Rmu_sc0004821.1_g000003

Cytochrome b-c1 complex, subunit

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004821.1
Physical Location & Seq
Reverse (-)
9877 .. 14626
4750 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004821.1_g000003.1.cds

Sequence Viewer

Length: 735 bp
atgaggttctctaccaatggtctcaaaacatttctccggggagtcattgcaaaacttggtcgggttcctgatcctcgtgacgtagaaatggctcaaccaacggacgtagaaatgggtcaaccaccggcagcagaagagcccaaaggccccaaacaacccaacgaccacctgctacattattgggcaaatatacttgctctgttctgctcggcatccgccatcgaaatggctctcctctccgcccaaatccgctcacagctccctgcaatcttttgcttcctcggattcaccataatacttgcctttacttgcttctttgttggcagatgtattcgctccatgttcgaacaagcggctcagtggggttatggaatgggaggtgggagacggtccagatcagattggagatcagaaagaaaaggaaaagaaaaagaggcagagacttgtttcatatcgctatggcttcaacacctcgaagaaccagtggaggccctcttcgaagggctctacagagtcatcatgcgctgcaactctgtctacgtcaccttcgtcatccccggtgctttcctcggtgaacgggctgtggattatggagttcataggctgtgggagtacagtaacattgggcaccaggctttgaagatgagccttggagtgttcactgccttcagcattggtgtggctgttccagtatatgctgtcatattccaacagaagaaaacagcctctggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

244

Amino Acids

27.32

Weight (kDa)

8.74

Isoelectric Point (pI)

