Rmu_sc0000215.1_g000008

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000215.1
OG0000512
Physical Location & Seq
Forward (+)
60721 .. 62586
1866 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000215.1_g000008.1.cds

Sequence Viewer

Length: 681 bp
atgaatttttctgctgctattacaaaactgctgcagctagttcagaaacctggcccatttcatggtcttccaactcctcctgacccagaagcagtggtgcccgatcatcaagtacaacggcgccaaaactttgactgggctaagataattgtggtgtttagcttgggatcagcaatcgacatagctctcctatcagtccaagttcactcccaacttcctataatcttctactttttcgagcttgctatcttgcttgcatttacttgtttcttcataagcaagttggttcatacaaattgtccactagtcgctcaggtgctcgagcgatttggcatcttctttggcgtcacttttcgaaaagggaacgacgctaggaagagaattcgtcgcttcgccatgatgtgtggggtttttcaggctttcgggatacagaagctgacatgttccttaagaatgcttacttatggtgctggggcaaaccaatgcgctgagtattgtcggatggcgaaatctacctccatcaaggctcttcaacgatttacaagaagaatcattaatctgtactcggcagaatacgaccgggctcctactccggctgacctcagaagactgctcgccaaagctgagataagaggctttcctatgatgattggaagcatcgactgcatgcactggcaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

226

Amino Acids

25.64

Weight (kDa)

9.8

Isoelectric Point (pI)

