FvH4_5g13223

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
7475020 .. 7476069
1050 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g13223.t1

Sequence Viewer

Length: 417 bp
ATGACGTTTCAGCTTGCTGTTATCACCAAATCACTGCTCCAAATTTTTGGAGCCTGTCATGGTCCTCCTGATACAGAAGCAGCCGAGCCAGATAGGCACCACCGCAACATAGGATGGCGTAAGATTATCGCTGGCTCCTGCTGGGCAGCAGCCATTGATATAGCCTTGCAGTCCATTCACTCCATTCACTCCACAGAGTTCACTCTCCCTATGACCTTTTACTTCCTCGCCTTTGCAATCATATTTGCCATTACTTGTGTCTTTGTCAGCAACTTCATTCACTCAAACTATCCACAACCAACTCTCATACTCGAGCGAATGGGTGTCTTCTTTGGACACAAGCATATTTGTCCAAAGTTTACTATGCCAGAGCCAGATTACAGCAGCAGCATATCTCTAAAGATAATAAGGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.58

Weight (kDa)

7.78

Isoelectric Point (pI)

58.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 96
AciI CCGC 1 cut(s) 103
AcsI RAATTY 1 cut(s) 42
AluBI AGCT 1 cut(s) 13
AluI AGCT 1 cut(s) 13
Ama87I CYCGRG 1 cut(s) 311
ApeKI GCWGC 5 cut(s) 80, 146, 149, 384, 387
ApoI RAATTY 1 cut(s) 42
AspS9I GGNCC 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 16
AvaI CYCGRG 1 cut(s) 311
AvaII GGWCC 1 cut(s) 62
BanI GGYRCC 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 319
BbvI GCAGC 5 cut(s) 92, 158, 161, 396, 399
BccI CCATC 1 cut(s) 108
BglI GCCNNNNNGGC 1 cut(s) 94
BisI GCNGC 5 cut(s) 81, 147, 150, 385, 388
BlsI GCNGC 5 cut(s) 82, 148, 151, 386, 389
Bme18I GGWCC 1 cut(s) 62
BmeT110I CYCGRG 1 cut(s) 311
BmgT120I GGNCC 1 cut(s) 62
BmiI GGNNCC 3 cut(s) 52, 98, 136
BpiI GAAGAC 1 cut(s) 319
BseGI GGATG 1 cut(s) 119
BseXI GCAGC 5 cut(s) 92, 158, 161, 396, 399
BseYI CCCAGC 1 cut(s) 141
BshNI GGYRCC 1 cut(s) 96
BsiHKCI CYCGRG 1 cut(s) 311
BsoBI CYCGRG 1 cut(s) 311
BspACI CCGC 1 cut(s) 103
BspLI GGNNCC 3 cut(s) 52, 98, 136
BspT107I GGYRCC 1 cut(s) 96
BstC8I GCNNGC 2 cut(s) 15, 133
BstF5I GGATG 1 cut(s) 119
BstMWI GCNNNNNNNGC 1 cut(s) 94
BstV1I GCAGC 5 cut(s) 92, 158, 161, 396, 399
BstV2I GAAGAC 1 cut(s) 319
BstXI CCANNNNNNTGG 1 cut(s) 47
BtsCI GGATG 1 cut(s) 119
BtsI GCAGTG 1 cut(s) 32
BtsIMutI CAGTG 1 cut(s) 32
Cac8I GCNNGC 2 cut(s) 15, 133
Cfr13I GGNCC 1 cut(s) 62
CviAII CATG 1 cut(s) 59
CviJI RGCY 8 cut(s) 13, 53, 83, 88, 135, 152, 164, 373
CviKI_1 RGCY 8 cut(s) 13, 53, 83, 88, 135, 152, 164, 373
Eco47I GGWCC 1 cut(s) 62
Eco88I CYCGRG 1 cut(s) 311
FaeI CATG 1 cut(s) 62
FaiI YATR 9 cut(s) 60, 110, 161, 212, 242, 308, 345, 365, 392
FatI CATG 1 cut(s) 58
Fnu4HI GCNGC 5 cut(s) 81, 147, 150, 385, 388
FokI GGATG 1 cut(s) 126
Fsp4HI GCNGC 5 cut(s) 81, 147, 150, 385, 388
GluI GCNGC 5 cut(s) 81, 147, 150, 385, 388
GsaI CCCAGC 1 cut(s) 145
Hin1II CATG 1 cut(s) 62
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 201, 360
Hpy188III TCNNGA 1 cut(s) 68
Hpy8I GTNNAC 2 cut(s) 201, 360
HpyCH4IV ACGT 1 cut(s) 5
HpyCH4V TGCA 2 cut(s) 169, 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 94
HpySE526I ACGT 1 cut(s) 5
Hsp92II CATG 1 cut(s) 62
LmnI GCTCC 3 cut(s) 42, 50, 140
LpnPI CCDG 8 cut(s) 67, 81, 102, 117, 127, 151, 381, 387
Lsp1109I GCAGC 5 cut(s) 92, 158, 161, 396, 399
MaeII ACGT 1 cut(s) 5
MboII GAAGA 1 cut(s) 319
MluCI AATT 1 cut(s) 42
MnlI CCTC 2 cut(s) 75, 236
MwoI GCNNNNNNNGC 1 cut(s) 94
NlaIII CATG 1 cut(s) 62
NlaIV GGNNCC 3 cut(s) 52, 98, 136
NmeAIII GCCGAG 1 cut(s) 109
PaeR7I CTCGAG 1 cut(s) 311
PkrI GCNGC 5 cut(s) 82, 148, 151, 386, 389
PspFI CCCAGC 1 cut(s) 141
PspN4I GGNNCC 3 cut(s) 52, 98, 136
PspPI GGNCC 1 cut(s) 62
PspXI VCTCGAGB 1 cut(s) 311
SatI GCNGC 5 cut(s) 81, 147, 150, 385, 388
Sau96I GGNCC 1 cut(s) 62
SetI ASST 3 cut(s) 8, 15, 218
Sfr274I CTCGAG 1 cut(s) 311
SinI GGWCC 1 cut(s) 62
SlaI CTCGAG 1 cut(s) 311
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 1 cut(s) 42
SsiI CCGC 1 cut(s) 103
TaiI ACGT 1 cut(s) 8
TaqI TCGA 1 cut(s) 312
TasI AATT 1 cut(s) 42
TscAI CASTG 1 cut(s) 39
TseI GCWGC 5 cut(s) 80, 146, 149, 384, 387
TspDTI ATGAA 1 cut(s) 265
TspRI CASTG 1 cut(s) 39
VpaK11BI GGWCC 1 cut(s) 62
XapI RAATTY 1 cut(s) 42
XhoI CTCGAG 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.