pycom11g00930

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000512
Physical Location & Seq
Reverse (-)
715211 .. 715909
699 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g00930.1

Sequence Viewer

Length: 699 bp
ATGAATTGTGTTGTTAATACTGCTTGTGAGCAGTACTTAAAGCCTTTTCTCCTTGCACTTATTGCAAAGACAACCCAACTGCTCAAACTTCTAATAATTAGTCCCGTTGATCGCGATCACGATTGTGATCATGACCTAGAAGCTGCAAGGCAACAAGCTCCAGATGGTACGATAGTTACTAACTATAAGTACCACAACAACAACTTAGATTGGGCAAAGACAATCGTCATGTTTTGCTTGACAGCGGCGATTGGACTAGCACTTCTCCCCTTCCAAATTCCCTCCAGCCAGCTTCATCTCCCTGTAATCTTTTACTTCTTTGGACTCTCAGTCTTACTTGCCTTCACTTGCATTTTGGTAAGCAAGTTCATTCACTTCAACTACTGTCCCGCTGGAATATCAATTGCCAGGATTTCCCATCATTTTGGCCTCTTCTTTGGAGTCACAGCCTTCTTCATATCCATCACCGTCCCATTTCCTTTGTGGTTCAAATGGGCTGCCTGTTCTATCTACGTTGCCGCCTTCCTACTTGTAGCTCTCTGTAATCTTCACTTCAATAAATATTACAAACCTCATGGTCATAAATACCCTACCCCAAAGAATTCAATTTCTAACACCGCCATTGATACTGCCGTAGAATCATGCCGAGGTGATACTAGTACTGTTGATGATCAAGCATGCACCGATAGTATTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

25.92

Weight (kDa)

7.11

Isoelectric Point (pI)

