RLG00000005009

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000512
Physical Location & Seq
Reverse (-)
64327963 .. 64328448
486 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005009

Sequence Viewer

Length: 486 bp
ATGAGGTTTTCTACCAATGGTCTCAACACATTTGTCCGTGAAGTCATTGCAAAACTTGGTTGGGTTCCTGATCCTCCTGACGTAGAGATGGCTCAACCAGCAGCAGTGCCCAACCACCAGCTGCTAGATTACTGGGCAAAGATACTTGTTGTGCTCTGCTCTGCATCCGCCATTGAAATGGCTCTCCTCTCCGCCCAAATCCGCTCACAGCTCCCAGCAATCTTTTGCTTCCTCGGAGTCACCCTCATGCTTGCCTTCACTAGCTGCTTTGTAGGCAGATGTATTCGCTCCATGTTCAAACAAGCGGCTCAGGTGCTCGAGCGAGTCGGCATTTTCTTTGGGGTCACTGCAATCTTCATATCCATCACTATTCCATTTCCTGCTCTGTGGTTCAAGTGTGTTGCATGCTTCATCTATGCGCTCTGCTGGCTTACAATCTTGATTTGTAATTGCTTCCATTCTTACTTGCTTGGTATAACAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

17.95

Weight (kDa)

8.63

Isoelectric Point (pI)