32.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 97, 120
AccB7I CCANNNNNTGG 1 cut(s) 62
AclWI GGATC 1 cut(s) 175
AcsI RAATTY 2 cut(s) 4, 381
AcyI GRCGYC 2 cut(s) 121, 345
AfaI GTAC 2 cut(s) 114, 563
AfiI CCNNNNNNNGG 1 cut(s) 62
AflII CTTAAG 1 cut(s) 448
AflIII ACRYGT 1 cut(s) 440
AgsI TTSAA 1 cut(s) 533
AhlI ACTAGT 1 cut(s) 304
AjnI CCWGG 1 cut(s) 49
AluBI AGCT 6 cut(s) 37, 162, 185, 241, 436, 623
AluI AGCT 6 cut(s) 37, 162, 185, 241, 436, 623
Alw21I GWGCWC 1 cut(s) 321
AlwI GGATC 1 cut(s) 175
AlwNI CAGNNNCTG 1 cut(s) 436
Ama87I CYCGRG 1 cut(s) 320
AoxI GGCC 1 cut(s) 52
ApeKI GCWGC 3 cut(s) 14, 31, 34
ApoI RAATTY 2 cut(s) 4, 381
AseI ATTAAT 1 cut(s) 555
AspLEI GCGC 2 cut(s) 123, 488
AspS9I GGNCC 1 cut(s) 53
AsuC2I CCSGG 1 cut(s) 581
AsuII TTCGAA 1 cut(s) 355
AvaI CYCGRG 1 cut(s) 320
BaeGI GKGCMC 1 cut(s) 102
BanI GGYRCC 2 cut(s) 97, 120
BanII GRGCYC 1 cut(s) 586
BbsI GAAGAC 2 cut(s) 59, 613
Bbv12I GWGCWC 1 cut(s) 321
BbvI GCAGC 2 cut(s) 18, 46
BccI CCATC 2 cut(s) 496, 527
BceAI ACGGC 1 cut(s) 134
BciT130I CCWGG 1 cut(s) 51
BciVI GTATCC 1 cut(s) 420
BcnI CCSGG 1 cut(s) 581
BcuI ACTAGT 1 cut(s) 304
BfaI CTAG 3 cut(s) 38, 305, 372
BfmI CTRYAG 1 cut(s) 32
BfoI RGCGCY 1 cut(s) 124
BfrI CTTAAG 1 cut(s) 448
BfuI GTATCC 1 cut(s) 420
BisI GCNGC 3 cut(s) 15, 32, 35
BlsI GCNGC 3 cut(s) 16, 33, 36
Bme1390I CCNGG 2 cut(s) 51, 581
BmeT110I CYCGRG 1 cut(s) 320
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 3 cut(s) 99, 122, 585
BmrFI CCNGG 2 cut(s) 51, 581
BmrI ACTGGG 1 cut(s) 145
BmsI GCATC 2 cut(s) 342, 666
BmuI ACTGGG 1 cut(s) 145
BpiI GAAGAC 2 cut(s) 59, 613
Bpu10I CCTNAGC 1 cut(s) 312
Bpu14I TTCGAA 1 cut(s) 355
BpuMI CCSGG 1 cut(s) 581
BsaHI GRCGYC 2 cut(s) 121, 345
Bsc4I CCNNNNNNNGG 1 cut(s) 62
Bse1I ACTGG 2 cut(s) 140, 677
BseBI CCWGG 1 cut(s) 51
BseGI GGATG 1 cut(s) 507
BseLI CCNNNNNNNGG 1 cut(s) 62
BseMII CTCAG 4 cut(s) 326, 480, 615, 616
BseNI ACTGG 2 cut(s) 140, 677
BseRI GAGGAG 1 cut(s) 66
BseSI GKGCMC 1 cut(s) 102
BseXI GCAGC 2 cut(s) 18, 46
BseYI CCCAGC 1 cut(s) 470
Bsh1285I CGRYCG 1 cut(s) 580
BshFI GGCC 1 cut(s) 54
BshNI GGYRCC 2 cut(s) 97, 120
BsiEI CGRYCG 1 cut(s) 580
BsiHKAI GWGCWC 1 cut(s) 321
BsiHKCI CYCGRG 1 cut(s) 320
BsiSI CCGG 2 cut(s) 580, 593
BslI CCNNNNNNNGG 1 cut(s) 62
BsmI GAATGC 1 cut(s) 459
BsnI GGCC 1 cut(s) 54
BsoBI CYCGRG 1 cut(s) 320
Bsp119I TTCGAA 1 cut(s) 355
Bsp1286I GDGCHC 3 cut(s) 102, 321, 586
Bsp143I GATC 2 cut(s) 103, 167
BspANI GGCC 1 cut(s) 54
BspCNI CTCAG 4 cut(s) 325, 481, 615, 616
BspLI GGNNCC 3 cut(s) 99, 122, 585
BspMAI CTGCAG 1 cut(s) 36
BspPI GGATC 1 cut(s) 175
BspQI GCTCTTC 1 cut(s) 534
BspT104I TTCGAA 1 cut(s) 355
BspT107I GGYRCC 2 cut(s) 97, 120
