pycom03g01000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0000512
Physical Location & Seq
Reverse (-)
778304 .. 778969
666 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g01000.1

Sequence Viewer

Length: 666 bp
ATGAACCGTGTTGTTAATCATTCTTATGATCAGTTCTTAAAGCCCTTTCTCTCTATACTTATGGCAAAGACAATCCAACTACTCAAAGTTCTTATAATTAGTCCGGATGATCATAATCGCGACTGCGAACAAGATCTAGAAGCTGCAATGCAACAGGTTGCAGACAAGACTAATTGCAACAACTTAGATTGGTCAAACATGATCGTCGAGTTTTGCTTGACAGCGGCGATTGGACTAGCGCTTCTCCCCATTCAAATGCACTCCGGCCACCTCCCTGTAATCTTTTACTTTCTTGTACTATCAGTCTTGCTTGCCTTCACTTGTATCTTGGTAAGCAAGTTTGTTCACTTCAGCTACTGTCCTGCTGGAATCTCGATCGCCCGGCTTTTCCATAATTTTGGCCTTTTCTTTGGGGTCACAGCCTTCTTCATATCCATCACCATCCCATTTCCTTTGTGGTTCAAATGTGCTGCCTATTCTATCTACGTTGCCGCCTTCCTCTTCATAAGACTTTGTAATCTTCACTTCAATAAATATTACAAACCTAATAGTTTTAAGTACCCAACCCTAATGAATTCTAAAACCGCCGTTGATCCTGCAACAGAATCATGCCGAGGCGTTACTAGTCCTTTTGATGATCAAGCATGCACCGATATAATTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

25.03

Weight (kDa)

7.01

Isoelectric Point (pI)

