MD11G1013400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000512
Physical Location & Seq
Reverse (-)
1003306 .. 1003908
603 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1013400.v1.1.491

Sequence Viewer

Length: 603 bp
ATGATTTGTTTTGTTAATACTGCTTACAATTGCGAACAAGACCTAGAAGCCGCAATGCAACAAGTTCCAGATGGGAGGACTAACTATAAGTACCCCACCAACAACTTTGATTGGCCACAAATCATCGTCGTGTTTTGCTTGACAGCGGCGTTTGGACTAGCGCTCCTCCCCTTCCAATTTCCCTCCGGCAAGCTTCCTCTCCCTATAATCTTTTACTTTCTTGGACTATCAATCTTACTTGCTTTCACTTGTATCTTGGTAAGCAAGTTTATTCACTTCAGCTACTGTCTTGCCGGAATATCAATCGCCCAGATTTTCCATCATTTTGGCATCTTCTTTGGAGTCACAGCCTTCTTTATATCCATCATTGTCCCATTTCCTTTGTGGTTTAAATGTGTTGCCTATTCTATCTATGTTGTCGCCTTCCTCCTTGTAGTTCTCTGCAATCTTCACTTCAATAAATATTACAAACCTCATGATTTTAAGTACCCTAAAACCCCAAACAATTCAATTTCGGAAACCGCCATTAATCCTATGGTAGAATCATGCCGAGACAGTACTAGCACCATTGATGATCAAGCATGCACCAATAGTATCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.7

Weight (kDa)

6.17

Isoelectric Point (pI)

