Rorug01G0382000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000512
Physical Location & Seq
Forward (+)
49439086 .. 49440638
1553 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0382000.1

Sequence Viewer

Length: 1368 bp
ATGGAGCAACTTAAGAAGGGTCGGAGATTGATACTATTCCCACTGCCCTTTCAAGGCCATATAAATCCCATGCTTGAGCTGGCCAATATTTTACACTCGAAAGGCTTCTCGATAACCATAATCCAAAGCAACTTCAACTCTCTCAACCCTTCAAGCCATCCCCACTTCATCTTCCACTCAATAGATATTGGCTTGTCTGAAAGCGGAACCTCAACAAAGGATCCGCTCCTTCTTCTTTCTCGTCTAAATGCAAATTCTCGTGAACCTTTCCAGGAATGTTTGGCTACGTTGTTGTCTGATGTTTCGAAGGAGCCTGTTGGTTGCTTAATCACCGACTCCGTCTATGACTTCGCTCAATCTGTTGCAGAGAGCCTAAAGCTGCCAAGGATTCTGTTAAGGACTGGGAGTGCCTCTTCATTTGCAATTTATACTGCATTTCCACTTCTTCGAGAGAAAGGCTACCTCCCAAAACAAGATTCTCGACTAGAAGAGGAAGTGACAGAGCTTTCACCTCTCAAGGTTAAAGACATTCCAATTATCAACAGTGATGGTCCAGAGAGATTTTTTAATCTAATAGCTGACCTGGAAATTCAAACCAAGACCTCAGATGGATTGATTCTTAATACTTTTGAAGACCTTGAAGAACATGCACTGGCCACAATTCGCCAGGTTTATCCTATTCCAGTTTTCTCACTAGGACCATTTCACAAATGCTACCCTGCAAACTCTTCTCTAACTTCAAGTAGCTTATTAGCACAAGACCAGAGTTGCATTTCATGGCTAAACACACAAGCACCAAAATCTGTTATTTATGTTAGTTTTGGGAGCATTGCAGCAATAAAGGAAACTCAGTTTTTGGAGATAGCCTGGGGACTAGCCAACAGCAAGCAGCCCTTCTTGTGGGTTGTTCGACCCGGATTAGTCCATGGGTCAGATTGGCTTGAAGCATTACCTAGTGGGTTTCTTGAGACCTTGAATGTTAAGGGGCACATTGTTAAATGGGCACCTCAAAAAGAAGTGCTTGCCCATCAAGCGGTTGGTGTGTTTTGGACTCACAATGGCTGGAATTCTACATTGGAGAGTATCTGCGAGGGGGTACCTATGATTTGTATGCCATGTTCTTCTGATCAAATGATGAATGCAAGATATGTAAGCGATGTTTGGAAGGTCGGGTTGCAGTTACAACATGGGGTCGAGAGAGTCAACATTGAAAACACCATTAGAAGACTAATGGTGGAGAAAGAAGGGGAAGAGATCAAAAACAGAGTTTTAAGGCTAATGCAGAAGGCAAATTTTTGCCTCAAACAAGGTGGCTCATCATACCGATCCTTAGATGCCTTGATCAAACACATTTTATCATTTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

455

Amino Acids

50.92

Weight (kDa)

6.51

Isoelectric Point (pI)