34.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 204
AciI CCGC 4 cut(s) 168, 192, 202, 305
AclWI GGATC 1 cut(s) 65
AgsI TTSAA 3 cut(s) 176, 298, 394
AluBI AGCT 3 cut(s) 121, 211, 264
AluI AGCT 3 cut(s) 121, 211, 264
Alw21I GWGCWC 2 cut(s) 156, 318
Alw26I GTCTC 1 cut(s) 26
AlwI GGATC 1 cut(s) 65
Ama87I CYCGRG 1 cut(s) 317
ApeKI GCWGC 3 cut(s) 101, 121, 264
AspLEI GCGC 1 cut(s) 421
AsuHPI GGTGA 1 cut(s) 232
AvaI CYCGRG 1 cut(s) 317
BaeGI GKGCMC 1 cut(s) 111
Bbv12I GWGCWC 2 cut(s) 156, 318
BbvI GCAGC 3 cut(s) 108, 113, 251
BccI CCATC 2 cut(s) 82, 371
BcoDI GTCTC 1 cut(s) 26
BfaI CTAG 2 cut(s) 125, 261
BisI GCNGC 4 cut(s) 102, 122, 265, 306
BlsI GCNGC 4 cut(s) 103, 123, 266, 307
BmeT110I CYCGRG 1 cut(s) 317
BmiI GGNNCC 1 cut(s) 66
BmrI ACTGGG 1 cut(s) 142
BmsI GCATC 1 cut(s) 173
BmuI ACTGGG 1 cut(s) 142
BplI GAGNNNNNCTC 2 cut(s) 228, 260
Bpu10I CCTNAGC 1 cut(s) 309
BsaI GGTCTC 1 cut(s) 26
BsaJI CCNNGG 1 cut(s) 232
Bse1I ACTGG 1 cut(s) 137
Bse3DI GCAATG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 232
BseGI GGATG 1 cut(s) 164
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 323
BseNI ACTGG 1 cut(s) 137
BseRI GAGGAG 1 cut(s) 176
BseSI GKGCMC 1 cut(s) 111
BseXI GCAGC 3 cut(s) 108, 113, 251
BseYI CCCAGC 1 cut(s) 214
BsiHKAI GWGCWC 2 cut(s) 156, 318
BsiHKCI CYCGRG 1 cut(s) 317
BsmAI GTCTC 1 cut(s) 26
Bso31I GGTCTC 1 cut(s) 26
BsoBI CYCGRG 1 cut(s) 317
Bsp1286I GDGCHC 3 cut(s) 111, 156, 318
Bsp143I GATC 1 cut(s) 70
BspACI CCGC 4 cut(s) 168, 192, 202, 305
BspCNI CTCAG 1 cut(s) 322
BspLI GGNNCC 1 cut(s) 66
BspPI GGATC 1 cut(s) 65
BspTNI GGTCTC 1 cut(s) 26
BsrBI CCGCTC 1 cut(s) 204
BsrDI GCAATG 1 cut(s) 45
BsrI ACTGG 1 cut(s) 137
BssECI CCNNGG 1 cut(s) 232
BssMI GATC 1 cut(s) 70
BstC8I GCNNGC 3 cut(s) 252, 406, 428
BstDEI CTNAG 1 cut(s) 309
BstF5I GGATG 1 cut(s) 164
BstHHI GCGC 1 cut(s) 421
BstKTI GATC 1 cut(s) 73
BstMAI GTCTC 1 cut(s) 26
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 3 cut(s) 98, 273, 427
BstNSI RCATGY 1 cut(s) 408
BstSLI GKGCMC 1 cut(s) 111
BstV1I GCAGC 3 cut(s) 108, 113, 251
BstXI CCANNNNNNTGG 1 cut(s) 178
BtsCI GGATG 1 cut(s) 164
BtsI GCAGTG 2 cut(s) 111, 345
BtsIMutI CAGTG 2 cut(s) 111, 345
Cac8I GCNNGC 3 cut(s) 252, 406, 428
CfoI GCGC 1 cut(s) 421
CviAII CATG 3 cut(s) 247, 292, 405
CviJI RGCY 7 cut(s) 92, 121, 182, 211, 264, 308, 430
CviKI_1 RGCY 7 cut(s) 92, 121, 182, 211, 264, 308, 430
DdeI CTNAG 1 cut(s) 309
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
EciI GGCGGA 2 cut(s) 157, 181
Eco31I GGTCTC 1 cut(s) 26
Eco88I CYCGRG 1 cut(s) 317
FaeI CATG 3 cut(s) 250, 295, 408
FaiI YATR 6 cut(s) 248, 293, 359, 406, 417, 476
FatI CATG 3 cut(s) 246, 291, 404
Fnu4HI GCNGC 4 cut(s) 102, 122, 265, 306
FokI GGATG 1 cut(s) 151
Fsp4HI GCNGC 4 cut(s) 102, 122, 265, 306
FspBI CTAG 2 cut(s) 125, 261
GlaI GCGC 1 cut(s) 420
GluI GCNGC 4 cut(s) 102, 122, 265, 306
GsaI CCCAGC 1 cut(s) 218
HhaI GCGC 1 cut(s) 421
Hin1II CATG 3 cut(s) 250, 295, 408
Hin6I GCGC 1 cut(s) 419
HinP1I GCGC 1 cut(s) 419
HinfI GANTC 2 cut(s) 237, 324
HphI GGTGA 1 cut(s) 232
Hpy188I TCNGA 1 cut(s) 236
Hpy188III TCNNGA 3 cut(s) 68, 77, 439
HpyAV CCTTC 1 cut(s) 265
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 4 cut(s) 50, 164, 350, 404
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 273, 427
HpyF3I CTNAG 1 cut(s) 309
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 3 cut(s) 250, 295, 408
HspAI GCGC 1 cut(s) 419
Kzo9I GATC 1 cut(s) 70
LmnI GCTCC 2 cut(s) 216, 293
LpnPI CCDG 9 cut(s) 81, 90, 111, 118, 131, 228, 296, 393, 412
Lsp1109I GCAGC 3 cut(s) 108, 113, 251
LweI GCATC 1 cut(s) 173
MaeI CTAG 2 cut(s) 125, 261
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 2 cut(s) 238, 343
MalI GATC 1 cut(s) 72
MbiI CCGCTC 1 cut(s) 204
MboI GATC 1 cut(s) 70
MboII GAAGA 1 cut(s) 346
MhlI GDGCHC 3 cut(s) 111, 156, 318
MluCI AATT 1 cut(s) 448
MlyI GAGTC 2 cut(s) 246, 333
MnlI CCTC 4 cut(s) 84, 197, 242, 254
MslI CAYNNNNRTG 2 cut(s) 176, 245
MspA1I CMGCKG 1 cut(s) 121
MwoI GCNNNNNNNGC 3 cut(s) 98, 273, 427
NdeII GATC 1 cut(s) 70
NlaIII CATG 3 cut(s) 250, 295, 408
NlaIV GGNNCC 1 cut(s) 66
NmuCI GTSAC 2 cut(s) 238, 343
NspI RCATGY 1 cut(s) 408
PaeI GCATGC 1 cut(s) 408
PaeR7I CTCGAG 1 cut(s) 317
PkrI GCNGC 4 cut(s) 103, 123, 266, 307
PleI GAGTC 2 cut(s) 245, 332
PpsI GAGTC 2 cut(s) 245, 332
PspFI CCCAGC 1 cut(s) 214
PspN4I GGNNCC 1 cut(s) 66
PspXI VCTCGAGB 1 cut(s) 317
PvuII CAGCTG 1 cut(s) 121
RseI CAYNNNNRTG 2 cut(s) 176, 245
SatI GCNGC 4 cut(s) 102, 122, 265, 306
Sau3AI GATC 1 cut(s) 70
SchI GAGTC 2 cut(s) 246, 333
SduI GDGCHC 3 cut(s) 111, 156, 318
SetI ASST 6 cut(s) 8, 84, 123, 213, 266, 315
SfaNI GCATC 1 cut(s) 173
Sfr274I CTCGAG 1 cut(s) 317
SlaI CTCGAG 1 cut(s) 317
SmiMI CAYNNNNRTG 2 cut(s) 176, 245
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
SphI GCATGC 1 cut(s) 408
Sse9I AATT 1 cut(s) 448
SsiI CCGC 4 cut(s) 168, 192, 202, 305
SspMI CTAG 2 cut(s) 125, 261
TaiI ACGT 1 cut(s) 84
TaqI TCGA 1 cut(s) 318
TasI AATT 1 cut(s) 448
TauI GCSGC 1 cut(s) 308
TscAI CASTG 2 cut(s) 111, 352
TseFI GTSAC 2 cut(s) 238, 343
TseI GCWGC 3 cut(s) 101, 121, 264
Tsp45I GTSAC 2 cut(s) 238, 343
TspDTI ATGAA 2 cut(s) 346, 400
TspGWI ACGGA 1 cut(s) 26
TspRI CASTG 2 cut(s) 111, 352
XceI RCATGY 1 cut(s) 408
XhoI CTCGAG 1 cut(s) 317
XspI CTAG 2 cut(s) 125, 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.