BspTI CTTAAG 1 cut(s) 448
BsrI ACTGG 2 cut(s) 140, 677
BssMI GATC 2 cut(s) 103, 167
BssNI GRCGYC 2 cut(s) 121, 345
Bst2UI CCWGG 1 cut(s) 51
Bst6I CTCTTC 2 cut(s) 371, 534
BstACI GRCGYC 2 cut(s) 121, 345
BstAFI CTTAAG 1 cut(s) 448
BstAPI GCANNNNNTGC 1 cut(s) 663
BstBI TTCGAA 1 cut(s) 355
BstC8I GCNNGC 4 cut(s) 243, 255, 615, 668
BstDEI CTNAG 5 cut(s) 141, 312, 489, 602, 624
BstF5I GGATG 1 cut(s) 507
BstH2I RGCGCY 1 cut(s) 124
BstHHI GCGC 2 cut(s) 123, 488
BstKTI GATC 2 cut(s) 106, 170
BstMBI GATC 2 cut(s) 103, 167
BstMCI CGRYCG 1 cut(s) 580
BstMWI GCNNNNNNNGC 1 cut(s) 663
BstNI CCWGG 1 cut(s) 51
BstNSI RCATGY 2 cut(s) 444, 670
BstSCI CCNGG 2 cut(s) 49, 579
BstSFI CTRYAG 1 cut(s) 32
BstSLI GKGCMC 1 cut(s) 102
BstV1I GCAGC 2 cut(s) 18, 46
BstV2I GAAGAC 2 cut(s) 59, 613
BsuI GTATCC 1 cut(s) 420
BsuRI GGCC 1 cut(s) 54
BtsCI GGATG 1 cut(s) 507
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 2 cut(s) 99, 670
Cac8I GCNNGC 4 cut(s) 243, 255, 615, 668
CaiI CAGNNNCTG 1 cut(s) 436
CfoI GCGC 2 cut(s) 123, 488
Cfr13I GGNCC 1 cut(s) 53
CseI GACGC 2 cut(s) 334, 377
Csp6I GTAC 2 cut(s) 113, 562
CviAII CATG 4 cut(s) 62, 397, 441, 667
CviQI GTAC 2 cut(s) 113, 562
DdeI CTNAG 5 cut(s) 141, 312, 489, 602, 624
DinI GGCGCC 1 cut(s) 122
DpnI GATC 2 cut(s) 105, 169
DpnII GATC 2 cut(s) 103, 167
Eam1104I CTCTTC 2 cut(s) 371, 534
EarI CTCTTC 2 cut(s) 371, 534
Eco24I GRGCYC 1 cut(s) 586
Eco88I CYCGRG 1 cut(s) 320
EcoRI GAATTC 1 cut(s) 381
EcoRII CCWGG 1 cut(s) 49
EcoT38I GRGCYC 1 cut(s) 586
EgeI GGCGCC 1 cut(s) 122
EheI GGCGCC 1 cut(s) 122
FaeI CATG 4 cut(s) 65, 400, 444, 670
FatI CATG 4 cut(s) 61, 396, 440, 666
Fnu4HI GCNGC 3 cut(s) 15, 32, 35
FokI GGATG 1 cut(s) 514
FriOI GRGCYC 1 cut(s) 586
Fsp4HI GCNGC 3 cut(s) 15, 32, 35
FspBI CTAG 3 cut(s) 38, 305, 372
GlaI GCGC 2 cut(s) 122, 487
GluI GCNGC 3 cut(s) 15, 32, 35
GsaI CCCAGC 1 cut(s) 474
HaeII RGCGCY 1 cut(s) 124
HaeIII GGCC 1 cut(s) 54
HapII CCGG 2 cut(s) 580, 593
HgaI GACGC 2 cut(s) 334, 377
HhaI GCGC 2 cut(s) 123, 488
Hin1I GRCGYC 2 cut(s) 121, 345
Hin1II CATG 4 cut(s) 65, 400, 444, 670
Hin6I GCGC 2 cut(s) 121, 486
HinP1I GCGC 2 cut(s) 121, 486
HinfI GANTC 1 cut(s) 549
HpaII CCGG 2 cut(s) 580, 593
Hpy166II GTNNAC 2 cut(s) 205, 302
Hpy188I TCNGA 3 cut(s) 45, 501, 605
Hpy188III TCNNGA 2 cut(s) 80, 424
Hpy8I GTNNAC 2 cut(s) 205, 302
Hpy99I CGWCG 2 cut(s) 371, 390
HpyCH4V TGCA 4 cut(s) 34, 257, 666, 670
HpyF10VI GCNNNNNNNGC 1 cut(s) 663
HpyF3I CTNAG 5 cut(s) 141, 312, 489, 602, 624
Hsp92I GRCGYC 2 cut(s) 121, 345
Hsp92II CATG 4 cut(s) 65, 400, 444, 670
HspAI GCGC 2 cut(s) 121, 486
KasI GGCGCC 1 cut(s) 120
Kzo9I GATC 2 cut(s) 103, 167
LguI GCTCTTC 1 cut(s) 534
LmnI GCTCC 1 cut(s) 589
