Prupe.1G109400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000512
Physical Location & Seq
Forward (+)
8735212 .. 8735634
423 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G109400.1

Sequence Viewer

Length: 423 bp
AAAATAATACTCATTGTGAGCCGTCTTGATGAGCCCGGTGACATAGAAGCTCAAGCTCCAGCAGCAGCAGCTAGGAACTTGGATTGGGCAAAGATTGTTGTGGTGTATTGCTTGTCAACCGGAGTTGCCATGGCTCTCATACACACCCAAGTTCACCCCAGCAAGCTCCCTCTAAGCTTTTTCTTTCTCGGACTGGCAGTCCTACTCGCCTTTGCGTGCATCATGGTAAGCAAATTTGTTCAGCACTCCAAATGTCCAAGAATAACACTTCATCTCTTCCATTTCTTTGGGATATTTTTCGGAGTCACCGCCTTCTTCATTTCCATTACAATCCCTTTTCCTCTCTGGTTTAAATGTACTGCATCTGTCATCTATTTGGCCTCAGGCCTTGTAGTCATATTTTGCCATCACTTCTATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.59

Weight (kDa)

8.94

Isoelectric Point (pI)

31.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 309
AcsI RAATTY 1 cut(s) 233
AfaI GTAC 1 cut(s) 358
AhdI GACNNNNNGTC 1 cut(s) 197
AluBI AGCT 5 cut(s) 50, 56, 71, 166, 177
AluI AGCT 5 cut(s) 50, 56, 71, 166, 177
AoxI GGCC 2 cut(s) 378, 385
ApeKI GCWGC 3 cut(s) 62, 65, 68
ApoI RAATTY 1 cut(s) 233
AsuC2I CCSGG 1 cut(s) 36
AsuHPI GGTGA 3 cut(s) 50, 146, 298
AxyI CCTNAGG 1 cut(s) 382
BanII GRGCYC 1 cut(s) 36
BbvI GCAGC 3 cut(s) 74, 77, 80
BccI CCATC 1 cut(s) 414
BceAI ACGGC 1 cut(s) 6
BcnI CCSGG 1 cut(s) 36
BfaI CTAG 1 cut(s) 72
BisI GCNGC 3 cut(s) 63, 66, 69
BlsI GCNGC 3 cut(s) 64, 67, 70
Bme1390I CCNGG 1 cut(s) 36
BmeRI GACNNNNNGTC 1 cut(s) 197
BmrFI CCNGG 1 cut(s) 36
BmsI GCATC 2 cut(s) 228, 371
BpmI CTGGAG 1 cut(s) 42
BpuEI CTTGAG 1 cut(s) 36
BpuMI CCSGG 1 cut(s) 36
BsaJI CCNNGG 1 cut(s) 129
BsaWI WCCGGW 1 cut(s) 119
Bse1I ACTGG 1 cut(s) 198
Bse21I CCTNAGG 1 cut(s) 382
BseDI CCNNGG 1 cut(s) 129
BseMII CTCAG 1 cut(s) 396
BseNI ACTGG 1 cut(s) 198
BseXI GCAGC 3 cut(s) 74, 77, 80
BseYI CCCAGC 1 cut(s) 158
BshFI GGCC 2 cut(s) 380, 387
BsiSI CCGG 2 cut(s) 36, 120
BsnI GGCC 2 cut(s) 380, 387
Bsp1286I GDGCHC 1 cut(s) 36
Bsp19I CCATGG 1 cut(s) 129
BspACI CCGC 1 cut(s) 309
BspANI GGCC 2 cut(s) 380, 387
BspCNI CTCAG 1 cut(s) 395
BsrI ACTGG 1 cut(s) 198
BssECI CCNNGG 1 cut(s) 129
BssT1I CCWWGG 1 cut(s) 129
Bst6I CTCTTC 1 cut(s) 281
BstC8I GCNNGC 2 cut(s) 164, 217
BstDEI CTNAG 2 cut(s) 173, 382
BstDSI CCRYGG 1 cut(s) 129
BstMWI GCNNNNNNNGC 2 cut(s) 62, 68
BstSCI CCNGG 1 cut(s) 34
BstV1I GCAGC 3 cut(s) 74, 77, 80
BstXI CCANNNNNNTGG 1 cut(s) 287
Bsu36I CCTNAGG 1 cut(s) 382
BsuRI GGCC 2 cut(s) 380, 387
BtgI CCRYGG 1 cut(s) 129
Cac8I GCNNGC 2 cut(s) 164, 217
Csp6I GTAC 1 cut(s) 357
CviAII CATG 2 cut(s) 130, 223
CviQI GTAC 1 cut(s) 357
DdeI CTNAG 2 cut(s) 173, 382
DraI TTTAAA 1 cut(s) 352
DriI GACNNNNNGTC 1 cut(s) 197
Eam1104I CTCTTC 1 cut(s) 281
