Rh7AG062800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000512
Physical Location & Seq
Forward (+)
4365936 .. 4366559
624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG062800.1

Sequence Viewer

Length: 624 bp
ATGCAACGTCCACCCGTGGGTCCATCGATCAGTCGCCCCGTCGGGCACTTTTCTTTGGTAGTTCAATCACTCCATATATGTGGCAAACATCAACACTCCTTCTCTTCACATTCACATGCTTGCTCTCCTTTCTTTGTTCCTGGCTTTCCATTTTTTCGCCACCAAATAGCTGCTAGCAAAATGAGTTTTGCTGCAGCTATTACAAAACTGCTGCAGCTAGTTCAGAGAATGCTAGCAGTGGCGCCTGATGATCAAGTTCCACGGCACCAAAACTTAGACTGGGCTAAGATAATTGTGGTGTTTAGCTTGGCATCAGCAGTCGACATAGCTCTCCTATCAGTCCAAGTTCACTTGAATCACTCCCAACTTCCTATATTTTTCTACTTTCTCGAGCTTGCTATCTTGCTTGCCTTTACTTGTTTATTTACAAGCAAGCAAGTTTATTCCAACTGTCCACTAGTCGCTCAGGCACTCGAGCAGTTTGGCATCTTCTTTGGAGTCAGTGCCTTCTTCATATGCATCACAGTTCCTTTTCCGGCTGTCTGGTTCAAATGCATTGCATGCTTCATCTACGCAGTCTCATGGCTTGTGATATTCTTTTGTAATTATTGCTTCTGTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

23.2

Weight (kDa)

8.73

Isoelectric Point (pI)