32.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 114
AciI CCGC 4 cut(s) 245, 390, 519, 618
AcsI RAATTY 2 cut(s) 276, 601
AfaI GTAC 4 cut(s) 35, 169, 191, 661
AgsI TTSAA 4 cut(s) 379, 490, 556, 606
AhdI GACNNNNNGTC 1 cut(s) 329
AhlI ACTAGT 1 cut(s) 656
AjnI CCWGG 1 cut(s) 407
AleI CACNNNNGTG 1 cut(s) 123
AluBI AGCT 4 cut(s) 143, 158, 292, 536
AluI AGCT 4 cut(s) 143, 158, 292, 536
AoxI GGCC 1 cut(s) 427
ApeKI GCWGC 2 cut(s) 143, 497
ApoI RAATTY 2 cut(s) 276, 601
AsuHPI GGTGA 2 cut(s) 457, 662
BaeI ACNNNNGTAYC 4 cut(s) 159, 192, 618, 651
BbvI GCAGC 2 cut(s) 130, 484
BccI CCATC 3 cut(s) 158, 426, 470
BceAI ACGGC 1 cut(s) 617
BciT130I CCWGG 1 cut(s) 409
BclI TGATCA 2 cut(s) 127, 670
BcuI ACTAGT 1 cut(s) 656
BfaI CTAG 3 cut(s) 137, 257, 657
BisI GCNGC 4 cut(s) 144, 246, 498, 519
BlsI GCNGC 4 cut(s) 145, 247, 499, 520
BmcAI AGTACT 2 cut(s) 35, 661
Bme1390I CCNGG 1 cut(s) 409
BmeRI GACNNNNNGTC 1 cut(s) 329
BmrFI CCNGG 1 cut(s) 409
BoxI GACNNNNGTC 1 cut(s) 224
BpmI CTGGAG 2 cut(s) 144, 268
BsaBI GATNNNNATC 2 cut(s) 114, 126
BsaJI CCNNGG 1 cut(s) 646
Bse8I GATNNNNATC 2 cut(s) 114, 126
BseBI CCWGG 1 cut(s) 409
BseDI CCNNGG 1 cut(s) 646
BseJI GATNNNNATC 2 cut(s) 114, 126
BseMII CTCAG 1 cut(s) 342
BseXI GCAGC 2 cut(s) 130, 484
Bsh1236I CGCG 1 cut(s) 114
BshFI GGCC 1 cut(s) 429
BslFI GGGAC 3 cut(s) 87, 372, 455
BsmFI GGGAC 3 cut(s) 87, 372, 455
BsnI GGCC 1 cut(s) 429
Bsp143I GATC 4 cut(s) 109, 115, 127, 670
Bsp68I TCGCGA 1 cut(s) 114
BspACI CCGC 4 cut(s) 245, 390, 519, 618
BspANI GGCC 1 cut(s) 429
BspCNI CTCAG 1 cut(s) 341
BspFNI CGCG 1 cut(s) 114
BspHI TCATGA 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 646
BssMI GATC 4 cut(s) 109, 115, 127, 670
Bst2UI CCWGG 1 cut(s) 409
Bst4CI ACNGT 3 cut(s) 386, 469, 664
Bst6I CTCTTC 1 cut(s) 437
BstAPI GCANNNNNTGC 1 cut(s) 62
BstC8I GCNNGC 2 cut(s) 290, 679
BstDEI CTNAG 2 cut(s) 205, 328
BstFNI CGCG 1 cut(s) 114
BstKTI GATC 4 cut(s) 112, 118, 130, 673
BstMBI GATC 4 cut(s) 109, 115, 127, 670
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNI CCWGG 1 cut(s) 409
BstNSI RCATGY 1 cut(s) 681
BstPAI GACNNNNGTC 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 407
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 2 cut(s) 130, 484
BstXI CCANNNNNNTGG 1 cut(s) 425
BsuRI GGCC 1 cut(s) 429
BtuMI TCGCGA 1 cut(s) 114
Cac8I GCNNGC 2 cut(s) 290, 679
CciI TCATGA 1 cut(s) 130
Csp6I GTAC 4 cut(s) 34, 168, 190, 660
CviAII CATG 5 cut(s) 131, 229, 575, 642, 678
CviJI RGCY 9 cut(s) 43, 143, 158, 288, 292, 429, 449, 497, 536
CviKI_1 RGCY 9 cut(s) 43, 143, 158, 288, 292, 429, 449, 497, 536
CviQI GTAC 4 cut(s) 34, 168, 190, 660
DdeI CTNAG 2 cut(s) 205, 328
DpnI GATC 4 cut(s) 111, 117, 129, 672
DpnII GATC 4 cut(s) 109, 115, 127, 670
DriI GACNNNNNGTC 1 cut(s) 329
Eam1104I CTCTTC 1 cut(s) 437
Eam1105I GACNNNNNGTC 1 cut(s) 329
EarI CTCTTC 1 cut(s) 437
EcoRI GAATTC 1 cut(s) 601
EcoRII CCWGG 1 cut(s) 407
FaeI CATG 5 cut(s) 134, 232, 578, 645, 681
FaiI YATR 8 cut(s) 132, 186, 230, 458, 576, 582, 643, 679
FaqI GGGAC 3 cut(s) 87, 372, 455
FatI CATG 5 cut(s) 130, 228, 574, 641, 677
FauI CCCGC 1 cut(s) 397
FbaI TGATCA 2 cut(s) 127, 670
