MD03G1011400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0000512
Physical Location & Seq
Reverse (-)
884069 .. 884593
525 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1011400.v1.1.491

Sequence Viewer

Length: 525 bp
ATGCAACAGTTTGCAGACAAGACTAATTGTAAGTACTACAACAACAACTTAGATTGGTCAAACATGATCATCATGTTTTGCTTGACAACAGTGATTGGGCTAGCGCTTCTTCCCGTTCAAATTCACTCTGGCCACCTCCCTGTAATCTTTTACTTTCTTGGAGTATCAGTCTTGCTTGCCTTCACTTGTATCTTGGTAAGCAAGTTTGTTCATTTTAACTACTGTCCCGCCGGAATATCAATCCCCCTACTTTTCCATAATTTTGGCCTCTTATTTGGAGTCACAGCCTTCTTCATATCCATCACCATCCCATTTCCCTTGTGGTTCAAATGTGTTGTCTATTCTATCTATGTCGCCGCCTTCCTACTTATTGTTCTATGTAATTTTCACTTCAATAAATATTACAAGCCTCATGGTACCCCAAAGAATTCAGCTTCTAAAAACACCATTGATCCTGTGGTAGAATCATGCCGAAGCGGTACTAGTACCATTGATGATCAAGCATGCATGAATAATATTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

19.61

Weight (kDa)

8.42

Isoelectric Point (pI)