50.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 102 - 414 4.2e-30 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1096
AccB1I GGYRCC 2 cut(s) 1003, 1096
AccBSI CCGCTC 1 cut(s) 226
AciI CCGC 3 cut(s) 204, 224, 1034
AclWI GGATC 3 cut(s) 215, 228, 1320
AcoI YGGCCR 2 cut(s) 81, 654
AcsI RAATTY 4 cut(s) 253, 588, 1066, 1291
AfaI GTAC 1 cut(s) 1098
AfiI CCNNNNNNNGG 3 cut(s) 53, 900, 1033
AflII CTTAAG 1 cut(s) 11
AjnI CCWGG 4 cut(s) 270, 582, 666, 866
AjuI GAANNNNNNNTTGG 4 cut(s) 460, 492, 1058, 1090
AluBI AGCT 5 cut(s) 79, 379, 505, 578, 747
AluI AGCT 5 cut(s) 79, 379, 505, 578, 747
Alw26I GTCTC 1 cut(s) 962
AlwI GGATC 3 cut(s) 215, 228, 1320
AoxI GGCC 3 cut(s) 55, 81, 654
ApeKI GCWGC 3 cut(s) 379, 833, 889
ApoI RAATTY 4 cut(s) 253, 588, 1066, 1291
Asp700I GAANNNNTTC 1 cut(s) 104
Asp718I GGTACC 1 cut(s) 1096
AspS9I GGNCC 2 cut(s) 551, 698
AsuC2I CCSGG 1 cut(s) 915
AsuHPI GGTGA 2 cut(s) 322, 501
AsuII TTCGAA 1 cut(s) 305
AvaII GGWCC 2 cut(s) 551, 698
BaeGI GKGCMC 2 cut(s) 990, 1006
BalI TGGCCA 2 cut(s) 83, 656
BamHI GGATCC 1 cut(s) 220
BanI GGYRCC 2 cut(s) 1003, 1096
BauI CACGAG 1 cut(s) 258
BbsI GAAGAC 2 cut(s) 639, 1231
BbvI GCAGC 3 cut(s) 366, 845, 901
BccI CCATC 4 cut(s) 165, 542, 602, 1035
BciT130I CCWGG 4 cut(s) 272, 584, 668, 868
BclI TGATCA 2 cut(s) 1126, 1341
BcnI CCSGG 1 cut(s) 915
BcoDI GTCTC 1 cut(s) 962
BfaI CTAG 4 cut(s) 485, 695, 875, 954
BfrI CTTAAG 1 cut(s) 11
BisI GCNGC 3 cut(s) 380, 834, 890
BlsI GCNGC 3 cut(s) 381, 835, 891
Bme1390I CCNGG 5 cut(s) 272, 584, 668, 868, 915
Bme18I GGWCC 2 cut(s) 551, 698
BmgT120I GGNCC 2 cut(s) 551, 698
BmiI GGNNCC 5 cut(s) 208, 222, 312, 1005, 1098
BmrFI CCNGG 5 cut(s) 272, 584, 668, 868, 915
BmrI ACTGGG 1 cut(s) 411
BmsI GCATC 1 cut(s) 1324
BmuI ACTGGG 1 cut(s) 411
BpiI GAAGAC 2 cut(s) 639, 1231
Bpu14I TTCGAA 1 cut(s) 305
BpuEI CTTGAG 3 cut(s) 95, 500, 986
BpuMI CCSGG 1 cut(s) 915
BsaI GGTCTC 1 cut(s) 962
BsaJI CCNNGG 3 cut(s) 383, 867, 925
Bsc4I CCNNNNNNNGG 3 cut(s) 53, 900, 1033
Bse1I ACTGG 3 cut(s) 406, 657, 683
Bse3DI GCAATG 1 cut(s) 828
BseBI CCWGG 4 cut(s) 272, 584, 668, 868
BseDI CCNNGG 3 cut(s) 383, 867, 925
BseGI GGATG 1 cut(s) 157
BseLI CCNNNNNNNGG 3 cut(s) 53, 900, 1033
BseMI GCAATG 1 cut(s) 828
BseMII CTCAG 2 cut(s) 618, 863
BseNI ACTGG 3 cut(s) 406, 657, 683
BseSI GKGCMC 2 cut(s) 990, 1006
BseXI GCAGC 3 cut(s) 366, 845, 901