Lsp1109I GCAGC 2 cut(s) 18, 46
LweI GCATC 2 cut(s) 342, 666
MaeI CTAG 3 cut(s) 38, 305, 372
MaeIII GTNAC 1 cut(s) 346
MalI GATC 2 cut(s) 105, 169
MboI GATC 2 cut(s) 103, 167
MboII GAAGA 8 cut(s) 59, 217, 262, 328, 388, 521, 558, 618
MhlI GDGCHC 3 cut(s) 102, 321, 586
MluCI AATT 4 cut(s) 4, 147, 295, 381
Mly113I GGCGCC 1 cut(s) 121
MmeI TCCRAC 2 cut(s) 95, 479
MnlI CCTC 4 cut(s) 87, 526, 611, 626
MseI TTAA 2 cut(s) 449, 555
MspCI CTTAAG 1 cut(s) 448
MspI CCGG 2 cut(s) 580, 593
MspR9I CCNGG 2 cut(s) 51, 581
Mva1269I GAATGC 1 cut(s) 459
MvaI CCWGG 1 cut(s) 51
MwoI GCNNNNNNNGC 1 cut(s) 663
NarI GGCGCC 1 cut(s) 121
NciI CCSGG 1 cut(s) 581
NdeII GATC 2 cut(s) 103, 167
NlaIII CATG 4 cut(s) 65, 400, 444, 670
NlaIV GGNNCC 3 cut(s) 99, 122, 585
NmeAIII GCCGAG 1 cut(s) 545
NmuCI GTSAC 1 cut(s) 346
NspI RCATGY 2 cut(s) 444, 670
NspV TTCGAA 1 cut(s) 355
PaeI GCATGC 1 cut(s) 670
PaeR7I CTCGAG 1 cut(s) 320
PciI ACATGT 1 cut(s) 440
PciSI GCTCTTC 1 cut(s) 534
PctI GAATGC 1 cut(s) 459
PfeI GAWTC 1 cut(s) 549
PflMI CCANNNNNTGG 1 cut(s) 62
PkrI GCNGC 3 cut(s) 16, 33, 36
PluTI GGCGCC 1 cut(s) 124
PscI ACATGT 1 cut(s) 440
PshBI ATTAAT 1 cut(s) 555
Psp6I CCWGG 1 cut(s) 49
PspFI CCCAGC 1 cut(s) 470
PspGI CCWGG 1 cut(s) 49
PspN4I GGNNCC 3 cut(s) 99, 122, 585
PspPI GGNCC 1 cut(s) 53
PspXI VCTCGAGB 1 cut(s) 320
PstI CTGCAG 1 cut(s) 36
PstNI CAGNNNCTG 1 cut(s) 436
RsaI GTAC 2 cut(s) 114, 563
RsaNI GTAC 2 cut(s) 113, 562
SapI GCTCTTC 1 cut(s) 534
SaqAI TTAA 2 cut(s) 449, 555
SatI GCNGC 3 cut(s) 15, 32, 35
Sau3AI GATC 2 cut(s) 103, 167
Sau96I GGNCC 1 cut(s) 53
ScrFI CCNGG 2 cut(s) 51, 581
SduI GDGCHC 3 cut(s) 102, 321, 586
SfaNI GCATC 2 cut(s) 342, 666
SfcI CTRYAG 1 cut(s) 32
SfoI GGCGCC 1 cut(s) 122
Sfr274I CTCGAG 1 cut(s) 320
SfuI TTCGAA 1 cut(s) 355
SlaI CTCGAG 1 cut(s) 320
SmlI CTYRAG 2 cut(s) 320, 448
SmoI CTYRAG 2 cut(s) 320, 448
SpeI ACTAGT 1 cut(s) 304
SphI GCATGC 1 cut(s) 670
Sse9I AATT 4 cut(s) 4, 147, 295, 381
SspDI GGCGCC 1 cut(s) 120
SspMI CTAG 3 cut(s) 38, 305, 372
StyD4I CCNGG 2 cut(s) 49, 579
TaqI TCGA 5 cut(s) 177, 237, 321, 355, 660
TasI AATT 4 cut(s) 4, 147, 295, 381
TatI WGTACW 2 cut(s) 112, 561
TfiI GAWTC 1 cut(s) 549
Tru1I TTAA 2 cut(s) 449, 555
Tru9I TTAA 2 cut(s) 449, 555
TscAI CASTG 2 cut(s) 99, 677
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 3 cut(s) 14, 31, 34
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 4 cut(s) 17, 50, 262, 278
TspRI CASTG 2 cut(s) 99, 677
Van91I CCANNNNNTGG 1 cut(s) 62
Vha464I CTTAAG 1 cut(s) 448
VspI ATTAAT 1 cut(s) 555
XapI RAATTY 2 cut(s) 4, 381
XceI RCATGY 2 cut(s) 444, 670
XhoI CTCGAG 1 cut(s) 320
XspI CTAG 3 cut(s) 38, 305, 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.