Eam1105I GACNNNNNGTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 281
Eco130I CCWWGG 1 cut(s) 129
Eco147I AGGCCT 1 cut(s) 387
Eco24I GRGCYC 1 cut(s) 36
Eco81I CCTNAGG 1 cut(s) 382
EcoT14I CCWWGG 1 cut(s) 129
EcoT38I GRGCYC 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 2 cut(s) 133, 226
FaiI YATR 6 cut(s) 44, 131, 140, 224, 398, 417
FatI CATG 2 cut(s) 129, 222
Fnu4HI GCNGC 3 cut(s) 63, 66, 69
FriOI GRGCYC 1 cut(s) 36
Fsp4HI GCNGC 3 cut(s) 63, 66, 69
FspBI CTAG 1 cut(s) 72
GluI GCNGC 3 cut(s) 63, 66, 69
GsaI CCCAGC 1 cut(s) 162
GsuI CTGGAG 1 cut(s) 42
HaeIII GGCC 2 cut(s) 380, 387
HapII CCGG 2 cut(s) 36, 120
Hin1II CATG 2 cut(s) 133, 226
HincII GTYRAC 1 cut(s) 117
HindII GTYRAC 1 cut(s) 117
HindIII AAGCTT 1 cut(s) 175
HinfI GANTC 1 cut(s) 303
HpaII CCGG 2 cut(s) 36, 120
HphI GGTGA 3 cut(s) 50, 146, 298
Hpy166II GTNNAC 2 cut(s) 117, 154
Hpy188I TCNGA 2 cut(s) 191, 302
Hpy188III TCNNGA 1 cut(s) 26
Hpy8I GTNNAC 2 cut(s) 117, 154
HpyAV CCTTC 1 cut(s) 322
HpyCH4V TGCA 2 cut(s) 219, 362
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 68
HpyF3I CTNAG 2 cut(s) 173, 382
Hsp92II CATG 2 cut(s) 133, 226
LmnI GCTCC 2 cut(s) 61, 171
LpnPI CCDG 7 cut(s) 49, 72, 133, 172, 179, 331, 369
Lsp1109I GCAGC 3 cut(s) 74, 77, 80
LweI GCATC 2 cut(s) 228, 371
MaeI CTAG 1 cut(s) 72
MaeIII GTNAC 2 cut(s) 38, 304
MboII GAAGA 2 cut(s) 268, 307
MhlI GDGCHC 1 cut(s) 36
MluCI AATT 2 cut(s) 233, 418
MlyI GAGTC 1 cut(s) 312
MnlI CCTC 3 cut(s) 180, 351, 391
MseI TTAA 2 cut(s) 351, 421
MspI CCGG 2 cut(s) 36, 120
MspR9I CCNGG 1 cut(s) 36
MwoI GCNNNNNNNGC 2 cut(s) 62, 68
NciI CCSGG 1 cut(s) 36
NcoI CCATGG 1 cut(s) 129
NlaIII CATG 2 cut(s) 133, 226
NmuCI GTSAC 2 cut(s) 38, 304
PceI AGGCCT 1 cut(s) 387
PkrI GCNGC 3 cut(s) 64, 67, 70
PleI GAGTC 1 cut(s) 311
PpsI GAGTC 1 cut(s) 311
PspFI CCCAGC 1 cut(s) 158
RsaI GTAC 1 cut(s) 358
RsaNI GTAC 1 cut(s) 357
SaqAI TTAA 2 cut(s) 351, 421
SatI GCNGC 3 cut(s) 63, 66, 69
SchI GAGTC 1 cut(s) 312
ScrFI CCNGG 1 cut(s) 36
SduI GDGCHC 1 cut(s) 36
SetI ASST 5 cut(s) 52, 58, 73, 168, 179
SfaNI GCATC 2 cut(s) 228, 371
SmlI CTYRAG 1 cut(s) 51
SmoI CTYRAG 1 cut(s) 51
Sse9I AATT 2 cut(s) 233, 418
SseBI AGGCCT 1 cut(s) 387
SsiI CCGC 1 cut(s) 309
SspMI CTAG 1 cut(s) 72
StuI AGGCCT 1 cut(s) 387
StyD4I CCNGG 1 cut(s) 34
StyI CCWWGG 1 cut(s) 129
TasI AATT 2 cut(s) 233, 418
TatI WGTACW 1 cut(s) 356
Tru1I TTAA 2 cut(s) 351, 421
Tru9I TTAA 2 cut(s) 351, 421
TseFI GTSAC 2 cut(s) 38, 304
TseI GCWGC 3 cut(s) 62, 65, 68
Tsp45I GTSAC 2 cut(s) 38, 304
TspDTI ATGAA 2 cut(s) 260, 307
XapI RAATTY 1 cut(s) 233
XspI CTAG 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.