Rroxscaffold_4G00283100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000512
Physical Location & Seq
Reverse (-)
5127859 .. 5129006
1148 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00283100.1

Sequence Viewer

Length: 450 bp
ATGACCTTTCAGCTTGCTGTTATCACAAAATTTATTCTCCGAATTTTTGGAGCATTCCATGGTCCTCCCGACACAGAAGCAGCTGAGCCAGACAGGCACCACCGCAACATAGATTGGCCTAAGATTATCGCCGTCTCTTGCTGGGCAGCCGGCATTGATATAGCCTTGCAATCCATTGATTCCATTCACTCCACTCTCCCCATAACCTTTTACTTTCTCGCCTTTGCAATCATATTTGCCATTACTTGTGTCTTTGGGAGCAACTTCATACACTCAAACCACCCAGTACCTGCTCTCATGCTCGAGCGATTTGGTATCTTCTTTGGCCTCACTGCCTTCTTCATAGCCATTATCATTCCATTTCCTTTGTGGTTCAGAGCTGTCACCTGCTTTATCTATGTTGTCTTCTGGTCTGCAATATTGTTCTGTAATTACAAATACGCTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.98

Weight (kDa)

6.99

Isoelectric Point (pI)

40.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 395
Acc36I ACCTGC 2 cut(s) 298, 395
AccB1I GGYRCC 1 cut(s) 96
AciI CCGC 1 cut(s) 103
AcsI RAATTY 2 cut(s) 29, 42
AfaI GTAC 1 cut(s) 288
AluBI AGCT 3 cut(s) 13, 83, 380
AluI AGCT 3 cut(s) 13, 83, 380
Alw26I GTCTC 1 cut(s) 139
AlwNI CAGNNNCTG 1 cut(s) 290
Ama87I CYCGRG 1 cut(s) 302
AoxI GGCC 2 cut(s) 116, 325
ApeKI GCWGC 2 cut(s) 80, 146
ApoI RAATTY 2 cut(s) 29, 42
AspS9I GGNCC 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 376
AvaI CYCGRG 1 cut(s) 302
AvaII GGWCC 1 cut(s) 62
BanI GGYRCC 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 397
BbvI GCAGC 2 cut(s) 92, 158
BceAI ACGGC 1 cut(s) 116
BcoDI GTCTC 1 cut(s) 139
BfuAI ACCTGC 2 cut(s) 298, 395
BglI GCCNNNNNGGC 1 cut(s) 94
BisI GCNGC 2 cut(s) 81, 147
BlpI GCTNAGC 1 cut(s) 84
BlsI GCNGC 2 cut(s) 82, 148
Bme18I GGWCC 1 cut(s) 62
BmeT110I CYCGRG 1 cut(s) 302
BmgT120I GGNCC 1 cut(s) 62
BmiI GGNNCC 1 cut(s) 98
BmrI ACTGGG 1 cut(s) 278
BmuI ACTGGG 1 cut(s) 278
BpiI GAAGAC 1 cut(s) 397
Bpu1102I GCTNAGC 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 58
Bse118I RCCGGY 1 cut(s) 149
Bse1I ACTGG 1 cut(s) 284
BseDI CCNNGG 1 cut(s) 58
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 284
BseXI GCAGC 2 cut(s) 92, 158
BseYI CCCAGC 1 cut(s) 141
BshFI GGCC 2 cut(s) 118, 327
BshNI GGYRCC 1 cut(s) 96
BsiHKCI CYCGRG 1 cut(s) 302
BsiSI CCGG 1 cut(s) 150
BsmAI GTCTC 1 cut(s) 139
BsmBI CGTCTC 1 cut(s) 139
BsmI GAATGC 1 cut(s) 53
BsnI GGCC 2 cut(s) 118, 327
BsoBI CYCGRG 1 cut(s) 302
Bsp1720I GCTNAGC 1 cut(s) 84
Bsp19I CCATGG 1 cut(s) 58
BspACI CCGC 1 cut(s) 103
BspANI GGCC 2 cut(s) 118, 327
BspCNI CTCAG 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 98
BspMI ACCTGC 2 cut(s) 298, 395
BspT107I GGYRCC 1 cut(s) 96
BsrFI RCCGGY 1 cut(s) 149
BsrI ACTGG 1 cut(s) 284
BssAI RCCGGY 1 cut(s) 149
BssECI CCNNGG 1 cut(s) 58
BssT1I CCWWGG 1 cut(s) 58
BstC8I GCNNGC 2 cut(s) 15, 151
BstDEI CTNAG 2 cut(s) 84, 120
BstDSI CCRYGG 1 cut(s) 58
BstMAI GTCTC 1 cut(s) 139
BstMWI GCNNNNNNNGC 1 cut(s) 94
BstV1I GCAGC 2 cut(s) 92, 158
BstV2I GAAGAC 1 cut(s) 397
BsuRI GGCC 2 cut(s) 118, 327
