pycom07g22580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000512
Physical Location & Seq
Reverse (-)
23855511 .. 23856182
672 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g22580.1

Sequence Viewer

Length: 672 bp
ATGAGTTATGTTGTTAATACTGCTTGGGATCAGTACTTAAAGCCTTTTCTCCTTGCAGTTACAGTAACAACAACCCAACAACTCAAACTTCTGATAATTGGTCCCAACGATCGAGATCCCGATTCCGATCGTGACCTAGAAGCTGCAAGGCAAGAAGTTGCAGACGAGAGGACTAACAATAAGTACGACAACAACAACTTAGACTGGGCAACAATAATCGTAGTGTTTTGCTTTACAACGGCGATTGGAATAGCAGTTCTCCCCTTCCAAGGTCCCTTCGGCCAGCTCCATCTCCCTGTAATCTTTTACTTTCTTGGACTCTCAGTCTTACTTGCCTTCACTTGCATCTTGGTAAGCAAATTTATTCACTTCAACTATTGTCCCGCCGGAATACCAATTGCCCCGATTTTCCATCAACTTGGCCTCTTCTTTGGGGTCACAGCCTTCTTCATATCCATCTCCATCCCATTTCCTTTGTGGTTCAAATATGCTGCCTTGTCTATCTATGTCATCACCTTCCTCCTTGTAGTTCTCTGCAATCTCCACTTCAATAAATATTACAAAACTCATGGTTTTAAGTATCCTAACCCCGCCATTGATCCTACAGTAGAATCATGCGGAGGCAGTACTAGCACCATTGATGATCAAGCATGTACCAGTCGTATTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

224

Amino Acids

25.07

Weight (kDa)

5.67

Isoelectric Point (pI)