BshFI GGCC 3 cut(s) 57, 83, 656
BshNI GGYRCC 2 cut(s) 1003, 1096
BsiSI CCGG 1 cut(s) 915
BslFI GGGAC 1 cut(s) 885
BslI CCNNNNNNNGG 3 cut(s) 53, 900, 1033
BsmAI GTCTC 1 cut(s) 962
BsmFI GGGAC 1 cut(s) 885
BsmI GAATGC 1 cut(s) 1144
BsnI GGCC 3 cut(s) 57, 83, 656
Bso31I GGTCTC 1 cut(s) 962
Bsp119I TTCGAA 1 cut(s) 305
Bsp1286I GDGCHC 2 cut(s) 990, 1006
Bsp143I GATC 5 cut(s) 220, 1126, 1254, 1325, 1341
Bsp19I CCATGG 1 cut(s) 925
BspACI CCGC 3 cut(s) 204, 224, 1034
BspANI GGCC 3 cut(s) 57, 83, 656
BspCNI CTCAG 2 cut(s) 617, 862
BspLI GGNNCC 5 cut(s) 208, 222, 312, 1005, 1098
BspPI GGATC 3 cut(s) 215, 228, 1320
BspT104I TTCGAA 1 cut(s) 305
BspT107I GGYRCC 2 cut(s) 1003, 1096
BspTI CTTAAG 1 cut(s) 11
BspTNI GGTCTC 1 cut(s) 962
BsrBI CCGCTC 1 cut(s) 226
BsrDI GCAATG 1 cut(s) 828
BsrI ACTGG 3 cut(s) 406, 657, 683
BssECI CCNNGG 3 cut(s) 383, 867, 925
BssMI GATC 5 cut(s) 220, 1126, 1254, 1325, 1341
BssSI CACGAG 1 cut(s) 258
BssT1I CCWWGG 2 cut(s) 383, 925
Bst2BI CACGAG 1 cut(s) 258
Bst2UI CCWGG 4 cut(s) 272, 584, 668, 868
Bst4CI ACNGT 1 cut(s) 545
Bst6I CTCTTC 4 cut(s) 418, 483, 733, 1245
BstAFI CTTAAG 1 cut(s) 11
BstBI TTCGAA 1 cut(s) 305
BstC8I GCNNGC 3 cut(s) 81, 887, 1023
BstDEI CTNAG 3 cut(s) 604, 849, 1330
BstDSI CCRYGG 1 cut(s) 925
BstF5I GGATG 1 cut(s) 157
BstKTI GATC 5 cut(s) 223, 1129, 1257, 1328, 1344
BstMAI GTCTC 1 cut(s) 962
BstMBI GATC 5 cut(s) 220, 1126, 1254, 1325, 1341
BstMWI GCNNNNNNNGC 1 cut(s) 1031
BstNI CCWGG 4 cut(s) 272, 584, 668, 868
BstNSI RCATGY 1 cut(s) 650
BstSCI CCNGG 5 cut(s) 270, 582, 666, 866, 913
BstSLI GKGCMC 2 cut(s) 990, 1006
BstV1I GCAGC 3 cut(s) 366, 845, 901
BstV2I GAAGAC 2 cut(s) 639, 1231
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BsuRI GGCC 3 cut(s) 57, 83, 656
BtgI CCRYGG 1 cut(s) 925
BtgZI GCGATG 1 cut(s) 1170
BtsCI GGATG 1 cut(s) 157
BtsI GCAGTG 1 cut(s) 41
BtsIMutI CAGTG 3 cut(s) 41, 550, 650
Cac8I GCNNGC 3 cut(s) 81, 887, 1023
Cfr13I GGNCC 2 cut(s) 551, 698
Csp6I GTAC 1 cut(s) 1097
CspCI CAANNNNNGTGG 2 cut(s) 1291, 1326
CviAII CATG 6 cut(s) 70, 647, 777, 926, 1116, 1187
CviQI GTAC 1 cut(s) 1097
DdeI CTNAG 3 cut(s) 604, 849, 1330
DpnI GATC 5 cut(s) 222, 1128, 1256, 1327, 1343
DpnII GATC 5 cut(s) 220, 1126, 1254, 1325, 1341
DraI TTTAAA 1 cut(s) 1363
EaeI YGGCCR 2 cut(s) 81, 654
Eam1104I CTCTTC 4 cut(s) 418, 483, 733, 1245
EarI CTCTTC 4 cut(s) 418, 483, 733, 1245