Fnu4HI GCNGC 4 cut(s) 144, 246, 498, 519
Fsp4HI GCNGC 4 cut(s) 144, 246, 498, 519
FspBI CTAG 3 cut(s) 137, 257, 657
GluI GCNGC 4 cut(s) 144, 246, 498, 519
GsuI CTGGAG 2 cut(s) 144, 268
HaeIII GGCC 1 cut(s) 429
Hin1II CATG 5 cut(s) 134, 232, 578, 645, 681
HinfI GANTC 3 cut(s) 324, 441, 638
HphI GGTGA 2 cut(s) 457, 662
Hpy188III TCNNGA 4 cut(s) 113, 119, 131, 161
HpyAV CCTTC 4 cut(s) 280, 352, 460, 532
HpyCH4III ACNGT 3 cut(s) 386, 469, 664
HpyCH4IV ACGT 1 cut(s) 513
HpyCH4V TGCA 5 cut(s) 56, 65, 146, 351, 681
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 2 cut(s) 205, 328
HpySE526I ACGT 1 cut(s) 513
Hsp92II CATG 5 cut(s) 134, 232, 578, 645, 681
Ksp22I TGATCA 2 cut(s) 127, 670
Kzo9I GATC 4 cut(s) 109, 115, 127, 670
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 8 cut(s) 174, 298, 302, 315, 378, 394, 421, 514
Lsp1109I GCAGC 2 cut(s) 130, 484
MaeI CTAG 3 cut(s) 137, 257, 657
MaeII ACGT 1 cut(s) 513
MaeIII GTNAC 2 cut(s) 175, 442
MalI GATC 4 cut(s) 111, 117, 129, 672
MboI GATC 4 cut(s) 109, 115, 127, 670
MboII GAAGA 3 cut(s) 424, 445, 539
MfeI CAATTG 1 cut(s) 402
MluCI AATT 6 cut(s) 4, 96, 276, 402, 601, 606
MlyI GAGTC 2 cut(s) 318, 450
MnlI CCTC 4 cut(s) 292, 440, 582, 641
MseI TTAA 2 cut(s) 15, 38
MslI CAYNNNNRTG 1 cut(s) 123
MspA1I CMGCKG 2 cut(s) 245, 392
MspR9I CCNGG 1 cut(s) 409
MunI CAATTG 1 cut(s) 402
MvaI CCWGG 1 cut(s) 409
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 1 cut(s) 62
NdeII GATC 4 cut(s) 109, 115, 127, 670
NlaIII CATG 5 cut(s) 134, 232, 578, 645, 681
NmeAIII GCCGAG 1 cut(s) 671
NmuCI GTSAC 1 cut(s) 442
NruI TCGCGA 1 cut(s) 114
NspI RCATGY 1 cut(s) 681
OliI CACNNNNGTG 1 cut(s) 123
PaeI GCATGC 1 cut(s) 681
PagI TCATGA 1 cut(s) 130
PfeI GAWTC 1 cut(s) 638
PkrI GCNGC 4 cut(s) 145, 247, 499, 520
PleI GAGTC 2 cut(s) 318, 449
PpsI GAGTC 2 cut(s) 318, 449
PshAI GACNNNNGTC 1 cut(s) 224
Psp6I CCWGG 1 cut(s) 407
PspGI CCWGG 1 cut(s) 407
RruI TCGCGA 1 cut(s) 114
RsaI GTAC 4 cut(s) 35, 169, 191, 661
RsaNI GTAC 4 cut(s) 34, 168, 190, 660
RseI CAYNNNNRTG 1 cut(s) 123
SaqAI TTAA 2 cut(s) 15, 38
SatI GCNGC 4 cut(s) 144, 246, 498, 519
Sau3AI GATC 4 cut(s) 109, 115, 127, 670
ScaI AGTACT 2 cut(s) 35, 661
SchI GAGTC 2 cut(s) 318, 450
ScrFI CCNGG 1 cut(s) 409
SetI ASST 8 cut(s) 138, 145, 160, 294, 516, 538, 574, 652
SmiMI CAYNNNNRTG 1 cut(s) 123
SpeI ACTAGT 1 cut(s) 656
SphI GCATGC 1 cut(s) 681
Sse9I AATT 6 cut(s) 4, 96, 276, 402, 601, 606
SsiI CCGC 4 cut(s) 245, 390, 519, 618
SspI AATATT 1 cut(s) 563
SspMI CTAG 3 cut(s) 137, 257, 657
StyD4I CCNGG 1 cut(s) 407
TaaI ACNGT 3 cut(s) 386, 469, 664
TaiI ACGT 1 cut(s) 516
TasI AATT 6 cut(s) 4, 96, 276, 402, 601, 606
TatI WGTACW 2 cut(s) 33, 659
TauI GCSGC 2 cut(s) 248, 521
TfiI GAWTC 1 cut(s) 638
Tru1I TTAA 2 cut(s) 15, 38
Tru9I TTAA 2 cut(s) 15, 38
TseFI GTSAC 1 cut(s) 442
TseI GCWGC 2 cut(s) 143, 497
Tsp45I GTSAC 1 cut(s) 442
TspDTI ATGAA 4 cut(s) 17, 284, 358, 445
XapI RAATTY 2 cut(s) 276, 601
XceI RCATGY 1 cut(s) 681
XcmI CCANNNNNNNNNTGG 1 cut(s) 480
XspI CTAG 3 cut(s) 137, 257, 657
ZrmI AGTACT 2 cut(s) 35, 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.