Rmu_sc0010322.1_g000017

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010322.1
OG0000512
Physical Location & Seq
Reverse (-)
75238 .. 75729
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010322.1_g000017.1.cds

Sequence Viewer

Length: 492 bp
atgatgattcaagaacattacgacaccaacaacatgaagtatactaaaattgatttgaaggcatttgccctccaaattcttacaaaactccgctggattcatcatccagatgaagaagaaactgatcaaccaccggtagctagaaaccccagctttgactgggccaagatatttgttatgttttgctcagcctccgcgattgaaatggctctcctatccgcccaaatccactctcagctcccggcaatcttttgcttcctcggactgaccatcataatatcctttacttgcttttttgttagcaattccattcacttcaactatctgaaagtggctgatgtgctcgagcgagttggcattttttttggagtcacggcaatcttcatatccatcactgttccatttcccttgtggttcaaatgtgccacctgcttcatctatgtcctctgttggtttacaatcttgttttgtaatcacttccattcttattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

18.97

Weight (kDa)

6.35

Isoelectric Point (pI)

38.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 437
Acc36I ACCTGC 1 cut(s) 437
AccI GTMKAC 1 cut(s) 41
AccII CGCG 1 cut(s) 197
AciI CCGC 3 cut(s) 91, 195, 219
AcsI RAATTY 1 cut(s) 75
AgeI ACCGGT 1 cut(s) 133
AgsI TTSAA 5 cut(s) 11, 58, 203, 319, 418
AluBI AGCT 3 cut(s) 140, 153, 238
AluI AGCT 3 cut(s) 140, 153, 238
Alw21I GWGCWC 1 cut(s) 345
Ama87I CYCGRG 1 cut(s) 344
AoxI GGCC 1 cut(s) 162
ApoI RAATTY 1 cut(s) 75
AsiGI ACCGGT 1 cut(s) 133
AspS9I GGNCC 1 cut(s) 162
AsuC2I CCSGG 1 cut(s) 242
AvaI CYCGRG 1 cut(s) 344
Bbv12I GWGCWC 1 cut(s) 345
BccI CCATC 2 cut(s) 278, 398
BceAI ACGGC 1 cut(s) 390
BclI TGATCA 1 cut(s) 124
BcnI CCSGG 1 cut(s) 242
BfaI CTAG 1 cut(s) 141
BfuAI ACCTGC 1 cut(s) 437
BlpI GCTNAGC 1 cut(s) 187
Bme1390I CCNGG 1 cut(s) 242
BmeT110I CYCGRG 1 cut(s) 344
BmgT120I GGNCC 1 cut(s) 162
BmrFI CCNGG 1 cut(s) 242
BmrI ACTGGG 1 cut(s) 169
BmuI ACTGGG 1 cut(s) 169
Bpu1102I GCTNAGC 1 cut(s) 187
BpuMI CCSGG 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 259
BsaWI WCCGGW 1 cut(s) 133
Bse118I RCCGGY 1 cut(s) 133
Bse1I ACTGG 1 cut(s) 164
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 1 cut(s) 103
BseMII CTCAG 2 cut(s) 201, 248
BseNI ACTGG 1 cut(s) 164
BseYI CCCAGC 1 cut(s) 149
Bsh1236I CGCG 1 cut(s) 197
BshFI GGCC 1 cut(s) 164
BshTI ACCGGT 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 345
BsiHKCI CYCGRG 1 cut(s) 344
BsiSI CCGG 2 cut(s) 134, 242
BsnI GGCC 1 cut(s) 164
BsoBI CYCGRG 1 cut(s) 344
Bsp1286I GDGCHC 1 cut(s) 345
Bsp143I GATC 1 cut(s) 124
Bsp1720I GCTNAGC 1 cut(s) 187
BspACI CCGC 3 cut(s) 91, 195, 219
BspANI GGCC 1 cut(s) 164
BspCNI CTCAG 2 cut(s) 200, 247
BspFNI CGCG 1 cut(s) 197
BspMI ACCTGC 1 cut(s) 437
BsrFI RCCGGY 1 cut(s) 133
BsrI ACTGG 1 cut(s) 164
BssAI RCCGGY 1 cut(s) 133
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 1 cut(s) 124
BssNAI GTATAC 1 cut(s) 42
Bst1107I GTATAC 1 cut(s) 42
Bst4CI ACNGT 1 cut(s) 397
BstDEI CTNAG 2 cut(s) 187, 234
BstF5I GGATG 1 cut(s) 103
BstFNI CGCG 1 cut(s) 197