Eco130I CCWWGG 2 cut(s) 383, 925
Eco31I GGTCTC 1 cut(s) 962
Eco47I GGWCC 2 cut(s) 551, 698
EcoRI GAATTC 1 cut(s) 1066
EcoRII CCWGG 4 cut(s) 270, 582, 666, 866
EcoT14I CCWWGG 2 cut(s) 383, 925
ErhI CCWWGG 2 cut(s) 383, 925
FaeI CATG 6 cut(s) 73, 650, 780, 929, 1119, 1190
FalI AAGNNNNNCTT 4 cut(s) 878, 910, 1005, 1037
FaqI GGGAC 1 cut(s) 885
FatI CATG 6 cut(s) 69, 646, 776, 925, 1115, 1186
FbaI TGATCA 2 cut(s) 1126, 1341
Fnu4HI GCNGC 3 cut(s) 380, 834, 890
FokI GGATG 1 cut(s) 144
Fsp4HI GCNGC 3 cut(s) 380, 834, 890
FspBI CTAG 4 cut(s) 485, 695, 875, 954
GluI GCNGC 3 cut(s) 380, 834, 890
HaeIII GGCC 3 cut(s) 57, 83, 656
HapII CCGG 1 cut(s) 915
Hin1II CATG 6 cut(s) 73, 650, 780, 929, 1119, 1190
HincII GTYRAC 1 cut(s) 1204
HindII GTYRAC 1 cut(s) 1204
HinfI GANTC 6 cut(s) 335, 388, 476, 616, 1051, 1200
HpaII CCGG 1 cut(s) 915
HphI GGTGA 2 cut(s) 322, 501
Hpy166II GTNNAC 2 cut(s) 263, 1204
Hpy188I TCNGA 6 cut(s) 24, 199, 298, 607, 934, 1126
Hpy188III TCNNGA 7 cut(s) 109, 260, 449, 480, 554, 965, 1195
Hpy8I GTNNAC 2 cut(s) 263, 1204
HpyAV CCTTC 8 cut(s) 10, 159, 239, 301, 904, 1159, 1238, 1279
HpyCH4III ACNGT 1 cut(s) 545
HpyCH4IV ACGT 1 cut(s) 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 1031
HpyF3I CTNAG 3 cut(s) 604, 849, 1330
HpySE526I ACGT 1 cut(s) 287
Hsp92II CATG 6 cut(s) 73, 650, 780, 929, 1119, 1190
KpnI GGTACC 1 cut(s) 1100
Ksp22I TGATCA 2 cut(s) 1126, 1341
Kzo9I GATC 5 cut(s) 220, 1126, 1254, 1325, 1341
LmnI GCTCC 4 cut(s) 4, 231, 310, 825
Lsp1109I GCAGC 3 cut(s) 366, 845, 901
LweI GCATC 1 cut(s) 1324
MaeI CTAG 4 cut(s) 485, 695, 875, 954
MaeII ACGT 1 cut(s) 287
MaeIII GTNAC 2 cut(s) 496, 1179
MalI GATC 5 cut(s) 222, 1128, 1256, 1327, 1343
MbiI CCGCTC 1 cut(s) 226
MboI GATC 5 cut(s) 220, 1126, 1254, 1325, 1341
MflI RGATCY 1 cut(s) 220
MhlI GDGCHC 2 cut(s) 990, 1006
MlsI TGGCCA 2 cut(s) 83, 656
MluCI AATT 7 cut(s) 253, 423, 534, 588, 660, 1066, 1291
MluNI TGGCCA 2 cut(s) 83, 656
MlyI GAGTC 3 cut(s) 329, 1045, 1209
MnlI CCTC 9 cut(s) 220, 421, 473, 484, 522, 613, 1017, 1084, 1310
Mox20I TGGCCA 2 cut(s) 83, 656
MroXI GAANNNNTTC 1 cut(s) 104
MscI TGGCCA 2 cut(s) 83, 656
MslI CAYNNNNRTG 1 cut(s) 1363
Msp20I TGGCCA 2 cut(s) 83, 656
MspCI CTTAAG 1 cut(s) 11
MspI CCGG 1 cut(s) 915
MspR9I CCNGG 5 cut(s) 272, 584, 668, 868, 915
Mva1269I GAATGC 1 cut(s) 1144