BtgI CCRYGG 1 cut(s) 58
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 1 cut(s) 330
BveI ACCTGC 2 cut(s) 298, 395
Cac8I GCNNGC 2 cut(s) 15, 151
CaiI CAGNNNCTG 1 cut(s) 290
Cfr10I RCCGGY 1 cut(s) 149
Cfr13I GGNCC 1 cut(s) 62
Csp6I GTAC 1 cut(s) 287
CviAII CATG 2 cut(s) 59, 298
CviJI RGCY 9 cut(s) 13, 83, 88, 118, 149, 164, 327, 347, 380
CviKI_1 RGCY 9 cut(s) 13, 83, 88, 118, 149, 164, 327, 347, 380
CviQI GTAC 1 cut(s) 287
DdeI CTNAG 2 cut(s) 84, 120
Eco130I CCWWGG 1 cut(s) 58
Eco47I GGWCC 1 cut(s) 62
Eco88I CYCGRG 1 cut(s) 302
EcoT14I CCWWGG 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 58
Esp3I CGTCTC 1 cut(s) 139
FaeI CATG 2 cut(s) 62, 301
FaiI YATR 9 cut(s) 60, 110, 161, 203, 233, 269, 299, 344, 399
FatI CATG 2 cut(s) 58, 297
Fnu4HI GCNGC 2 cut(s) 81, 147
Fsp4HI GCNGC 2 cut(s) 81, 147
GluI GCNGC 2 cut(s) 81, 147
GsaI CCCAGC 1 cut(s) 145
HaeIII GGCC 2 cut(s) 118, 327
HapII CCGG 1 cut(s) 150
Hin1II CATG 2 cut(s) 62, 301
HinfI GANTC 1 cut(s) 179
HpaII CCGG 1 cut(s) 150
HphI GGTGA 1 cut(s) 376
Hpy188I TCNGA 2 cut(s) 41, 377
Hpy188III TCNNGA 1 cut(s) 68
HpyAV CCTTC 1 cut(s) 346
HpyCH4V TGCA 3 cut(s) 169, 227, 416
HpyF10VI GCNNNNNNNGC 1 cut(s) 94
HpyF3I CTNAG 2 cut(s) 84, 120
Hsp92II CATG 2 cut(s) 62, 301
KroI GCCGGC 1 cut(s) 149
KroNI GCCGGC 1 cut(s) 151
LmnI GCTCC 2 cut(s) 50, 258
LpnPI CCDG 8 cut(s) 79, 102, 127, 163, 297, 303, 394, 400
Lsp1109I GCAGC 2 cut(s) 92, 158
MaeIII GTNAC 1 cut(s) 382
MboII GAAGA 3 cut(s) 310, 331, 397
MluCI AATT 3 cut(s) 29, 42, 430
MnlI CCTC 2 cut(s) 75, 338
MroNI GCCGGC 1 cut(s) 149
MspA1I CMGCKG 1 cut(s) 83
MspI CCGG 1 cut(s) 150
Mva1269I GAATGC 1 cut(s) 53
MwoI GCNNNNNNNGC 1 cut(s) 94
NaeI GCCGGC 1 cut(s) 151
NcoI CCATGG 1 cut(s) 58
NgoMIV GCCGGC 1 cut(s) 149
NlaIII CATG 2 cut(s) 62, 301
NlaIV GGNNCC 1 cut(s) 98
NmuCI GTSAC 1 cut(s) 382
PaeR7I CTCGAG 1 cut(s) 302
PaqCI CACCTGC 1 cut(s) 395
PctI GAATGC 1 cut(s) 53
PdiI GCCGGC 1 cut(s) 151
PfeI GAWTC 1 cut(s) 179
PkrI GCNGC 2 cut(s) 82, 148
PspFI CCCAGC 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 98
PspPI GGNCC 1 cut(s) 62
PspXI VCTCGAGB 1 cut(s) 302
PstNI CAGNNNCTG 1 cut(s) 290
PvuII CAGCTG 1 cut(s) 83
RsaI GTAC 1 cut(s) 288
RsaNI GTAC 1 cut(s) 287
SatI GCNGC 2 cut(s) 81, 147
Sau96I GGNCC 1 cut(s) 62
SetI ASST 7 cut(s) 8, 15, 85, 209, 292, 382, 389
Sfr274I CTCGAG 1 cut(s) 302
SinI GGWCC 1 cut(s) 62
SlaI CTCGAG 1 cut(s) 302
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
Sse9I AATT 3 cut(s) 29, 42, 430
SsiI CCGC 1 cut(s) 103
SspI AATATT 1 cut(s) 420
StyI CCWWGG 1 cut(s) 58
TaqI TCGA 1 cut(s) 303
TasI AATT 3 cut(s) 29, 42, 430
TfiI GAWTC 1 cut(s) 179
TscAI CASTG 1 cut(s) 337
TseFI GTSAC 1 cut(s) 382
TseI GCWGC 2 cut(s) 80, 146
Tsp45I GTSAC 1 cut(s) 382
TspDTI ATGAA 2 cut(s) 256, 331
TspRI CASTG 1 cut(s) 337
VpaK11BI GGWCC 1 cut(s) 62
XapI RAATTY 2 cut(s) 29, 42
XcmI CCANNNNNNNNNTGG 1 cut(s) 366
XhoI CTCGAG 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.