Rh7AG062700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000512
Physical Location & Seq
Forward (+)
4348618 .. 4349264
647 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG062700.1

Sequence Viewer

Length: 579 bp
ATGAAGTCATCATCAGCACTCCTTTCTTCACATTCGCTTGCTTGCTTTCCTTTCTTTGTTAGTTTGTTCTTGGCTTTCCATTTTTTCTGCCACCAAATAGCTGCTAGCAAAATGAGTTTTTCTGCGGCTATTACAAAACTGCTGCAGCTAGTTCAGAAACTTAGCCCATTTCACGGTCTGCCAACTCCTCCTGACCCAGAAGCAGTGGTGCCCGATCATCAAGTACCACGGCGCCAAAACTTAGACTGGGCTATGATAATTGTCGTGTTTAGCTTGGCATCAGCAATCGACATAGCTCTCCTATCAGTCCAAGTTCACTCCCAACTTCCTATAATCTTCTACGTTCTCGAGCTTGCTATCTTGCTTGCCTATACTTGTTTCTTCACAAGCAAGTTGATTCATTCAAACTGTCCACTAGTCGCTCAGGTGCTCGAGCGATTTCGCATCTTCTTTGGCGTCAGTGCCTTCTTCATATGCATCACAGTTCCGTTTCCGGCTGTCTGGTTCAAATGCATAGCATGCTTCATCTACGCAGTCTCATGGCTTGTGATATTCTTTTGTAATTACTTCTGTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

21.61

Weight (kDa)

8.4

Isoelectric Point (pI)