32.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 51, 146, 522
AcoI YGGCCR 1 cut(s) 113
AcuI CTGAAG 1 cut(s) 262
AfaI GTAC 3 cut(s) 92, 488, 559
AfeI AGCGCT 1 cut(s) 162
AgsI TTSAA 2 cut(s) 457, 510
AluBI AGCT 2 cut(s) 193, 282
AluI AGCT 2 cut(s) 193, 282
Alw26I GTCTC 1 cut(s) 546
AlwNI CAGNNNCTG 1 cut(s) 285
Aor51HI AGCGCT 1 cut(s) 162
AoxI GGCC 1 cut(s) 113
AseI ATTAAT 1 cut(s) 528
AspLEI GCGC 1 cut(s) 163
BalI TGGCCA 1 cut(s) 115
BccI CCATC 3 cut(s) 65, 327, 371
BclI TGATCA 1 cut(s) 574
BcoDI GTCTC 1 cut(s) 546
BfaI CTAG 3 cut(s) 44, 158, 561
BfoI RGCGCY 1 cut(s) 164
BisI GCNGC 2 cut(s) 51, 147
BlsI GCNGC 2 cut(s) 52, 148
BmcAI AGTACT 1 cut(s) 559
BmsI GCATC 1 cut(s) 339
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
Bse3DI GCAATG 1 cut(s) 60
BseMI GCAATG 1 cut(s) 60
BseRI GAGGAG 1 cut(s) 155
BshFI GGCC 1 cut(s) 115
BsiSI CCGG 2 cut(s) 186, 294
BslFI GGGAC 1 cut(s) 356
BsmAI GTCTC 1 cut(s) 546
BsmFI GGGAC 1 cut(s) 356
BsnI GGCC 1 cut(s) 115
Bsp143I GATC 1 cut(s) 574
BspACI CCGC 3 cut(s) 51, 146, 522
BspANI GGCC 1 cut(s) 115
BspHI TCATGA 1 cut(s) 475
BsrDI GCAATG 1 cut(s) 60
BssMI GATC 1 cut(s) 574
Bst4CI ACNGT 2 cut(s) 287, 557
BstC8I GCNNGC 2 cut(s) 191, 583
BstH2I RGCGCY 1 cut(s) 164
BstHHI GCGC 1 cut(s) 163
BstKTI GATC 1 cut(s) 577
BstMAI GTCTC 1 cut(s) 546
BstMBI GATC 1 cut(s) 574
BstNSI RCATGY 1 cut(s) 585
BstXI CCANNNNNNTGG 1 cut(s) 326
BsuRI GGCC 1 cut(s) 115
Cac8I GCNNGC 2 cut(s) 191, 583
CaiI CAGNNNCTG 1 cut(s) 285
CciI TCATGA 1 cut(s) 475
CfoI GCGC 1 cut(s) 163
Csp6I GTAC 3 cut(s) 91, 487, 558
CviAII CATG 3 cut(s) 476, 546, 582
CviJI RGCY 5 cut(s) 50, 115, 193, 282, 350
CviKI_1 RGCY 5 cut(s) 50, 115, 193, 282, 350
CviQI GTAC 3 cut(s) 91, 487, 558
DpnI GATC 1 cut(s) 576
DpnII GATC 1 cut(s) 574
DraI TTTAAA 1 cut(s) 391
EaeI YGGCCR 1 cut(s) 113
Eco47III AGCGCT 1 cut(s) 162
Eco57I CTGAAG 1 cut(s) 262
FaeI CATG 3 cut(s) 479, 549, 585
FaiI YATR 8 cut(s) 87, 206, 359, 414, 477, 536, 547, 583
FaqI GGGAC 1 cut(s) 356
FatI CATG 3 cut(s) 475, 545, 581
FbaI TGATCA 1 cut(s) 574
Fnu4HI GCNGC 2 cut(s) 51, 147
Fsp4HI GCNGC 2 cut(s) 51, 147
FspBI CTAG 3 cut(s) 44, 158, 561
GlaI GCGC 1 cut(s) 162
GluI GCNGC 2 cut(s) 51, 147
HaeII RGCGCY 1 cut(s) 164
HaeIII GGCC 1 cut(s) 115
HapII CCGG 2 cut(s) 186, 294
HhaI GCGC 1 cut(s) 163
Hin1II CATG 3 cut(s) 479, 549, 585
Hin6I GCGC 1 cut(s) 161
HinP1I GCGC 1 cut(s) 161
HindIII AAGCTT 1 cut(s) 191
HinfI GANTC 2 cut(s) 342, 542
HpaII CCGG 2 cut(s) 186, 294
Hpy188I TCNGA 1 cut(s) 517
Hpy188III TCNNGA 2 cut(s) 68, 476
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 3 cut(s) 181, 361, 433
HpyCH4III ACNGT 2 cut(s) 287, 557
HpyCH4V TGCA 3 cut(s) 58, 444, 585
Hsp92II CATG 3 cut(s) 479, 549, 585
HspAI GCGC 1 cut(s) 161
Ksp22I TGATCA 1 cut(s) 574
Kzo9I GATC 1 cut(s) 574
LmnI GCTCC 1 cut(s) 168
LpnPI CCDG 4 cut(s) 81, 199, 307, 323
LweI GCATC 1 cut(s) 339
MaeI CTAG 3 cut(s) 44, 158, 561
MaeIII GTNAC 1 cut(s) 343
MalI GATC 1 cut(s) 576
MboI GATC 1 cut(s) 574
MboII GAAGA 2 cut(s) 325, 440
MfeI CAATTG 1 cut(s) 28
MlsI TGGCCA 1 cut(s) 115
MluCI AATT 4 cut(s) 28, 176, 505, 510
MluNI TGGCCA 1 cut(s) 115
MlyI GAGTC 1 cut(s) 351
MnlI CCTC 6 cut(s) 69, 176, 193, 207, 437, 483
Mox20I TGGCCA 1 cut(s) 115
MscI TGGCCA 1 cut(s) 115
MseI TTAA 4 cut(s) 15, 390, 483, 528
MslI CAYNNNNRTG 1 cut(s) 128
Msp20I TGGCCA 1 cut(s) 115
MspA1I CMGCKG 1 cut(s) 146
MspI CCGG 2 cut(s) 186, 294
MunI CAATTG 1 cut(s) 28
NdeII GATC 1 cut(s) 574
NlaIII CATG 3 cut(s) 479, 549, 585
NmeAIII GCCGAG 1 cut(s) 575
NmuCI GTSAC 1 cut(s) 343
NspI RCATGY 1 cut(s) 585
PaeI GCATGC 1 cut(s) 585
PagI TCATGA 1 cut(s) 475
PfeI GAWTC 1 cut(s) 542
PkrI GCNGC 2 cut(s) 52, 148
PleI GAGTC 1 cut(s) 350
PpsI GAGTC 1 cut(s) 350
PshBI ATTAAT 1 cut(s) 528
PstNI CAGNNNCTG 1 cut(s) 285
RsaI GTAC 3 cut(s) 92, 488, 559
RsaNI GTAC 3 cut(s) 91, 487, 558
RseI CAYNNNNRTG 1 cut(s) 128
SaqAI TTAA 4 cut(s) 15, 390, 483, 528
SatI GCNGC 2 cut(s) 51, 147
Sau3AI GATC 1 cut(s) 574
ScaI AGTACT 1 cut(s) 559
SchI GAGTC 1 cut(s) 351
SetI ASST 4 cut(s) 45, 195, 284, 475
SfaNI GCATC 1 cut(s) 339
SmiMI CAYNNNNRTG 1 cut(s) 128
SphI GCATGC 1 cut(s) 585
Sse9I AATT 4 cut(s) 28, 176, 505, 510
SsiI CCGC 3 cut(s) 51, 146, 522
SspI AATATT 1 cut(s) 464
SspMI CTAG 3 cut(s) 44, 158, 561
TaaI ACNGT 2 cut(s) 287, 557
TaqI TCGA 1 cut(s) 597
TasI AATT 4 cut(s) 28, 176, 505, 510
TatI WGTACW 1 cut(s) 557
TauI GCSGC 2 cut(s) 53, 149
TfiI GAWTC 1 cut(s) 542
Tru1I TTAA 4 cut(s) 15, 390, 483, 528
Tru9I TTAA 4 cut(s) 15, 390, 483, 528
TseFI GTSAC 1 cut(s) 343
Tsp45I GTSAC 1 cut(s) 343
VspI ATTAAT 1 cut(s) 528
XceI RCATGY 1 cut(s) 585
XcmI CCANNNNNNNNNTGG 2 cut(s) 381, 532
XspI CTAG 3 cut(s) 44, 158, 561
ZrmI AGTACT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.