45.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 241, 264
AccI GTMKAC 1 cut(s) 321
AcyI GRCGYC 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 17
AgsI TTSAA 3 cut(s) 65, 355, 550
AhlI ACTAGT 1 cut(s) 457
AjnI CCWGG 1 cut(s) 139
AluBI AGCT 6 cut(s) 170, 197, 217, 306, 329, 394
AluI AGCT 6 cut(s) 170, 197, 217, 306, 329, 394
Alw26I GTCTC 1 cut(s) 583
Ama87I CYCGRG 2 cut(s) 389, 473
ApeKI GCWGC 5 cut(s) 170, 191, 194, 211, 214
AspLEI GCGC 1 cut(s) 244
AspS9I GGNCC 1 cut(s) 20
AsuNHI GCTAGC 2 cut(s) 173, 232
AvaI CYCGRG 2 cut(s) 389, 473
AvaII GGWCC 1 cut(s) 20
BaeGI GKGCMC 1 cut(s) 48
BanI GGYRCC 2 cut(s) 241, 264
BbvI GCAGC 5 cut(s) 157, 178, 198, 206, 226
BccI CCATC 1 cut(s) 31
BceAI ACGGC 1 cut(s) 278
BciT130I CCWGG 1 cut(s) 141
BclI TGATCA 1 cut(s) 250
BcoDI GTCTC 1 cut(s) 583
BcuI ACTAGT 1 cut(s) 457
BfaI CTAG 4 cut(s) 174, 218, 233, 458
BfmI CTRYAG 2 cut(s) 192, 212
BfoI RGCGCY 1 cut(s) 245
BisI GCNGC 5 cut(s) 171, 192, 195, 212, 215
BlsI GCNGC 5 cut(s) 172, 193, 196, 213, 216
Bme1390I CCNGG 1 cut(s) 141
Bme18I GGWCC 1 cut(s) 20
BmeT110I CYCGRG 2 cut(s) 389, 473
BmgT120I GGNCC 1 cut(s) 20
BmiI GGNNCC 3 cut(s) 21, 243, 266
BmrFI CCNGG 1 cut(s) 141
BmrI ACTGGG 1 cut(s) 289
BmsI GCATC 3 cut(s) 320, 495, 528
BmtI GCTAGC 2 cut(s) 177, 236
BmuI ACTGGG 1 cut(s) 289
Bpu10I CCTNAGC 1 cut(s) 465
Bsa29I ATCGAT 1 cut(s) 26
BsaHI GRCGYC 1 cut(s) 242
BsaJI CCNNGG 2 cut(s) 15, 260
Bsc4I CCNNNNNNNGG 1 cut(s) 17
Bse1I ACTGG 1 cut(s) 284
Bse3DI GCAATG 1 cut(s) 555
BseBI CCWGG 1 cut(s) 141
BseCI ATCGAT 1 cut(s) 26
BseDI CCNNGG 2 cut(s) 15, 260
BseLI CCNNNNNNNGG 1 cut(s) 17
BseMI GCAATG 1 cut(s) 555
BseMII CTCAG 1 cut(s) 479
BseNI ACTGG 1 cut(s) 284
BseSI GKGCMC 1 cut(s) 48
BseXI GCAGC 5 cut(s) 157, 178, 198, 206, 226
BshNI GGYRCC 2 cut(s) 241, 264
BshVI ATCGAT 1 cut(s) 26
BsiHKCI CYCGRG 2 cut(s) 389, 473
BsiSI CCGG 1 cut(s) 536
BslI CCNNNNNNNGG 1 cut(s) 17
BsmAI GTCTC 1 cut(s) 583
BsmI GAATGC 1 cut(s) 234
BsoBI CYCGRG 2 cut(s) 389, 473
Bsp1286I GDGCHC 1 cut(s) 48
Bsp143I GATC 2 cut(s) 27, 250
BspCNI CTCAG 1 cut(s) 478
BspDI ATCGAT 1 cut(s) 26
BspLI GGNNCC 3 cut(s) 21, 243, 266
BspMAI CTGCAG 2 cut(s) 196, 216
BspOI GCTAGC 2 cut(s) 177, 236
BspT107I GGYRCC 2 cut(s) 241, 264
BsrDI GCAATG 1 cut(s) 555
BsrI ACTGG 1 cut(s) 284
BssECI CCNNGG 2 cut(s) 15, 260
BssMI GATC 2 cut(s) 27, 250
BssNI GRCGYC 1 cut(s) 242
Bst2UI CCWGG 1 cut(s) 141
Bst4CI ACNGT 2 cut(s) 452, 526
Bst6I CTCTTC 1 cut(s) 109
BstACI GRCGYC 1 cut(s) 242
BstAPI GCANNNNNTGC 1 cut(s) 561