44.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 208, 231
AciI CCGC 1 cut(s) 125
AcyI GRCGYC 2 cut(s) 232, 456
AfaI GTAC 1 cut(s) 225
AfiI CCNNNNNNNGG 1 cut(s) 173
AgsI TTSAA 2 cut(s) 405, 508
AhlI ACTAGT 1 cut(s) 415
AluBI AGCT 5 cut(s) 101, 148, 273, 296, 352
AluI AGCT 5 cut(s) 101, 148, 273, 296, 352
Alw21I GWGCWC 1 cut(s) 432
Alw26I GTCTC 1 cut(s) 541
Ama87I CYCGRG 2 cut(s) 347, 431
ApeKI GCWGC 3 cut(s) 101, 142, 145
AspLEI GCGC 1 cut(s) 234
AsuNHI GCTAGC 1 cut(s) 104
AvaI CYCGRG 2 cut(s) 347, 431
BaeGI GKGCMC 1 cut(s) 213
BanI GGYRCC 2 cut(s) 208, 231
Bbv12I GWGCWC 1 cut(s) 432
BbvI GCAGC 3 cut(s) 88, 129, 157
BceAI ACGGC 1 cut(s) 245
BcoDI GTCTC 1 cut(s) 541
BcuI ACTAGT 1 cut(s) 415
BfaI CTAG 3 cut(s) 105, 149, 416
BfmI CTRYAG 1 cut(s) 143
BfoI RGCGCY 1 cut(s) 235
BisI GCNGC 4 cut(s) 102, 126, 143, 146
BlsI GCNGC 4 cut(s) 103, 127, 144, 147
BmeT110I CYCGRG 2 cut(s) 347, 431
BmiI GGNNCC 2 cut(s) 210, 233
BmrI ACTGGG 1 cut(s) 256
BmsI GCATC 3 cut(s) 287, 453, 486
BmtI GCTAGC 1 cut(s) 108
BmuI ACTGGG 1 cut(s) 256
Bpu10I CCTNAGC 1 cut(s) 423
BsaHI GRCGYC 2 cut(s) 232, 456
BsaJI CCNNGG 1 cut(s) 227
Bsc4I CCNNNNNNNGG 1 cut(s) 173
Bse1I ACTGG 1 cut(s) 251
BseDI CCNNGG 1 cut(s) 227
BseLI CCNNNNNNNGG 1 cut(s) 173
BseMII CTCAG 1 cut(s) 437
BseNI ACTGG 1 cut(s) 251
BseRI GAGGAG 1 cut(s) 177
BseSI GKGCMC 1 cut(s) 213
BseXI GCAGC 3 cut(s) 88, 129, 157
BshNI GGYRCC 2 cut(s) 208, 231
BsiHKAI GWGCWC 1 cut(s) 432
BsiHKCI CYCGRG 2 cut(s) 347, 431
BsiSI CCGG 1 cut(s) 494
BslI CCNNNNNNNGG 1 cut(s) 173
BsmAI GTCTC 1 cut(s) 541
BsoBI CYCGRG 2 cut(s) 347, 431
Bsp1286I GDGCHC 2 cut(s) 213, 432
Bsp143I GATC 1 cut(s) 214
BspACI CCGC 1 cut(s) 125
BspCNI CTCAG 1 cut(s) 436
BspLI GGNNCC 2 cut(s) 210, 233
BspMAI CTGCAG 1 cut(s) 147
BspOI GCTAGC 1 cut(s) 108
BspT107I GGYRCC 2 cut(s) 208, 231
BsrI ACTGG 1 cut(s) 251
BssECI CCNNGG 1 cut(s) 227
BssMI GATC 1 cut(s) 214
BssNI GRCGYC 2 cut(s) 232, 456
Bst4CI ACNGT 3 cut(s) 176, 410, 484
BstACI GRCGYC 2 cut(s) 232, 456
BstAPI GCANNNNNTGC 1 cut(s) 519
BstC8I GCNNGC 6 cut(s) 39, 43, 106, 354, 366, 520
BstDEI CTNAG 3 cut(s) 161, 241, 423
BstDSI CCRYGG 1 cut(s) 227
BstH2I RGCGCY 1 cut(s) 235
BstHHI GCGC 1 cut(s) 234
BstKTI GATC 1 cut(s) 217
BstMAI GTCTC 1 cut(s) 541
BstMBI GATC 1 cut(s) 214
BstMWI GCNNNNNNNGC 1 cut(s) 519
BstNSI RCATGY 1 cut(s) 522
BstSFI CTRYAG 1 cut(s) 143
BstSLI GKGCMC 1 cut(s) 213
BstV1I GCAGC 3 cut(s) 88, 129, 157
BtgI CCRYGG 1 cut(s) 227
BtsI GCAGTG 1 cut(s) 210
BtsIMutI CAGTG 2 cut(s) 210, 466
Cac8I GCNNGC 6 cut(s) 39, 43, 106, 354, 366, 520
CfoI GCGC 1 cut(s) 234
CseI GACGC 1 cut(s) 445
Csp6I GTAC 1 cut(s) 224
CviAII CATG 2 cut(s) 519, 540
CviQI GTAC 1 cut(s) 224
DdeI CTNAG 3 cut(s) 161, 241, 423
DinI GGCGCC 1 cut(s) 233
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
Eco88I CYCGRG 2 cut(s) 347, 431
EcoT22I ATGCAT 2 cut(s) 479, 515
EgeI GGCGCC 1 cut(s) 233
EheI GGCGCC 1 cut(s) 233
FaeI CATG 2 cut(s) 522, 543
FaiI YATR 9 cut(s) 254, 293, 332, 372, 473, 475, 515, 520, 541
FatI CATG 2 cut(s) 518, 539