35.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 95
AccII CGCG 1 cut(s) 120
AccIII TCCGGA 1 cut(s) 103
AciI CCGC 3 cut(s) 224, 492, 585
AclWI GGATC 1 cut(s) 587
AcoI YGGCCR 1 cut(s) 265
AcsI RAATTY 1 cut(s) 574
AcuI CTGAAG 1 cut(s) 334
AfaI GTAC 2 cut(s) 297, 560
AfeI AGCGCT 1 cut(s) 240
AgsI TTSAA 3 cut(s) 254, 463, 529
AhlI ACTAGT 1 cut(s) 623
AluBI AGCT 2 cut(s) 143, 354
AluI AGCT 2 cut(s) 143, 354
AlwI GGATC 1 cut(s) 587
AlwNI CAGNNNCTG 1 cut(s) 357
Aor13HI TCCGGA 1 cut(s) 103
Aor51HI AGCGCT 1 cut(s) 240
AoxI GGCC 2 cut(s) 265, 400
ApeKI GCWGC 2 cut(s) 143, 470
ApoI RAATTY 1 cut(s) 574
AspLEI GCGC 1 cut(s) 241
AsuC2I CCSGG 1 cut(s) 382
AsuHPI GGTGA 1 cut(s) 430
BbvI GCAGC 2 cut(s) 130, 457
BccI CCATC 2 cut(s) 443, 449
BceAI ACGGC 1 cut(s) 572
BclI TGATCA 3 cut(s) 28, 109, 637
BcnI CCSGG 1 cut(s) 382
BcuI ACTAGT 1 cut(s) 623
BfaI CTAG 3 cut(s) 137, 236, 624
BfoI RGCGCY 1 cut(s) 242
BglII AGATCT 1 cut(s) 133
BisI GCNGC 4 cut(s) 144, 225, 471, 492
BlsI GCNGC 4 cut(s) 145, 226, 472, 493
Bme1390I CCNGG 1 cut(s) 382
BmrFI CCNGG 1 cut(s) 382
BpuMI CCSGG 1 cut(s) 382
BsaBI GATNNNNATC 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 613
BsaWI WCCGGW 1 cut(s) 103
Bse3DI GCAATG 1 cut(s) 153
Bse8I GATNNNNATC 1 cut(s) 114
BseAI TCCGGA 1 cut(s) 103
BseDI CCNNGG 1 cut(s) 613
BseGI GGATG 2 cut(s) 112, 441
BseJI GATNNNNATC 1 cut(s) 114
BseMI GCAATG 1 cut(s) 153
BseXI GCAGC 2 cut(s) 130, 457
Bsh1236I CGCG 1 cut(s) 120
Bsh1285I CGRYCG 1 cut(s) 378
BshFI GGCC 2 cut(s) 267, 402
BsiEI CGRYCG 1 cut(s) 378
BsiSI CCGG 3 cut(s) 104, 264, 382
BsnI GGCC 2 cut(s) 267, 402
Bsp13I TCCGGA 1 cut(s) 103
Bsp143I GATC 7 cut(s) 28, 109, 133, 201, 375, 592, 637
Bsp68I TCGCGA 1 cut(s) 120
BspACI CCGC 3 cut(s) 224, 492, 585
BspANI GGCC 2 cut(s) 267, 402
BspEI TCCGGA 1 cut(s) 103
BspFNI CGCG 1 cut(s) 120
BspPI GGATC 1 cut(s) 587
BsrDI GCAATG 1 cut(s) 153
BssECI CCNNGG 1 cut(s) 613
BssMI GATC 7 cut(s) 28, 109, 133, 201, 375, 592, 637
Bst4CI ACNGT 2 cut(s) 8, 359
Bst6I CTCTTC 1 cut(s) 506
BstC8I GCNNGC 2 cut(s) 312, 646
BstDEI CTNAG 1 cut(s) 184
BstF5I GGATG 2 cut(s) 112, 441
BstFNI CGCG 1 cut(s) 120
BstH2I RGCGCY 1 cut(s) 242
BstHHI GCGC 1 cut(s) 241
BstKTI GATC 7 cut(s) 31, 112, 136, 204, 378, 595, 640
BstMBI GATC 7 cut(s) 28, 109, 133, 201, 375, 592, 637
BstMCI CGRYCG 1 cut(s) 378
BstNSI RCATGY 1 cut(s) 648
BstSCI CCNGG 1 cut(s) 380
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 2 cut(s) 130, 457
BstX2I RGATCY 1 cut(s) 133
BstXI CCANNNNNNTGG 1 cut(s) 398
BstYI RGATCY 1 cut(s) 133
BsuRI GGCC 2 cut(s) 267, 402
BtsCI GGATG 2 cut(s) 112, 441
BtuMI TCGCGA 1 cut(s) 120
Cac8I GCNNGC 2 cut(s) 312, 646
CaiI CAGNNNCTG 1 cut(s) 357
CfoI GCGC 1 cut(s) 241
Csp6I GTAC 2 cut(s) 296, 559
CviAII CATG 3 cut(s) 199, 609, 645
CviJI RGCY 7 cut(s) 43, 143, 267, 354, 385, 402, 422
CviKI_1 RGCY 7 cut(s) 43, 143, 267, 354, 385, 402, 422
CviQI GTAC 2 cut(s) 296, 559
DdeI CTNAG 1 cut(s) 184
DpnI GATC 7 cut(s) 30, 111, 135, 203, 377, 594, 639
DpnII GATC 7 cut(s) 28, 109, 133, 201, 375, 592, 637
EaeI YGGCCR 1 cut(s) 265
Eam1104I CTCTTC 1 cut(s) 506
EarI CTCTTC 1 cut(s) 506
Eco47III AGCGCT 1 cut(s) 240
Eco57I CTGAAG 1 cut(s) 334
EcoRI GAATTC 1 cut(s) 574
FaeI CATG 3 cut(s) 202, 612, 648
FatI CATG 3 cut(s) 198, 608, 644