34.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 384, 591, 618
AclWI GGATC 3 cut(s) 36, 110, 593
AcoI YGGCCR 1 cut(s) 280
AcsI RAATTY 1 cut(s) 359
AfaI GTAC 4 cut(s) 35, 185, 628, 655
AfiI CCNNNNNNNGG 1 cut(s) 269
AgsI TTSAA 3 cut(s) 373, 484, 550
AhdI GACNNNNNGTC 1 cut(s) 323
AloI GAACNNNNNNTCC 2 cut(s) 240, 272
AluBI AGCT 2 cut(s) 143, 286
AluI AGCT 2 cut(s) 143, 286
AlwI GGATC 3 cut(s) 36, 110, 593
AoxI GGCC 2 cut(s) 280, 421
ApeKI GCWGC 2 cut(s) 143, 491
ApoI RAATTY 1 cut(s) 359
AspS9I GGNCC 2 cut(s) 101, 272
AsuHPI GGTGA 1 cut(s) 505
AvaII GGWCC 2 cut(s) 101, 272
BbvI GCAGC 2 cut(s) 130, 478
BccI CCATC 4 cut(s) 297, 420, 464, 470
BceAI ACGGC 1 cut(s) 255
BciVI GTATCC 1 cut(s) 591
BclI TGATCA 1 cut(s) 643
BfaI CTAG 2 cut(s) 137, 630
BfmI CTRYAG 1 cut(s) 603
BfuI GTATCC 1 cut(s) 591
BisI GCNGC 2 cut(s) 144, 492
BlsI GCNGC 2 cut(s) 145, 493
BmcAI AGTACT 2 cut(s) 35, 628
Bme18I GGWCC 2 cut(s) 101, 272
BmeRI GACNNNNNGTC 1 cut(s) 323
BmgT120I GGNCC 2 cut(s) 101, 272
BmiI GGNNCC 2 cut(s) 103, 274
BmrI ACTGGG 1 cut(s) 214
BmsI GCATC 1 cut(s) 354
BmuI ACTGGG 1 cut(s) 214
BsaBI GATNNNNATC 2 cut(s) 114, 126
BsaJI CCNNGG 1 cut(s) 268
Bsc4I CCNNNNNNNGG 1 cut(s) 269
Bse1I ACTGG 2 cut(s) 209, 657
Bse8I GATNNNNATC 2 cut(s) 114, 126
BseDI CCNNGG 1 cut(s) 268
BseGI GGATG 1 cut(s) 462
BseJI GATNNNNATC 2 cut(s) 114, 126
BseLI CCNNNNNNNGG 1 cut(s) 269
BseMII CTCAG 1 cut(s) 336
BseNI ACTGG 2 cut(s) 209, 657
BseXI GCAGC 2 cut(s) 130, 478
Bsh1285I CGRYCG 2 cut(s) 112, 130
BshFI GGCC 2 cut(s) 282, 423
BsiEI CGRYCG 2 cut(s) 112, 130
BsiSI CCGG 1 cut(s) 387
BslFI GGGAC 3 cut(s) 87, 258, 366
BslI CCNNNNNNNGG 1 cut(s) 269
BsmFI GGGAC 3 cut(s) 87, 258, 366
BsnI GGCC 2 cut(s) 282, 423
Bsp143I GATC 6 cut(s) 28, 109, 115, 127, 598, 643
BspACI CCGC 3 cut(s) 384, 591, 618
BspANI GGCC 2 cut(s) 282, 423
BspCNI CTCAG 1 cut(s) 335
BspLI GGNNCC 2 cut(s) 103, 274
BspPI GGATC 3 cut(s) 36, 110, 593
BsrI ACTGG 2 cut(s) 209, 657
BssECI CCNNGG 1 cut(s) 268
BssMI GATC 6 cut(s) 28, 109, 115, 127, 598, 643
BssT1I CCWWGG 1 cut(s) 268
Bst4CI ACNGT 2 cut(s) 64, 607
Bst6I CTCTTC 1 cut(s) 431
BstC8I GCNNGC 1 cut(s) 284
BstDEI CTNAG 2 cut(s) 199, 322
BstF5I GGATG 1 cut(s) 462
BstKTI GATC 6 cut(s) 31, 112, 118, 130, 601, 646
BstMBI GATC 6 cut(s) 28, 109, 115, 127, 598, 643
BstMCI CGRYCG 2 cut(s) 112, 130
BstMWI GCNNNNNNNGC 1 cut(s) 630
BstNSI RCATGY 1 cut(s) 654
BstSFI CTRYAG 1 cut(s) 603
BstV1I GCAGC 2 cut(s) 130, 478
BstX2I RGATCY 1 cut(s) 115
BstXI CCANNNNNNTGG 1 cut(s) 419
BstYI RGATCY 1 cut(s) 115
BsuI GTATCC 1 cut(s) 591
BsuRI GGCC 2 cut(s) 282, 423
BtsCI GGATG 1 cut(s) 462
Cac8I GCNNGC 1 cut(s) 284
Cfr13I GGNCC 2 cut(s) 101, 272
Csp6I GTAC 4 cut(s) 34, 184, 627, 654
CviAII CATG 3 cut(s) 569, 615, 651
CviJI RGCY 6 cut(s) 43, 143, 282, 286, 423, 443
CviKI_1 RGCY 6 cut(s) 43, 143, 282, 286, 423, 443
CviQI GTAC 4 cut(s) 34, 184, 627, 654
DdeI CTNAG 2 cut(s) 199, 322
DpnI GATC 6 cut(s) 30, 111, 117, 129, 600, 645
DpnII GATC 6 cut(s) 28, 109, 115, 127, 598, 643
DriI GACNNNNNGTC 1 cut(s) 323
EaeI YGGCCR 1 cut(s) 280
Eam1104I CTCTTC 1 cut(s) 431
Eam1105I GACNNNNNGTC 1 cut(s) 323
EarI CTCTTC 1 cut(s) 431
Eco130I CCWWGG 1 cut(s) 268