FauNDI CATATG 1 cut(s) 473
Fnu4HI GCNGC 4 cut(s) 102, 126, 143, 146
Fsp4HI GCNGC 4 cut(s) 102, 126, 143, 146
FspBI CTAG 3 cut(s) 105, 149, 416
GlaI GCGC 1 cut(s) 233
GluI GCNGC 4 cut(s) 102, 126, 143, 146
HaeII RGCGCY 1 cut(s) 235
HapII CCGG 1 cut(s) 494
HgaI GACGC 1 cut(s) 445
HhaI GCGC 1 cut(s) 234
Hin1I GRCGYC 2 cut(s) 232, 456
Hin1II CATG 2 cut(s) 522, 543
Hin6I GCGC 1 cut(s) 232
HinP1I GCGC 1 cut(s) 232
HinfI GANTC 1 cut(s) 397
HpaII CCGG 1 cut(s) 494
Hpy166II GTNNAC 2 cut(s) 316, 413
Hpy188I TCNGA 1 cut(s) 156
Hpy188III TCNNGA 2 cut(s) 191, 347
Hpy8I GTNNAC 2 cut(s) 316, 413
HpyAV CCTTC 1 cut(s) 475
HpyCH4III ACNGT 3 cut(s) 176, 410, 484
HpyCH4IV ACGT 1 cut(s) 342
HpyCH4V TGCA 3 cut(s) 145, 477, 513
HpyF10VI GCNNNNNNNGC 1 cut(s) 519
HpyF3I CTNAG 3 cut(s) 161, 241, 423
HpySE526I ACGT 1 cut(s) 342
Hsp92I GRCGYC 2 cut(s) 232, 456
Hsp92II CATG 2 cut(s) 522, 543
HspAI GCGC 1 cut(s) 232
KasI GGCGCC 1 cut(s) 231
Kzo9I GATC 1 cut(s) 214
LpnPI CCDG 6 cut(s) 204, 210, 232, 410, 487, 507
Lsp1109I GCAGC 3 cut(s) 88, 129, 157
LweI GCATC 3 cut(s) 287, 453, 486
MaeI CTAG 3 cut(s) 105, 149, 416
MaeII ACGT 1 cut(s) 342
MalI GATC 1 cut(s) 216
MboI GATC 1 cut(s) 214
MboII GAAGA 5 cut(s) 18, 328, 373, 439, 460
MhlI GDGCHC 2 cut(s) 213, 432
MluCI AATT 2 cut(s) 258, 562
Mly113I GGCGCC 1 cut(s) 232
MnlI CCTC 1 cut(s) 198
Mph1103I ATGCAT 2 cut(s) 479, 515
MseI TTAA 1 cut(s) 577
MspI CCGG 1 cut(s) 494
MwoI GCNNNNNNNGC 1 cut(s) 519
NarI GGCGCC 1 cut(s) 232
NdeI CATATG 1 cut(s) 473
NdeII GATC 1 cut(s) 214
NheI GCTAGC 1 cut(s) 104
NlaIII CATG 2 cut(s) 522, 543
NlaIV GGNNCC 2 cut(s) 210, 233
NsiI ATGCAT 2 cut(s) 479, 515
NspI RCATGY 1 cut(s) 522
PaeI GCATGC 1 cut(s) 522
PaeR7I CTCGAG 2 cut(s) 347, 431
PfeI GAWTC 1 cut(s) 397
PkrI GCNGC 4 cut(s) 103, 127, 144, 147
PluTI GGCGCC 1 cut(s) 235
PspN4I GGNNCC 2 cut(s) 210, 233
PspXI VCTCGAGB 1 cut(s) 431
PstI CTGCAG 1 cut(s) 147
RsaI GTAC 1 cut(s) 225
RsaNI GTAC 1 cut(s) 224
SaqAI TTAA 1 cut(s) 577
SatI GCNGC 4 cut(s) 102, 126, 143, 146
Sau3AI GATC 1 cut(s) 214
SduI GDGCHC 2 cut(s) 213, 432
SetI ASST 7 cut(s) 103, 150, 275, 298, 345, 354, 429
SfaNI GCATC 3 cut(s) 287, 453, 486
SfcI CTRYAG 1 cut(s) 143
SfoI GGCGCC 1 cut(s) 233
Sfr274I CTCGAG 2 cut(s) 347, 431
SlaI CTCGAG 2 cut(s) 347, 431
SmlI CTYRAG 2 cut(s) 347, 431
SmoI CTYRAG 2 cut(s) 347, 431
SpeI ACTAGT 1 cut(s) 415
SphI GCATGC 1 cut(s) 522
Sse9I AATT 2 cut(s) 258, 562
SsiI CCGC 1 cut(s) 125
SspDI GGCGCC 1 cut(s) 231
SspMI CTAG 3 cut(s) 105, 149, 416
TaaI ACNGT 3 cut(s) 176, 410, 484
TaiI ACGT 1 cut(s) 345
TaqI TCGA 3 cut(s) 288, 348, 432
TasI AATT 2 cut(s) 258, 562
TauI GCSGC 1 cut(s) 128
TfiI GAWTC 1 cut(s) 397
Tru1I TTAA 1 cut(s) 577
Tru9I TTAA 1 cut(s) 577
TscAI CASTG 2 cut(s) 210, 466
TseI GCWGC 3 cut(s) 101, 142, 145
TspDTI ATGAA 4 cut(s) 17, 389, 460, 514
TspGWI ACGGA 1 cut(s) 477
TspRI CASTG 2 cut(s) 210, 466
XceI RCATGY 1 cut(s) 522
XhoI CTCGAG 2 cut(s) 347, 431
XspI CTAG 3 cut(s) 105, 149, 416
Zsp2I ATGCAT 2 cut(s) 479, 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.