FbaI TGATCA 3 cut(s) 28, 109, 637
Fnu4HI GCNGC 4 cut(s) 144, 225, 471, 492
FokI GGATG 2 cut(s) 119, 428
Fsp4HI GCNGC 4 cut(s) 144, 225, 471, 492
FspBI CTAG 3 cut(s) 137, 236, 624
GlaI GCGC 1 cut(s) 240
GluI GCNGC 4 cut(s) 144, 225, 471, 492
HaeII RGCGCY 1 cut(s) 242
HaeIII GGCC 2 cut(s) 267, 402
HapII CCGG 3 cut(s) 104, 264, 382
HhaI GCGC 1 cut(s) 241
Hin1II CATG 3 cut(s) 202, 612, 648
Hin6I GCGC 1 cut(s) 239
HinP1I GCGC 1 cut(s) 239
HinfI GANTC 2 cut(s) 369, 605
HpaII CCGG 3 cut(s) 104, 264, 382
HphI GGTGA 1 cut(s) 430
Hpy166II GTNNAC 1 cut(s) 346
Hpy188III TCNNGA 4 cut(s) 104, 119, 137, 373
Hpy8I GTNNAC 1 cut(s) 346
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 3 cut(s) 325, 433, 505
HpyCH4III ACNGT 2 cut(s) 8, 359
HpyCH4IV ACGT 1 cut(s) 486
HpyCH4V TGCA 7 cut(s) 146, 151, 161, 177, 259, 599, 648
HpyF3I CTNAG 1 cut(s) 184
HpySE526I ACGT 1 cut(s) 486
Hsp92II CATG 3 cut(s) 202, 612, 648
HspAI GCGC 1 cut(s) 239
Kpn2I TCCGGA 1 cut(s) 103
Ksp22I TGATCA 3 cut(s) 28, 109, 637
Kzo9I GATC 7 cut(s) 28, 109, 133, 201, 375, 592, 637
LpnPI CCDG 8 cut(s) 117, 140, 277, 288, 351, 375, 395, 609
Lsp1109I GCAGC 2 cut(s) 130, 457
MaeI CTAG 3 cut(s) 137, 236, 624
MaeII ACGT 1 cut(s) 486
MaeIII GTNAC 2 cut(s) 415, 619
MalI GATC 7 cut(s) 30, 111, 135, 203, 377, 594, 639
MboI GATC 7 cut(s) 28, 109, 133, 201, 375, 592, 637
MboII GAAGA 3 cut(s) 418, 493, 512
MflI RGATCY 1 cut(s) 133
MluCI AATT 5 cut(s) 96, 172, 394, 574, 657
MmeI TCCRAC 1 cut(s) 100
MnlI CCTC 3 cut(s) 281, 509, 608
MroI TCCGGA 1 cut(s) 103
MseI TTAA 3 cut(s) 15, 38, 555
MslI CAYNNNNRTG 2 cut(s) 24, 254
MspA1I CMGCKG 1 cut(s) 224
MspI CCGG 3 cut(s) 104, 264, 382
MspR9I CCNGG 1 cut(s) 382
MvnI CGCG 1 cut(s) 120
NciI CCSGG 1 cut(s) 382
NdeII GATC 7 cut(s) 28, 109, 133, 201, 375, 592, 637
NlaIII CATG 3 cut(s) 202, 612, 648
NmeAIII GCCGAG 1 cut(s) 638
NmuCI GTSAC 1 cut(s) 415
NruI TCGCGA 1 cut(s) 120
NspI RCATGY 1 cut(s) 648
PaeI GCATGC 1 cut(s) 648
PfeI GAWTC 2 cut(s) 369, 605
PkrI GCNGC 4 cut(s) 145, 226, 472, 493
Ple19I CGATCG 1 cut(s) 378
PsiI TTATAA 1 cut(s) 95
PstNI CAGNNNCTG 1 cut(s) 357
PsuI RGATCY 1 cut(s) 133
PvuI CGATCG 1 cut(s) 378
RruI TCGCGA 1 cut(s) 120
RsaI GTAC 2 cut(s) 297, 560
RsaNI GTAC 2 cut(s) 296, 559
RseI CAYNNNNRTG 2 cut(s) 24, 254
SaqAI TTAA 3 cut(s) 15, 38, 555
SatI GCNGC 4 cut(s) 144, 225, 471, 492
Sau3AI GATC 7 cut(s) 28, 109, 133, 201, 375, 592, 637
ScrFI CCNGG 1 cut(s) 382
SetI ASST 6 cut(s) 145, 159, 273, 356, 489, 547
SmiMI CAYNNNNRTG 2 cut(s) 24, 254
SpeI ACTAGT 1 cut(s) 623
SphI GCATGC 1 cut(s) 648
Sse9I AATT 5 cut(s) 96, 172, 394, 574, 657
SsiI CCGC 3 cut(s) 224, 492, 585
SspI AATATT 1 cut(s) 536
SspMI CTAG 3 cut(s) 137, 236, 624
StyD4I CCNGG 1 cut(s) 380
TaaI ACNGT 2 cut(s) 8, 359
TaiI ACGT 1 cut(s) 489
TaqI TCGA 2 cut(s) 207, 374
TasI AATT 5 cut(s) 96, 172, 394, 574, 657
TatI WGTACW 1 cut(s) 295
TauI GCSGC 2 cut(s) 227, 494
TfiI GAWTC 2 cut(s) 369, 605
Tru1I TTAA 3 cut(s) 15, 38, 555
Tru9I TTAA 3 cut(s) 15, 38, 555
TseFI GTSAC 1 cut(s) 415
TseI GCWGC 2 cut(s) 143, 470
Tsp45I GTSAC 1 cut(s) 415
TspDTI ATGAA 4 cut(s) 17, 418, 493, 587
XapI RAATTY 1 cut(s) 574
XbaI TCTAGA 1 cut(s) 136
XceI RCATGY 1 cut(s) 648
XcmI CCANNNNNNNNNTGG 1 cut(s) 453
XspI CTAG 3 cut(s) 137, 236, 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.