BstC8I GCNNGC 7 cut(s) 121, 175, 234, 396, 408, 434, 562
BstDEI CTNAG 3 cut(s) 274, 285, 465
BstDSI CCRYGG 2 cut(s) 15, 260
BstH2I RGCGCY 1 cut(s) 245
BstHHI GCGC 1 cut(s) 244
BstKTI GATC 2 cut(s) 30, 253
BstMAI GTCTC 1 cut(s) 583
BstMBI GATC 2 cut(s) 27, 250
BstMWI GCNNNNNNNGC 1 cut(s) 561
BstNI CCWGG 1 cut(s) 141
BstNSI RCATGY 2 cut(s) 119, 564
BstSCI CCNGG 1 cut(s) 139
BstSFI CTRYAG 2 cut(s) 192, 212
BstSLI GKGCMC 1 cut(s) 48
BstV1I GCAGC 5 cut(s) 157, 178, 198, 206, 226
BstXI CCANNNNNNTGG 1 cut(s) 80
Bsu15I ATCGAT 1 cut(s) 26
BsuTUI ATCGAT 1 cut(s) 26
BtgI CCRYGG 2 cut(s) 15, 260
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 2 cut(s) 243, 508
Cac8I GCNNGC 7 cut(s) 121, 175, 234, 396, 408, 434, 562
CfoI GCGC 1 cut(s) 244
Cfr13I GGNCC 1 cut(s) 20
ClaI ATCGAT 1 cut(s) 26
CviAII CATG 3 cut(s) 116, 561, 582
DdeI CTNAG 3 cut(s) 274, 285, 465
DinI GGCGCC 1 cut(s) 243
DpnI GATC 2 cut(s) 29, 252
DpnII GATC 2 cut(s) 27, 250
Eam1104I CTCTTC 1 cut(s) 109
EarI CTCTTC 1 cut(s) 109
Eco47I GGWCC 1 cut(s) 20
Eco88I CYCGRG 2 cut(s) 389, 473
EcoRII CCWGG 1 cut(s) 139
EcoT22I ATGCAT 2 cut(s) 521, 557
EgeI GGCGCC 1 cut(s) 243
EheI GGCGCC 1 cut(s) 243
FaeI CATG 3 cut(s) 119, 564, 585
FatI CATG 3 cut(s) 115, 560, 581
FauNDI CATATG 1 cut(s) 515
FbaI TGATCA 1 cut(s) 250
FblI GTMKAC 1 cut(s) 321
Fnu4HI GCNGC 5 cut(s) 171, 192, 195, 212, 215
Fsp4HI GCNGC 5 cut(s) 171, 192, 195, 212, 215
FspBI CTAG 4 cut(s) 174, 218, 233, 458
GlaI GCGC 1 cut(s) 243
GluI GCNGC 5 cut(s) 171, 192, 195, 212, 215
HaeII RGCGCY 1 cut(s) 245
HapII CCGG 1 cut(s) 536
HhaI GCGC 1 cut(s) 244
Hin1I GRCGYC 1 cut(s) 242
Hin1II CATG 3 cut(s) 119, 564, 585
Hin6I GCGC 1 cut(s) 242
HinP1I GCGC 1 cut(s) 242
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 2 cut(s) 355, 498
HpaII CCGG 1 cut(s) 536
Hpy166II GTNNAC 4 cut(s) 11, 322, 349, 455
Hpy188I TCNGA 1 cut(s) 225
Hpy188III TCNNGA 1 cut(s) 389
Hpy8I GTNNAC 4 cut(s) 11, 322, 349, 455
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 2 cut(s) 109, 517
HpyCH4III ACNGT 2 cut(s) 452, 526
HpyCH4IV ACGT 1 cut(s) 7
HpyCH4V TGCA 6 cut(s) 4, 194, 214, 519, 555, 560
HpyF10VI GCNNNNNNNGC 1 cut(s) 561
HpyF3I CTNAG 3 cut(s) 274, 285, 465
HpySE526I ACGT 1 cut(s) 7
Hsp92I GRCGYC 1 cut(s) 242
Hsp92II CATG 3 cut(s) 119, 564, 585
HspAI GCGC 1 cut(s) 242
KasI GGCGCC 1 cut(s) 241
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 2 cut(s) 27, 250
LpnPI CCDG 7 cut(s) 126, 153, 258, 265, 452, 529, 549
Lsp1109I GCAGC 5 cut(s) 157, 178, 198, 206, 226