MvaI CCWGG 4 cut(s) 272, 584, 668, 868
MwoI GCNNNNNNNGC 1 cut(s) 1031
NciI CCSGG 1 cut(s) 915
NcoI CCATGG 1 cut(s) 925
NdeII GATC 5 cut(s) 220, 1126, 1254, 1325, 1341
NlaIII CATG 6 cut(s) 73, 650, 780, 929, 1119, 1190
NlaIV GGNNCC 5 cut(s) 208, 222, 312, 1005, 1098
NmuCI GTSAC 1 cut(s) 496
NspI RCATGY 1 cut(s) 650
NspV TTCGAA 1 cut(s) 305
PctI GAATGC 1 cut(s) 1144
PdmI GAANNNNTTC 1 cut(s) 104
PfeI GAWTC 3 cut(s) 388, 476, 616
PflFI GACNNNGTC 1 cut(s) 338
PfoI TCCNGGA 1 cut(s) 270
PkrI GCNGC 3 cut(s) 381, 835, 891
PleI GAGTC 3 cut(s) 329, 1045, 1208
PpsI GAGTC 3 cut(s) 329, 1045, 1208
Psp6I CCWGG 4 cut(s) 270, 582, 666, 866
PspGI CCWGG 4 cut(s) 270, 582, 666, 866
PspN4I GGNNCC 5 cut(s) 208, 222, 312, 1005, 1098
PspPI GGNCC 2 cut(s) 551, 698
PsrI GAACNNNNNNTAC 2 cut(s) 1102, 1134
PsuI RGATCY 1 cut(s) 220
PsyI GACNNNGTC 1 cut(s) 338
RsaI GTAC 1 cut(s) 1098
RsaNI GTAC 1 cut(s) 1097
RseI CAYNNNNRTG 1 cut(s) 1363
SatI GCNGC 3 cut(s) 380, 834, 890
Sau3AI GATC 5 cut(s) 220, 1126, 1254, 1325, 1341
Sau96I GGNCC 2 cut(s) 551, 698
SchI GAGTC 3 cut(s) 329, 1045, 1209
ScrFI CCNGG 5 cut(s) 272, 584, 668, 868, 915
SduI GDGCHC 2 cut(s) 990, 1006
SfaNI GCATC 1 cut(s) 1324
SfuI TTCGAA 1 cut(s) 305
SinI GGWCC 2 cut(s) 551, 698
SmiI ATTTAAAT 1 cut(s) 1363
SmiMI CAYNNNNRTG 1 cut(s) 1363
SmlI CTYRAG 4 cut(s) 11, 74, 515, 965
SmoI CTYRAG 4 cut(s) 11, 74, 515, 965
Sse9I AATT 7 cut(s) 253, 423, 534, 588, 660, 1066, 1291
SsiI CCGC 3 cut(s) 204, 224, 1034
SspI AATATT 1 cut(s) 88
SspMI CTAG 4 cut(s) 485, 695, 875, 954
StyD4I CCNGG 5 cut(s) 270, 582, 666, 866, 913
StyI CCWWGG 2 cut(s) 383, 925
SwaI ATTTAAAT 1 cut(s) 1363
TaaI ACNGT 1 cut(s) 545
TaiI ACGT 1 cut(s) 290
TaqI TCGA 7 cut(s) 98, 110, 305, 448, 481, 910, 1194
TasI AATT 7 cut(s) 253, 423, 534, 588, 660, 1066, 1291
TfiI GAWTC 3 cut(s) 388, 476, 616
TscAI CASTG 3 cut(s) 48, 550, 657
TseFI GTSAC 1 cut(s) 496
TseI GCWGC 3 cut(s) 379, 833, 889
Tsp45I GTSAC 1 cut(s) 496
TspDTI ATGAA 4 cut(s) 157, 405, 765, 1151
TspGWI ACGGA 1 cut(s) 328
TspRI CASTG 3 cut(s) 48, 550, 657
Tth111I GACNNNGTC 1 cut(s) 338
Vha464I CTTAAG 1 cut(s) 11
VpaK11BI GGWCC 2 cut(s) 551, 698
XapI RAATTY 4 cut(s) 253, 588, 1066, 1291
XceI RCATGY 1 cut(s) 650
XcmI CCANNNNNNNNNTGG 2 cut(s) 76, 1034
XmnI GAANNNNTTC 1 cut(s) 104
XspI CTAG 4 cut(s) 485, 695, 875, 954
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.