48.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 177
Acc36I ACCTGC 1 cut(s) 177
AccB1I GGYRCC 1 cut(s) 627
AccBSI CCGCTC 1 cut(s) 252
AccI GTMKAC 1 cut(s) 537
AciI CCGC 4 cut(s) 216, 240, 250, 353
AclWI GGATC 1 cut(s) 65
AcuI CTGAAG 1 cut(s) 652
AfaI GTAC 1 cut(s) 614
AgsI TTSAA 2 cut(s) 467, 640
AjnI CCWGG 1 cut(s) 630
AluBI AGCT 1 cut(s) 259
AluI AGCT 1 cut(s) 259
Alw26I GTCTC 3 cut(s) 26, 379, 434
AlwI GGATC 1 cut(s) 65
AlwNI CAGNNNCTG 1 cut(s) 728
AoxI GGCC 2 cut(s) 145, 489
ApeKI GCWGC 2 cut(s) 128, 525
AspLEI GCGC 1 cut(s) 525
AspS9I GGNCC 3 cut(s) 146, 390, 490
AsuC2I CCSGG 2 cut(s) 38, 558
AsuHPI GGTGA 3 cut(s) 280, 535, 584
AsuII TTCGAA 2 cut(s) 345, 498
AvaII GGWCC 1 cut(s) 390
BaeGI GKGCMC 1 cut(s) 630
BanI GGYRCC 1 cut(s) 627
BanII GRGCYC 2 cut(s) 141, 507
BauI CACGAG 1 cut(s) 75
BbvI GCAGC 2 cut(s) 140, 512
BccI CCATC 1 cut(s) 227
BciT130I CCWGG 1 cut(s) 632
BcnI CCSGG 2 cut(s) 38, 558
BcoDI GTCTC 3 cut(s) 26, 379, 434
BfmI CTRYAG 1 cut(s) 508
BfuAI ACCTGC 1 cut(s) 177
BisI GCNGC 3 cut(s) 129, 354, 526
BlsI GCNGC 3 cut(s) 130, 355, 527
Bme1390I CCNGG 3 cut(s) 38, 558, 632
Bme18I GGWCC 1 cut(s) 390
BmgT120I GGNCC 3 cut(s) 146, 390, 490
BmiI GGNNCC 3 cut(s) 66, 148, 629
BmrFI CCNGG 3 cut(s) 38, 558, 632
BmsI GCATC 1 cut(s) 221
Bpu14I TTCGAA 2 cut(s) 345, 498
BpuMI CCSGG 2 cut(s) 38, 558
BsaI GGTCTC 1 cut(s) 26
BsaJI CCNNGG 5 cut(s) 37, 280, 556, 568, 649
Bse118I RCCGGY 1 cut(s) 124
Bse1I ACTGG 2 cut(s) 482, 689
Bse3DI GCAATG 1 cut(s) 45
BseBI CCWGG 1 cut(s) 632
BseDI CCNNGG 5 cut(s) 37, 280, 556, 568, 649
BseGI GGATG 2 cut(s) 212, 552
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 371
BseNI ACTGG 2 cut(s) 482, 689
BseRI GAGGAG 1 cut(s) 224
BseSI GKGCMC 1 cut(s) 630
BseXI GCAGC 2 cut(s) 140, 512
BshFI GGCC 2 cut(s) 147, 491
BshNI GGYRCC 1 cut(s) 627
BsiSI CCGG 3 cut(s) 37, 125, 558
BsmAI GTCTC 3 cut(s) 26, 379, 434
BsmBI CGTCTC 1 cut(s) 379
BsnI GGCC 2 cut(s) 147, 491
Bso31I GGTCTC 1 cut(s) 26
Bsp119I TTCGAA 2 cut(s) 345, 498
Bsp1286I GDGCHC 3 cut(s) 141, 507, 630
Bsp143I GATC 3 cut(s) 70, 395, 407
BspACI CCGC 4 cut(s) 216, 240, 250, 353
BspANI GGCC 2 cut(s) 147, 491
BspCNI CTCAG 1 cut(s) 370
BspLI GGNNCC 3 cut(s) 66, 148, 629
BspMI ACCTGC 1 cut(s) 177
BspPI GGATC 1 cut(s) 65
BspQI GCTCTTC 1 cut(s) 129
BspT104I TTCGAA 2 cut(s) 345, 498
BspT107I GGYRCC 1 cut(s) 627
BspTNI GGTCTC 1 cut(s) 26
BsrBI CCGCTC 1 cut(s) 252
BsrDI GCAATG 1 cut(s) 45