Eco47I GGWCC 2 cut(s) 101, 272
EcoO109I RGGNCCY 1 cut(s) 272
EcoT14I CCWWGG 1 cut(s) 268
ErhI CCWWGG 1 cut(s) 268
FaeI CATG 3 cut(s) 572, 618, 654
FaiI YATR 7 cut(s) 9, 452, 489, 507, 570, 616, 652
FaqI GGGAC 3 cut(s) 87, 258, 366
FatI CATG 3 cut(s) 568, 614, 650
FauI CCCGC 2 cut(s) 391, 598
FbaI TGATCA 1 cut(s) 643
Fnu4HI GCNGC 2 cut(s) 144, 492
FokI GGATG 1 cut(s) 449
Fsp4HI GCNGC 2 cut(s) 144, 492
FspBI CTAG 2 cut(s) 137, 630
GluI GCNGC 2 cut(s) 144, 492
HaeIII GGCC 2 cut(s) 282, 423
HapII CCGG 1 cut(s) 387
Hin1II CATG 3 cut(s) 572, 618, 654
HinfI GANTC 3 cut(s) 122, 318, 611
HpaII CCGG 1 cut(s) 387
HphI GGTGA 1 cut(s) 505
Hpy188I TCNGA 2 cut(s) 93, 127
Hpy188III TCNNGA 3 cut(s) 113, 119, 131
HpyAV CCTTC 5 cut(s) 274, 286, 346, 454, 526
HpyCH4III ACNGT 2 cut(s) 64, 607
HpyCH4V TGCA 5 cut(s) 56, 146, 161, 345, 537
HpyF10VI GCNNNNNNNGC 1 cut(s) 630
HpyF3I CTNAG 2 cut(s) 199, 322
Hsp92II CATG 3 cut(s) 572, 618, 654
Ksp22I TGATCA 1 cut(s) 643
Kzo9I GATC 6 cut(s) 28, 109, 115, 127, 598, 643
LmnI GCTCC 1 cut(s) 291
LpnPI CCDG 4 cut(s) 190, 296, 309, 400
Lsp1109I GCAGC 2 cut(s) 130, 478
LweI GCATC 1 cut(s) 354
MaeI CTAG 2 cut(s) 137, 630
MaeIII GTNAC 4 cut(s) 58, 64, 131, 436
MalI GATC 6 cut(s) 30, 111, 117, 129, 600, 645
MboI GATC 6 cut(s) 28, 109, 115, 127, 598, 643
MboII GAAGA 2 cut(s) 418, 439
MfeI CAATTG 1 cut(s) 396
MflI RGATCY 1 cut(s) 115
MluCI AATT 3 cut(s) 96, 359, 396
MlyI GAGTC 1 cut(s) 312
MnlI CCTC 4 cut(s) 162, 434, 530, 614
MseI TTAA 3 cut(s) 15, 38, 576
MspI CCGG 1 cut(s) 387
MunI CAATTG 1 cut(s) 396
MwoI GCNNNNNNNGC 1 cut(s) 630
NdeII GATC 6 cut(s) 28, 109, 115, 127, 598, 643
NlaIII CATG 3 cut(s) 572, 618, 654
NlaIV GGNNCC 2 cut(s) 103, 274
NmuCI GTSAC 2 cut(s) 131, 436
NspI RCATGY 1 cut(s) 654
PfeI GAWTC 2 cut(s) 122, 611
PkrI GCNGC 2 cut(s) 145, 493
Ple19I CGATCG 2 cut(s) 112, 130
PleI GAGTC 1 cut(s) 312
PpsI GAGTC 1 cut(s) 312
PpuMI RGGWCCY 1 cut(s) 272
Psp5II RGGWCCY 1 cut(s) 272
PspN4I GGNNCC 2 cut(s) 103, 274
PspPI GGNCC 2 cut(s) 101, 272
PspPPI RGGWCCY 1 cut(s) 272
PsuI RGATCY 1 cut(s) 115
PvuI CGATCG 2 cut(s) 112, 130
RsaI GTAC 4 cut(s) 35, 185, 628, 655
RsaNI GTAC 4 cut(s) 34, 184, 627, 654
SaqAI TTAA 3 cut(s) 15, 38, 576
SatI GCNGC 2 cut(s) 144, 492
Sau3AI GATC 6 cut(s) 28, 109, 115, 127, 598, 643
Sau96I GGNCC 2 cut(s) 101, 272
ScaI AGTACT 2 cut(s) 35, 628
SchI GAGTC 1 cut(s) 312
SetI ASST 5 cut(s) 138, 145, 274, 288, 518
SfaNI GCATC 1 cut(s) 354
SfcI CTRYAG 1 cut(s) 603
SinI GGWCC 2 cut(s) 101, 272
Sse9I AATT 3 cut(s) 96, 359, 396
SsiI CCGC 3 cut(s) 384, 591, 618
SspI AATATT 1 cut(s) 557
SspMI CTAG 2 cut(s) 137, 630
StyI CCWWGG 1 cut(s) 268
TaaI ACNGT 2 cut(s) 64, 607
TaqI TCGA 1 cut(s) 112
TasI AATT 3 cut(s) 96, 359, 396
TatI WGTACW 2 cut(s) 33, 626
TfiI GAWTC 2 cut(s) 122, 611
Tru1I TTAA 3 cut(s) 15, 38, 576
Tru9I TTAA 3 cut(s) 15, 38, 576
TseFI GTSAC 2 cut(s) 131, 436
TseI GCWGC 2 cut(s) 143, 491
Tsp45I GTSAC 2 cut(s) 131, 436
TspDTI ATGAA 1 cut(s) 439
VpaK11BI GGWCC 2 cut(s) 101, 272
XapI RAATTY 1 cut(s) 359
XceI RCATGY 1 cut(s) 654
XcmI CCANNNNNNNNNTGG 1 cut(s) 474
XspI CTAG 2 cut(s) 137, 630
ZrmI AGTACT 2 cut(s) 35, 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.