LweI GCATC 3 cut(s) 320, 495, 528
MaeI CTAG 4 cut(s) 174, 218, 233, 458
MaeII ACGT 1 cut(s) 7
MalI GATC 2 cut(s) 29, 252
MboI GATC 2 cut(s) 27, 250
MboII GAAGA 3 cut(s) 96, 481, 502
MhlI GDGCHC 1 cut(s) 48
MluCI AATT 2 cut(s) 291, 604
Mly113I GGCGCC 1 cut(s) 242
MlyI GAGTC 1 cut(s) 507
MmeI TCCRAC 1 cut(s) 471
Mph1103I ATGCAT 2 cut(s) 521, 557
MseI TTAA 1 cut(s) 622
MslI CAYNNNNRTG 2 cut(s) 78, 114
MspI CCGG 1 cut(s) 536
MspR9I CCNGG 1 cut(s) 141
Mva1269I GAATGC 1 cut(s) 234
MvaI CCWGG 1 cut(s) 141
MwoI GCNNNNNNNGC 1 cut(s) 561
NarI GGCGCC 1 cut(s) 242
NdeI CATATG 1 cut(s) 515
NdeII GATC 2 cut(s) 27, 250
NheI GCTAGC 2 cut(s) 173, 232
NlaIII CATG 3 cut(s) 119, 564, 585
NlaIV GGNNCC 3 cut(s) 21, 243, 266
NsiI ATGCAT 2 cut(s) 521, 557
NspI RCATGY 2 cut(s) 119, 564
PaeI GCATGC 1 cut(s) 564
PaeR7I CTCGAG 2 cut(s) 389, 473
PctI GAATGC 1 cut(s) 234
PfeI GAWTC 1 cut(s) 355
PkrI GCNGC 5 cut(s) 172, 193, 196, 213, 216
PleI GAGTC 1 cut(s) 506
PluTI GGCGCC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 506
Psp6I CCWGG 1 cut(s) 139
PspGI CCWGG 1 cut(s) 139
PspN4I GGNNCC 3 cut(s) 21, 243, 266
PspPI GGNCC 1 cut(s) 20
PspXI VCTCGAGB 1 cut(s) 473
PstI CTGCAG 2 cut(s) 196, 216
RseI CAYNNNNRTG 2 cut(s) 78, 114
SalI GTCGAC 1 cut(s) 320
SaqAI TTAA 1 cut(s) 622
SatI GCNGC 5 cut(s) 171, 192, 195, 212, 215
Sau3AI GATC 2 cut(s) 27, 250
Sau96I GGNCC 1 cut(s) 20
SchI GAGTC 1 cut(s) 507
ScrFI CCNGG 1 cut(s) 141
SduI GDGCHC 1 cut(s) 48
SetI ASST 7 cut(s) 10, 172, 199, 219, 308, 331, 396
SfaNI GCATC 3 cut(s) 320, 495, 528
SfcI CTRYAG 2 cut(s) 192, 212
SfoI GGCGCC 1 cut(s) 243
Sfr274I CTCGAG 2 cut(s) 389, 473
SinI GGWCC 1 cut(s) 20
SlaI CTCGAG 2 cut(s) 389, 473
SmiMI CAYNNNNRTG 2 cut(s) 78, 114
SmlI CTYRAG 2 cut(s) 389, 473
SmoI CTYRAG 2 cut(s) 389, 473
SpeI ACTAGT 1 cut(s) 457
SphI GCATGC 1 cut(s) 564
Sse9I AATT 2 cut(s) 291, 604
SspDI GGCGCC 1 cut(s) 241
SspMI CTAG 4 cut(s) 174, 218, 233, 458
StyD4I CCNGG 1 cut(s) 139
TaaI ACNGT 2 cut(s) 452, 526
TaiI ACGT 1 cut(s) 10
TaqI TCGA 4 cut(s) 26, 321, 390, 474
TasI AATT 2 cut(s) 291, 604
TfiI GAWTC 1 cut(s) 355
Tru1I TTAA 1 cut(s) 622
Tru9I TTAA 1 cut(s) 622
TscAI CASTG 2 cut(s) 243, 508
TseI GCWGC 5 cut(s) 170, 191, 194, 211, 214
TspDTI ATGAA 2 cut(s) 502, 556
TspRI CASTG 2 cut(s) 243, 508
VpaK11BI GGWCC 1 cut(s) 20
XceI RCATGY 2 cut(s) 119, 564
XhoI CTCGAG 2 cut(s) 389, 473
XmiI GTMKAC 1 cut(s) 321
XspI CTAG 4 cut(s) 174, 218, 233, 458
Zsp2I ATGCAT 2 cut(s) 521, 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.