BsrFI RCCGGY 1 cut(s) 124
BsrI ACTGG 2 cut(s) 482, 689
BssAI RCCGGY 1 cut(s) 124
BssECI CCNNGG 5 cut(s) 37, 280, 556, 568, 649
BssMI GATC 3 cut(s) 70, 395, 407
BssSI CACGAG 1 cut(s) 75
BssT1I CCWWGG 1 cut(s) 649
Bst2BI CACGAG 1 cut(s) 75
Bst2UI CCWGG 1 cut(s) 632
Bst4CI ACNGT 2 cut(s) 390, 617
Bst6I CTCTTC 2 cut(s) 129, 500
BstBI TTCGAA 2 cut(s) 345, 498
BstDEI CTNAG 1 cut(s) 357
BstF5I GGATG 2 cut(s) 212, 552
BstHHI GCGC 1 cut(s) 525
BstKTI GATC 3 cut(s) 73, 398, 410
BstMAI GTCTC 3 cut(s) 26, 379, 434
BstMBI GATC 3 cut(s) 70, 395, 407
BstNI CCWGG 1 cut(s) 632
BstSCI CCNGG 3 cut(s) 36, 556, 630
BstSFI CTRYAG 1 cut(s) 508
BstSLI GKGCMC 1 cut(s) 630
BstV1I GCAGC 2 cut(s) 140, 512
BstXI CCANNNNNNTGG 1 cut(s) 226
BsuRI GGCC 2 cut(s) 147, 491
BtsCI GGATG 2 cut(s) 212, 552
BtsI GCAGTG 1 cut(s) 660
BtsIMutI CAGTG 3 cut(s) 365, 489, 660
BveI ACCTGC 1 cut(s) 177
CaiI CAGNNNCTG 1 cut(s) 728
CfoI GCGC 1 cut(s) 525
Cfr10I RCCGGY 1 cut(s) 124
Cfr13I GGNCC 3 cut(s) 146, 390, 490
Csp6I GTAC 1 cut(s) 613
CviAII CATG 2 cut(s) 340, 520
CviQI GTAC 1 cut(s) 613
DdeI CTNAG 1 cut(s) 357
DpnI GATC 3 cut(s) 72, 397, 409
DpnII GATC 3 cut(s) 70, 395, 407
Eam1104I CTCTTC 2 cut(s) 129, 500
EarI CTCTTC 2 cut(s) 129, 500
EciI GGCGGA 2 cut(s) 205, 229
Eco130I CCWWGG 1 cut(s) 649
Eco24I GRGCYC 2 cut(s) 141, 507
Eco31I GGTCTC 1 cut(s) 26
Eco47I GGWCC 1 cut(s) 390
Eco57I CTGAAG 1 cut(s) 652
EcoO109I RGGNCCY 2 cut(s) 146, 490
EcoRII CCWGG 1 cut(s) 630
EcoT14I CCWWGG 1 cut(s) 649
EcoT38I GRGCYC 2 cut(s) 141, 507
ErhI CCWWGG 1 cut(s) 649
Esp3I CGTCTC 1 cut(s) 379
FaeI CATG 2 cut(s) 343, 523
FatI CATG 2 cut(s) 339, 519
FblI GTMKAC 1 cut(s) 537
Fnu4HI GCNGC 3 cut(s) 129, 354, 526
FokI GGATG 2 cut(s) 199, 539
FriOI GRGCYC 2 cut(s) 141, 507
Fsp4HI GCNGC 3 cut(s) 129, 354, 526
GlaI GCGC 1 cut(s) 524
GluI GCNGC 3 cut(s) 129, 354, 526
HaeIII GGCC 2 cut(s) 147, 491
HapII CCGG 3 cut(s) 37, 125, 558
HhaI GCGC 1 cut(s) 525
Hin1II CATG 2 cut(s) 343, 523
Hin6I GCGC 1 cut(s) 523
HinP1I GCGC 1 cut(s) 523
HincII GTYRAC 1 cut(s) 119
HindII GTYRAC 1 cut(s) 119
HinfI GANTC 3 cut(s) 42, 285, 513
HpaII CCGG 3 cut(s) 37, 125, 558
HphI GGTGA 3 cut(s) 280, 535, 584
Hpy166II GTNNAC 4 cut(s) 119, 538, 575, 660
Hpy188I TCNGA 3 cut(s) 284, 400, 412
Hpy188III TCNNGA 3 cut(s) 68, 77, 393
Hpy8I GTNNAC 4 cut(s) 119, 538, 575, 660
HpyAV CCTTC 3 cut(s) 494, 556, 676
HpyCH4III ACNGT 2 cut(s) 390, 617
HpyCH4IV ACGT 3 cut(s) 81, 105, 540
