pycom11g00910

MULE transposase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000512
Physical Location & Seq
Reverse (-)
687030 .. 687539
510 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g00910.1

Sequence Viewer

Length: 510 bp
ATGAAACGTTTTATTGCAACGATATTCCAACTGCTCGATGCTCTGATAATCAGTCCCGTTGATCGTGATCATCCCTATGGCGAACCAGACCTAGAAGCCCCGGTGCTGCAAGTTCCAGATCAGAGAAAGTATGATAAGTTCCCAACCAACAACTTAGATTCAAGGATAATTGTTGGGTTTTGCTTCACATCAGCAATCGGACTAGCGCTTATCCGCGTCCAAATTCCTCCAGGCCAGCTCCCTCTCCCAGTGATCGTTGACCTTCTTGGACTATCAGTCTTATTTGCCTTCACTTGTATCCTGGTGAGCAAATCCATTCACTCCAGCTACTCTCTCGCTGGAATATCAATAGCCGGCCTTTCTCATCATTTTGGCCTCTTCTTTGGGATCGATCACTGCCTTCTTCATATCCATCACCATCTCATTTCCTTTGTGGTTCAAATGTGCTGCCTATTCTATCTACGTCACCGCCTTCCTTCTTGTAGCTTTCTGCAATCTTCACTTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

170

Amino Acids

18.89

Weight (kDa)

7.13

Isoelectric Point (pI)