BstKTI GATC 1 cut(s) 127
BstMBI GATC 1 cut(s) 124
BstSCI CCNGG 1 cut(s) 240
BstUI CGCG 1 cut(s) 197
BstZ17I GTATAC 1 cut(s) 42
BsuRI GGCC 1 cut(s) 164
BtsCI GGATG 1 cut(s) 103
BtsIMutI CAGTG 1 cut(s) 393
BveI ACCTGC 1 cut(s) 437
Cfr10I RCCGGY 1 cut(s) 133
Cfr13I GGNCC 1 cut(s) 162
CspAI ACCGGT 1 cut(s) 133
CviAII CATG 1 cut(s) 34
CviJI RGCY 7 cut(s) 140, 153, 164, 191, 209, 238, 335
CviKI_1 RGCY 7 cut(s) 140, 153, 164, 191, 209, 238, 335
DdeI CTNAG 2 cut(s) 187, 234
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
EciI GGCGGA 1 cut(s) 208
Eco88I CYCGRG 1 cut(s) 344
FaeI CATG 1 cut(s) 37
FaiI YATR 6 cut(s) 35, 42, 179, 275, 386, 441
FatI CATG 1 cut(s) 33
FbaI TGATCA 1 cut(s) 124
FblI GTMKAC 1 cut(s) 41
FokI GGATG 1 cut(s) 90
FspBI CTAG 1 cut(s) 141
GsaI CCCAGC 1 cut(s) 153
HaeIII GGCC 1 cut(s) 164
HapII CCGG 2 cut(s) 134, 242
Hin1II CATG 1 cut(s) 37
HinfI GANTC 3 cut(s) 7, 97, 369
HpaII CCGG 2 cut(s) 134, 242
Hpy166II GTNNAC 2 cut(s) 42, 456
Hpy188I TCNGA 2 cut(s) 263, 327
Hpy188III TCNNGA 2 cut(s) 11, 107
Hpy8I GTNNAC 2 cut(s) 42, 456
HpyAV CCTTC 1 cut(s) 52
HpyCH4III ACNGT 1 cut(s) 397
HpyF3I CTNAG 2 cut(s) 187, 234
Hsp92II CATG 1 cut(s) 37
Ksp22I TGATCA 1 cut(s) 124
Kzo9I GATC 1 cut(s) 124
LmnI GCTCC 1 cut(s) 243
LpnPI CCDG 7 cut(s) 79, 120, 145, 147, 163, 255, 442
MaeI CTAG 1 cut(s) 141
MaeIII GTNAC 1 cut(s) 370
MalI GATC 1 cut(s) 126
MboI GATC 1 cut(s) 124
MboII GAAGA 3 cut(s) 125, 128, 373
MhlI GDGCHC 1 cut(s) 345
MluCI AATT 3 cut(s) 48, 75, 304
MlyI GAGTC 1 cut(s) 378
MnlI CCTC 4 cut(s) 80, 202, 269, 455
MslI CAYNNNNRTG 1 cut(s) 108
MspA1I CMGCKG 1 cut(s) 93
MspI CCGG 2 cut(s) 134, 242
MspR9I CCNGG 1 cut(s) 242
MvnI CGCG 1 cut(s) 197
NciI CCSGG 1 cut(s) 242
NdeII GATC 1 cut(s) 124
NlaIII CATG 1 cut(s) 37
NmuCI GTSAC 1 cut(s) 370
PaeR7I CTCGAG 1 cut(s) 344
PaqCI CACCTGC 1 cut(s) 437
PfeI GAWTC 2 cut(s) 7, 97
PinAI ACCGGT 1 cut(s) 133
PleI GAGTC 1 cut(s) 377
PpsI GAGTC 1 cut(s) 377
PspFI CCCAGC 1 cut(s) 149
PspPI GGNCC 1 cut(s) 162
PspXI VCTCGAGB 1 cut(s) 344
RseI CAYNNNNRTG 1 cut(s) 108
Sau3AI GATC 1 cut(s) 124
Sau96I GGNCC 1 cut(s) 162
SchI GAGTC 1 cut(s) 378
ScrFI CCNGG 1 cut(s) 242
SduI GDGCHC 1 cut(s) 345
SetI ASST 4 cut(s) 142, 155, 240, 431
Sfr274I CTCGAG 1 cut(s) 344
SlaI CTCGAG 1 cut(s) 344
SmiMI CAYNNNNRTG 1 cut(s) 108
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
Sse9I AATT 3 cut(s) 48, 75, 304
SsiI CCGC 3 cut(s) 91, 195, 219
SspMI CTAG 1 cut(s) 141
StyD4I CCNGG 1 cut(s) 240
TaaI ACNGT 1 cut(s) 397
TaqI TCGA 1 cut(s) 345
TasI AATT 3 cut(s) 48, 75, 304
TfiI GAWTC 2 cut(s) 7, 97
TscAI CASTG 1 cut(s) 400
TseFI GTSAC 1 cut(s) 370
Tsp45I GTSAC 1 cut(s) 370
TspDTI ATGAA 5 cut(s) 50, 89, 126, 373, 424
TspRI CASTG 1 cut(s) 400
XapI RAATTY 1 cut(s) 75
XcmI CCANNNNNNNNNTGG 1 cut(s) 408
XhoI CTCGAG 1 cut(s) 344
XmiI GTMKAC 1 cut(s) 41
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.