31.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 416
AccB1I GGYRCC 1 cut(s) 416
AciI CCGC 3 cut(s) 228, 357, 477
AclWI GGATC 1 cut(s) 446
AcoI YGGCCR 1 cut(s) 130
AcsI RAATTY 2 cut(s) 120, 427
AfaI GTAC 4 cut(s) 35, 418, 481, 487
AfeI AGCGCT 1 cut(s) 105
AgsI TTSAA 3 cut(s) 119, 328, 394
AhlI ACTAGT 1 cut(s) 482
AluBI AGCT 1 cut(s) 434
AluI AGCT 1 cut(s) 434
AlwI GGATC 1 cut(s) 446
Aor51HI AGCGCT 1 cut(s) 105
AoxI GGCC 2 cut(s) 130, 265
ApoI RAATTY 2 cut(s) 120, 427
ArsI GACNNNNNNTTYG 2 cut(s) 321, 353
Asp718I GGTACC 1 cut(s) 416
AspLEI GCGC 1 cut(s) 106
AsuHPI GGTGA 1 cut(s) 295
AsuNHI GCTAGC 1 cut(s) 100
BalI TGGCCA 1 cut(s) 132
BanI GGYRCC 1 cut(s) 416
BccI CCATC 2 cut(s) 308, 314
BclI TGATCA 2 cut(s) 66, 496
BcuI ACTAGT 1 cut(s) 482
BfaI CTAG 2 cut(s) 101, 483
BfoI RGCGCY 1 cut(s) 107
BisI GCNGC 1 cut(s) 357
BlsI GCNGC 1 cut(s) 358
BmcAI AGTACT 1 cut(s) 35
BmiI GGNNCC 1 cut(s) 418
BmtI GCTAGC 1 cut(s) 104
BsaXI ACNNNNNCTCC 2 cut(s) 153, 183
BseGI GGATG 1 cut(s) 306
BshFI GGCC 2 cut(s) 132, 267
BshNI GGYRCC 1 cut(s) 416
BsiSI CCGG 1 cut(s) 231
BslFI GGGAC 1 cut(s) 210
BsmFI GGGAC 1 cut(s) 210
BsnI GGCC 2 cut(s) 132, 267
Bsp143I GATC 3 cut(s) 66, 451, 496
BspACI CCGC 3 cut(s) 228, 357, 477
BspANI GGCC 2 cut(s) 132, 267
BspLI GGNNCC 1 cut(s) 418
BspOI GCTAGC 1 cut(s) 104
BspPI GGATC 1 cut(s) 446
BspT107I GGYRCC 1 cut(s) 416
BssMI GATC 3 cut(s) 66, 451, 496
Bst4CI ACNGT 3 cut(s) 9, 91, 224
BstC8I GCNNGC 3 cut(s) 102, 177, 505
BstDEI CTNAG 1 cut(s) 49
BstF5I GGATG 1 cut(s) 306
BstH2I RGCGCY 1 cut(s) 107
BstHHI GCGC 1 cut(s) 106
BstKTI GATC 3 cut(s) 69, 454, 499
BstMBI GATC 3 cut(s) 66, 451, 496
BstNSI RCATGY 1 cut(s) 507
BstXI CCANNNNNNTGG 1 cut(s) 263
BsuRI GGCC 2 cut(s) 132, 267
BtsCI GGATG 1 cut(s) 306
BtsIMutI CAGTG 1 cut(s) 96
Cac8I GCNNGC 3 cut(s) 102, 177, 505
CfoI GCGC 1 cut(s) 106
Csp6I GTAC 4 cut(s) 34, 417, 480, 486
CviAII CATG 6 cut(s) 64, 73, 413, 468, 504, 508
CviJI RGCY 6 cut(s) 100, 132, 267, 287, 409, 434
CviKI_1 RGCY 6 cut(s) 100, 132, 267, 287, 409, 434
CviQI GTAC 4 cut(s) 34, 417, 480, 486
DdeI CTNAG 1 cut(s) 49
DpnI GATC 3 cut(s) 68, 453, 498
DpnII GATC 3 cut(s) 66, 451, 496
EaeI YGGCCR 1 cut(s) 130
Eco47III AGCGCT 1 cut(s) 105
EcoRI GAATTC 1 cut(s) 427
EcoT22I ATGCAT 1 cut(s) 509
FaeI CATG 6 cut(s) 67, 76, 416, 471, 507, 511
FaqI GGGAC 1 cut(s) 210
FatI CATG 6 cut(s) 63, 72, 412, 467, 503, 507
FauI CCCGC 1 cut(s) 235
FbaI TGATCA 2 cut(s) 66, 496
Fnu4HI GCNGC 1 cut(s) 357
FokI GGATG 1 cut(s) 293
Fsp4HI GCNGC 1 cut(s) 357
FspBI CTAG 2 cut(s) 101, 483
GlaI GCGC 1 cut(s) 105
GluI GCNGC 1 cut(s) 357
HaeII RGCGCY 1 cut(s) 107
HaeIII GGCC 2 cut(s) 132, 267
HapII CCGG 1 cut(s) 231
HhaI GCGC 1 cut(s) 106
Hin1II CATG 6 cut(s) 67, 76, 416, 471, 507, 511
Hin6I GCGC 1 cut(s) 104
HinP1I GCGC 1 cut(s) 104
HinfI GANTC 2 cut(s) 279, 464
HpaII CCGG 1 cut(s) 231
HphI GGTGA 1 cut(s) 295
HpyAV CCTTC 3 cut(s) 190, 298, 370
HpyCH4III ACNGT 3 cut(s) 9, 91, 224
HpyCH4V TGCA 3 cut(s) 4, 14, 507
HpyF3I CTNAG 1 cut(s) 49
Hsp92II CATG 6 cut(s) 67, 76, 416, 471, 507, 511
HspAI GCGC 1 cut(s) 104
KpnI GGTACC 1 cut(s) 420
Ksp22I TGATCA 2 cut(s) 66, 496
Kzo9I GATC 3 cut(s) 66, 451, 496
LpnPI CCDG 4 cut(s) 114, 153, 244, 468
MaeI CTAG 2 cut(s) 101, 483
MaeIII GTNAC 1 cut(s) 280
MalI GATC 3 cut(s) 68, 453, 498
MboI GATC 3 cut(s) 66, 451, 496
MboII GAAGA 2 cut(s) 101, 283
MlsI TGGCCA 1 cut(s) 132
MluCI AATT 5 cut(s) 25, 120, 259, 382, 427
MluNI TGGCCA 1 cut(s) 132
MlyI GAGTC 1 cut(s) 288
MnlI CCTC 3 cut(s) 146, 278, 420
Mox20I TGGCCA 1 cut(s) 132
Mph1103I ATGCAT 1 cut(s) 509
MscI TGGCCA 1 cut(s) 132
MseI TTAA 1 cut(s) 216
Msp20I TGGCCA 1 cut(s) 132
MspI CCGG 1 cut(s) 231
NdeII GATC 3 cut(s) 66, 451, 496
NheI GCTAGC 1 cut(s) 100
NlaIII CATG 6 cut(s) 67, 76, 416, 471, 507, 511
NlaIV GGNNCC 1 cut(s) 418
NmuCI GTSAC 1 cut(s) 280
NsiI ATGCAT 1 cut(s) 509
NspI RCATGY 1 cut(s) 507
PaeI GCATGC 1 cut(s) 507
PfeI GAWTC 1 cut(s) 464
PkrI GCNGC 1 cut(s) 358
PleI GAGTC 1 cut(s) 287
PpsI GAGTC 1 cut(s) 287
PspN4I GGNNCC 1 cut(s) 418
RsaI GTAC 4 cut(s) 35, 418, 481, 487
RsaNI GTAC 4 cut(s) 34, 417, 480, 486
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 1 cut(s) 357
Sau3AI GATC 3 cut(s) 66, 451, 496
ScaI AGTACT 1 cut(s) 35
SchI GAGTC 1 cut(s) 288
SetI ASST 2 cut(s) 138, 436
SpeI ACTAGT 1 cut(s) 482
SphI GCATGC 1 cut(s) 507
Sse9I AATT 5 cut(s) 25, 120, 259, 382, 427
SsiI CCGC 3 cut(s) 228, 357, 477
SspI AATATT 2 cut(s) 401, 517
SspMI CTAG 2 cut(s) 101, 483
TaaI ACNGT 3 cut(s) 9, 91, 224
TasI AATT 5 cut(s) 25, 120, 259, 382, 427
TatI WGTACW 1 cut(s) 33
TauI GCSGC 1 cut(s) 359
TfiI GAWTC 1 cut(s) 464
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TscAI CASTG 1 cut(s) 96
TseFI GTSAC 1 cut(s) 280
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 3 cut(s) 200, 283, 524
TspRI CASTG 1 cut(s) 96
XapI RAATTY 2 cut(s) 120, 427
XceI RCATGY 1 cut(s) 507
XcmI CCANNNNNNNNNTGG 2 cut(s) 318, 454
XspI CTAG 2 cut(s) 101, 483
ZrmI AGTACT 1 cut(s) 35
Zsp2I ATGCAT 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.