46.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 216
AciI CCGC 2 cut(s) 214, 469
AclI AACGTT 1 cut(s) 7
AclWI GGATC 1 cut(s) 395
AcsI RAATTY 1 cut(s) 222
AfeI AGCGCT 1 cut(s) 207
AgsI TTSAA 3 cut(s) 162, 440, 506
AhdI GACNNNNNGTC 1 cut(s) 275
AjnI CCWGG 2 cut(s) 229, 300
AluBI AGCT 3 cut(s) 238, 327, 486
AluI AGCT 3 cut(s) 238, 327, 486
AlwI GGATC 1 cut(s) 395
Aor51HI AGCGCT 1 cut(s) 207
AoxI GGCC 3 cut(s) 232, 355, 373
ApeKI GCWGC 2 cut(s) 106, 447
ApoI RAATTY 1 cut(s) 222
AspLEI GCGC 1 cut(s) 208
AsuC2I CCSGG 1 cut(s) 101
AsuHPI GGTGA 3 cut(s) 316, 407, 458
BbvI GCAGC 2 cut(s) 93, 434
BccI CCATC 2 cut(s) 420, 426
BciT130I CCWGG 2 cut(s) 231, 302
BciVI GTATCC 1 cut(s) 308
BclI TGATCA 1 cut(s) 67
BcnI CCSGG 1 cut(s) 101
BfaI CTAG 2 cut(s) 92, 203
BfoI RGCGCY 1 cut(s) 209
BfuI GTATCC 1 cut(s) 308
BisI GCNGC 2 cut(s) 107, 448
BlsI GCNGC 2 cut(s) 108, 449
Bme1390I CCNGG 3 cut(s) 101, 231, 302
BmeRI GACNNNNNGTC 1 cut(s) 275
BmrFI CCNGG 3 cut(s) 101, 231, 302
BmrI ACTGGG 1 cut(s) 242
BmsI GCATC 1 cut(s) 28
BmuI ACTGGG 1 cut(s) 242
BpmI CTGGAG 2 cut(s) 213, 307
BpuMI CCSGG 1 cut(s) 101
Bsa29I ATCGAT 1 cut(s) 390
BsaBI GATNNNNATC 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 99
Bse118I RCCGGY 1 cut(s) 353
Bse1I ACTGG 1 cut(s) 248
Bse8I GATNNNNATC 1 cut(s) 66
BseBI CCWGG 2 cut(s) 231, 302
BseCI ATCGAT 1 cut(s) 390
BseDI CCNNGG 1 cut(s) 99
BseGI GGATG 1 cut(s) 70
BseJI GATNNNNATC 1 cut(s) 66
BseNI ACTGG 1 cut(s) 248
BseXI GCAGC 2 cut(s) 93, 434
Bsh1236I CGCG 1 cut(s) 216
BshFI GGCC 3 cut(s) 234, 357, 375
BshVI ATCGAT 1 cut(s) 390
BsiSI CCGG 2 cut(s) 101, 354
BslFI GGGAC 1 cut(s) 39
BsmFI GGGAC 1 cut(s) 39
BsnI GGCC 3 cut(s) 234, 357, 375
Bsp143I GATC 6 cut(s) 61, 67, 118, 252, 387, 391
BspACI CCGC 2 cut(s) 214, 469
BspANI GGCC 3 cut(s) 234, 357, 375
BspDI ATCGAT 1 cut(s) 390
BspFNI CGCG 1 cut(s) 216
BspPI GGATC 1 cut(s) 395
BsrFI RCCGGY 1 cut(s) 353
BsrI ACTGG 1 cut(s) 248
BssAI RCCGGY 1 cut(s) 353
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 6 cut(s) 61, 67, 118, 252, 387, 391
Bst2UI CCWGG 2 cut(s) 231, 302
Bst6I CTCTTC 1 cut(s) 383
BstC8I GCNNGC 2 cut(s) 236, 355
BstDEI CTNAG 1 cut(s) 154
BstF5I GGATG 1 cut(s) 70
BstFNI CGCG 1 cut(s) 216
BstH2I RGCGCY 1 cut(s) 209
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 6 cut(s) 64, 70, 121, 255, 390, 394
BstMBI GATC 6 cut(s) 61, 67, 118, 252, 387, 391
BstNI CCWGG 2 cut(s) 231, 302
BstSCI CCNGG 3 cut(s) 99, 229, 300
BstUI CGCG 1 cut(s) 216
BstV1I GCAGC 2 cut(s) 93, 434
Bsu15I ATCGAT 1 cut(s) 390
BsuI GTATCC 1 cut(s) 308
BsuRI GGCC 3 cut(s) 234, 357, 375
BsuTUI ATCGAT 1 cut(s) 390
BtsCI GGATG 1 cut(s) 70
BtsI GCAGTG 1 cut(s) 394
BtsIMutI CAGTG 2 cut(s) 255, 394
Cac8I GCNNGC 2 cut(s) 236, 355
CfoI GCGC 1 cut(s) 208
Cfr10I RCCGGY 1 cut(s) 353
ClaI ATCGAT 1 cut(s) 390
CseI GACGC 1 cut(s) 205
CviJI RGCY 8 cut(s) 98, 234, 238, 327, 353, 357, 375, 486
CviKI_1 RGCY 8 cut(s) 98, 234, 238, 327, 353, 357, 375, 486
DdeI CTNAG 1 cut(s) 154