HpyCH4V TGCA 3 cut(s) 50, 266, 528
HpyF3I CTNAG 1 cut(s) 357
HpySE526I ACGT 3 cut(s) 81, 105, 540
Hsp92II CATG 2 cut(s) 343, 523
HspAI GCGC 1 cut(s) 523
Kzo9I GATC 3 cut(s) 70, 395, 407
LguI GCTCTTC 1 cut(s) 129
LmnI GCTCC 2 cut(s) 264, 341
Lsp1109I GCAGC 2 cut(s) 140, 512
LweI GCATC 1 cut(s) 221
MaeII ACGT 3 cut(s) 81, 105, 540
MaeIII GTNAC 3 cut(s) 77, 541, 617
MalI GATC 3 cut(s) 72, 397, 409
MbiI CCGCTC 1 cut(s) 252
MboI GATC 3 cut(s) 70, 395, 407
MboII GAAGA 5 cut(s) 146, 487, 488, 652, 727
MhlI GDGCHC 3 cut(s) 141, 507, 630
MlyI GAGTC 2 cut(s) 51, 522
MmeI TCCRAC 1 cut(s) 733
MnlI CCTC 9 cut(s) 84, 245, 290, 371, 427, 481, 482, 503, 578
MslI CAYNNNNRTG 2 cut(s) 224, 677
MspI CCGG 3 cut(s) 37, 125, 558
MspR9I CCNGG 3 cut(s) 38, 558, 632
MvaI CCWGG 1 cut(s) 632
NciI CCSGG 2 cut(s) 38, 558
NdeII GATC 3 cut(s) 70, 395, 407
NlaIII CATG 2 cut(s) 343, 523
NlaIV GGNNCC 3 cut(s) 66, 148, 629
NmeAIII GCCGAG 1 cut(s) 188
NmuCI GTSAC 2 cut(s) 77, 541
NspV TTCGAA 2 cut(s) 345, 498
PaqCI CACCTGC 1 cut(s) 177
PciSI GCTCTTC 1 cut(s) 129
PcsI WCGNNNNNNNCGW 1 cut(s) 546
PfeI GAWTC 1 cut(s) 285
PkrI GCNGC 3 cut(s) 130, 355, 527
PleI GAGTC 2 cut(s) 50, 521
PpsI GAGTC 2 cut(s) 50, 521
Psp6I CCWGG 1 cut(s) 630
PspGI CCWGG 1 cut(s) 630
PspN4I GGNNCC 3 cut(s) 66, 148, 629
PspPI GGNCC 3 cut(s) 146, 390, 490
PstNI CAGNNNCTG 1 cut(s) 728
RsaI GTAC 1 cut(s) 614
RsaNI GTAC 1 cut(s) 613
RseI CAYNNNNRTG 2 cut(s) 224, 677
SapI GCTCTTC 1 cut(s) 129
SatI GCNGC 3 cut(s) 129, 354, 526
Sau3AI GATC 3 cut(s) 70, 395, 407
Sau96I GGNCC 3 cut(s) 146, 390, 490
SchI GAGTC 2 cut(s) 51, 522
ScrFI CCNGG 3 cut(s) 38, 558, 632
SduI GDGCHC 3 cut(s) 141, 507, 630
SetI ASST 9 cut(s) 8, 84, 108, 171, 261, 382, 474, 543, 548
SfaNI GCATC 1 cut(s) 221
SfcI CTRYAG 1 cut(s) 508
SfuI TTCGAA 2 cut(s) 345, 498
SinI GGWCC 1 cut(s) 390
SmiMI CAYNNNNRTG 2 cut(s) 224, 677
SsiI CCGC 4 cut(s) 216, 240, 250, 353
StyD4I CCNGG 3 cut(s) 36, 556, 630
StyI CCWWGG 1 cut(s) 649
TaaI ACNGT 2 cut(s) 390, 617
TaiI ACGT 3 cut(s) 84, 108, 543
TaqI TCGA 4 cut(s) 222, 345, 474, 498
TatI WGTACW 1 cut(s) 612
TauI GCSGC 1 cut(s) 356
TfiI GAWTC 1 cut(s) 285
TscAI CASTG 3 cut(s) 365, 489, 667
TseFI GTSAC 2 cut(s) 77, 541
TseI GCWGC 2 cut(s) 128, 525
Tsp45I GTSAC 2 cut(s) 77, 541
TspDTI ATGAA 2 cut(s) 439, 587
TspGWI ACGGA 1 cut(s) 116
TspRI CASTG 3 cut(s) 365, 489, 667
VpaK11BI GGWCC 1 cut(s) 390
XmiI GTMKAC 1 cut(s) 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.