 413
Psp6I CCWGG 1 cut(s) 106
PspFI CCCAGC 1 cut(s) 201
PspGI CCWGG 1 cut(s) 106
PspN4I GGNNCC 1 cut(s) 113
PspXI VCTCGAGB 1 cut(s) 311
PstI CTGCAG 1 cut(s) 16
PstNI CAGNNNCTG 1 cut(s) 49
SacI GAGCTC 1 cut(s) 413
SatI GCNGC 3 cut(s) 15, 435, 438
Sau3AI GATC 1 cut(s) 97
SchI GAGTC 2 cut(s) 61, 431
ScrFI CCNGG 1 cut(s) 108
SduI GDGCHC 2 cut(s) 312, 413
SfaNI GCATC 2 cut(s) 167, 333
SfcI CTRYAG 1 cut(s) 12
SfoI GGCGCC 1 cut(s) 113
Sfr274I CTCGAG 1 cut(s) 311
SlaI CTCGAG 1 cut(s) 311
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 3 cut(s) 4, 26, 165
SsiI CCGC 1 cut(s) 434
SspDI GGCGCC 1 cut(s) 111
SspMI CTAG 2 cut(s) 38, 212
SstI GAGCTC 1 cut(s) 413
StyD4I CCNGG 1 cut(s) 106
StyI CCWWGG 2 cut(s) 374, 429
TaaI ACNGT 2 cut(s) 277, 290
TaqI TCGA 3 cut(s) 228, 312, 396
TasI AATT 3 cut(s) 4, 26, 165
TauI GCSGC 1 cut(s) 437
TfiI GAWTC 1 cut(s) 318
TseFI GTSAC 1 cut(s) 416
TseI GCWGC 2 cut(s) 14, 437
Tsp45I GTSAC 1 cut(s) 416
TspDTI ATGAA 3 cut(s) 17, 50, 340
XapI RAATTY 1 cut(s) 4
XhoI CTCGAG 1 cut(s) 311
XspI CTAG 2 cut(s) 38, 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.