DpnI GATC 6 cut(s) 63, 69, 120, 254, 389, 393
DpnII GATC 6 cut(s) 61, 67, 118, 252, 387, 391
DriI GACNNNNNGTC 1 cut(s) 275
Eam1104I CTCTTC 1 cut(s) 383
Eam1105I GACNNNNNGTC 1 cut(s) 275
EarI CTCTTC 1 cut(s) 383
Eco47III AGCGCT 1 cut(s) 207
EcoRII CCWGG 2 cut(s) 229, 300
FaiI YATR 3 cut(s) 78, 132, 408
FaqI GGGAC 1 cut(s) 39
FbaI TGATCA 1 cut(s) 67
Fnu4HI GCNGC 2 cut(s) 107, 448
FokI GGATG 1 cut(s) 57
Fsp4HI GCNGC 2 cut(s) 107, 448
FspBI CTAG 2 cut(s) 92, 203
GlaI GCGC 1 cut(s) 207
GluI GCNGC 2 cut(s) 107, 448
GsuI CTGGAG 2 cut(s) 213, 307
HaeII RGCGCY 1 cut(s) 209
HaeIII GGCC 3 cut(s) 234, 357, 375
HapII CCGG 2 cut(s) 101, 354
HgaI GACGC 1 cut(s) 205
HhaI GCGC 1 cut(s) 208
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HinfI GANTC 1 cut(s) 158
HpaII CCGG 2 cut(s) 101, 354
HphI GGTGA 3 cut(s) 316, 407, 458
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 3 cut(s) 45, 123, 200
Hpy188III TCNNGA 2 cut(s) 65, 116
Hpy8I GTNNAC 1 cut(s) 259
HpyAV CCTTC 5 cut(s) 272, 298, 410, 482, 486
HpyCH4IV ACGT 2 cut(s) 7, 463
HpyCH4V TGCA 3 cut(s) 17, 109, 493
HpyF3I CTNAG 1 cut(s) 154
HpySE526I ACGT 2 cut(s) 7, 463
HspAI GCGC 1 cut(s) 206
KroI GCCGGC 1 cut(s) 353
KroNI GCCGGC 1 cut(s) 355
Ksp22I TGATCA 1 cut(s) 67
Kzo9I GATC 6 cut(s) 61, 67, 118, 252, 387, 391
LmnI GCTCC 1 cut(s) 243
Lsp1109I GCAGC 2 cut(s) 93, 434
LweI GCATC 1 cut(s) 28
MaeI CTAG 2 cut(s) 92, 203
MaeII ACGT 2 cut(s) 7, 463
MaeIII GTNAC 1 cut(s) 464
MalI GATC 6 cut(s) 63, 69, 120, 254, 389, 393
MboI GATC 6 cut(s) 61, 67, 118, 252, 387, 391
MboII GAAGA 3 cut(s) 370, 395, 489
MluCI AATT 2 cut(s) 168, 222
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 3 cut(s) 237, 252, 386
MroNI GCCGGC 1 cut(s) 353
MslI CAYNNNNRTG 1 cut(s) 75
MspI CCGG 2 cut(s) 101, 354
MspR9I CCNGG 3 cut(s) 101, 231, 302
MvaI CCWGG 2 cut(s) 231, 302
MvnI CGCG 1 cut(s) 216
NaeI GCCGGC 1 cut(s) 355
NciI CCSGG 1 cut(s) 101
NdeII GATC 6 cut(s) 61, 67, 118, 252, 387, 391
NgoMIV GCCGGC 1 cut(s) 353
NmuCI GTSAC 1 cut(s) 464
PdiI GCCGGC 1 cut(s) 355
PfeI GAWTC 1 cut(s) 158
PkrI GCNGC 2 cut(s) 108, 449
Psp1406I AACGTT 1 cut(s) 7
Psp6I CCWGG 2 cut(s) 229, 300
PspGI CCWGG 2 cut(s) 229, 300
PsrI GAACNNNNNNTAC 2 cut(s) 122, 154
RseI CAYNNNNRTG 1 cut(s) 75
SatI GCNGC 2 cut(s) 107, 448
Sau3AI GATC 6 cut(s) 61, 67, 118, 252, 387, 391
ScrFI CCNGG 3 cut(s) 101, 231, 302
SetI ASST 7 cut(s) 10, 93, 240, 264, 329, 466, 488
SfaNI GCATC 1 cut(s) 28
SmiMI CAYNNNNRTG 1 cut(s) 75
Sse9I AATT 2 cut(s) 168, 222
SsiI CCGC 2 cut(s) 214, 469
SspMI CTAG 2 cut(s) 92, 203
StyD4I CCNGG 3 cut(s) 99, 229, 300
TaiI ACGT 2 cut(s) 10, 466
TaqI TCGA 2 cut(s) 36, 390
TasI AATT 2 cut(s) 168, 222
TfiI GAWTC 1 cut(s) 158
TscAI CASTG 2 cut(s) 255, 401
TseFI GTSAC 1 cut(s) 464
TseI GCWGC 2 cut(s) 106, 447
Tsp45I GTSAC 1 cut(s) 464
TspDTI ATGAA 2 cut(s) 17, 395
TspRI CASTG 2 cut(s) 255, 401
XapI RAATTY 1 cut(s) 222
XspI CTAG 2 cut(s) 92, 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.