Rh7BG063100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000512
Physical Location & Seq
Forward (+)
4195137 .. 4195532
396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG063100.1

Sequence Viewer

Length: 396 bp
ATGGCTCAACCAGGAGCAGCAGCAGCGCCTAGACAACCCAACCACCTGCTAGATTATTGGGCAAAGATACTTGTTGTGTTCTGCTCGGTAACCGCTATTGACATGGCTCTCATCTCCGCCCAAATCCACTCTCAGCTTCCTGCAATCTTTTGCTTCCTCGGATTAACAATCATACTTGCCTTTACTTGCTTCTTTGTAGGCAAATGTATTCACTCCAACTTTGAACAAGCAGCTCTGGTGCTCCAGCTATTCGGCCTTTTCTTTGGAGTCACTGCAATCTTCATAGCCATCACCATTCCATTTCCTTTGTGGTTCAAATGCGTCACCTGCTTCATCTATGTGCTATGCTGGCTCACAATCTTGATTTGTAATTACTTCCATTCTTACTTGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.67

Weight (kDa)

7.57

Isoelectric Point (pI)

29.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13130 FvH4_5g13140 FvH4_5g13141 FvH4_5g13170 FvH4_5g13220 FvH4_5g13221 FvH4_5g13222 FvH4_5g13223 FvH4_5g13230
malus_domestica MD03G1009100.v1.1 MD03G1009500.v1.1 MD03G1009600.v1.1 MD03G1010100.v1.1 MD03G1011400.v1.1 MD11G1013400.v1.1 MD11G1013900.v1.1 MD12G1151700.v1.1 MD12G1151900.v1.1 MD14G1141800.v1.1
prunus_persica Prupe.1G109400_v2.0.a1 Prupe.3G028900_v2.0.a1 Prupe.6G011200_v2.0.a1 Prupe.6G011700_v2.0.a1 Prupe.6G011800_v2.0.a1
pyrus_communis pycom03g01000 pycom07g22580 pycom11g00910 pycom11g00930
rosa_chinensis RchiOBHm_Chr7g0240781 RchiOBHm_Chr7g0241491
rosa_laevigata RLG00000000572 RLG00000005009 RLG00000014262 RLG00000021010 RLG00000021011 RLG00000026751
rosa_multiflora Rmu_sc0000215.1_g000008 Rmu_sc0001275.1_g000010 Rmu_sc0002761.1_g000010 Rmu_sc0003825.1_g000034 Rmu_sc0004712.1_g000019 Rmu_sc0004712.1_g000020 Rmu_sc0004712.1_g000025 Rmu_sc0004712.1_g000028 Rmu_sc0004712.1_g000030 Rmu_sc0004821.1_g000003 Rmu_sc0005888.1_g000011 Rmu_sc0007533.1_g000008 Rmu_sc0007533.1_g000010 Rmu_sc0008698.1_g000006 Rmu_sc0010322.1_g000017 Rmu_sc0010483.1_g000002 Rmu_sc0013122.1_g000003
rosa_roxburghii Rroxscaffold_176G00431730 Rroxscaffold_3G00219000 Rroxscaffold_3G00269990 Rroxscaffold_3G00270040 Rroxscaffold_3G00270050 Rroxscaffold_3G00270060 Rroxscaffold_4G00283100 Rroxscaffold_6G00430000
rosa_rugosa Rorug01G0382000 Rorug02G0463100 Rorug02G0644300 Rorug06G0011800 Rorug06G0461600 Rorug07G0344600 Rorug07G0344700
rosa_samantha Rh2AG527500 Rh2AG527800 Rh2CG512000 Rh2CG512200 Rh2DG550800 Rh2DG551000 Rh3CG048300 Rh3DG049200 Rh7AG062500 Rh7AG062700 Rh7AG062800 Rh7BG062900 Rh7BG063000 Rh7BG063100 Rh7BG469800 Rh7DG062500 Rh7DG062800 Rh7DG063400 Rh7DG063500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 54, 335
Acc36I ACCTGC 2 cut(s) 54, 335
AciI CCGC 2 cut(s) 93, 117
AgsI TTSAA 2 cut(s) 224, 316
AjnI CCWGG 1 cut(s) 10
AluBI AGCT 3 cut(s) 136, 233, 247
AluI AGCT 3 cut(s) 136, 233, 247
Alw21I GWGCWC 1 cut(s) 243
AoxI GGCC 1 cut(s) 253
ApeKI GCWGC 4 cut(s) 17, 20, 23, 230
AspLEI GCGC 1 cut(s) 28
AsuHPI GGTGA 2 cut(s) 283, 316
Bbv12I GWGCWC 1 cut(s) 243
BbvI GCAGC 4 cut(s) 29, 32, 35, 242
BccI CCATC 1 cut(s) 296
BciT130I CCWGG 1 cut(s) 12
BfaI CTAG 2 cut(s) 30, 50
BfoI RGCGCY 1 cut(s) 29
BfuAI ACCTGC 2 cut(s) 54, 335
BisI GCNGC 4 cut(s) 18, 21, 24, 231
BlsI GCNGC 4 cut(s) 19, 22, 25, 232
Bme1390I CCNGG 1 cut(s) 12
BmrFI CCNGG 1 cut(s) 12
BpmI CTGGAG 1 cut(s) 227
BsaJI CCNNGG 1 cut(s) 157
BseBI CCWGG 1 cut(s) 12
BseDI CCNNGG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 146
BseXI GCAGC 4 cut(s) 29, 32, 35, 242
BshFI GGCC 1 cut(s) 255
BsiHKAI GWGCWC 1 cut(s) 243
BsnI GGCC 1 cut(s) 255
Bsp1286I GDGCHC 1 cut(s) 243
BspACI CCGC 2 cut(s) 93, 117
BspANI GGCC 1 cut(s) 255
BspCNI CTCAG 1 cut(s) 145
BspMI ACCTGC 2 cut(s) 54, 335
BssECI CCNNGG 1 cut(s) 157
Bst2UI CCWGG 1 cut(s) 12
BstC8I GCNNGC 1 cut(s) 350
BstDEI CTNAG 1 cut(s) 132
BstEII GGTNACC 1 cut(s) 88
BstH2I RGCGCY 1 cut(s) 29
BstHHI GCGC 1 cut(s) 28
BstMWI GCNNNNNNNGC 3 cut(s) 23, 327, 349
BstNI CCWGG 1 cut(s) 12
BstPI GGTNACC 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 10
BstV1I GCAGC 4 cut(s) 29, 32, 35, 242
BsuRI GGCC 1 cut(s) 255
BtsI GCAGTG 1 cut(s) 270
BtsIMutI CAGTG 1 cut(s) 270
BveI ACCTGC 2 cut(s) 54, 335
Cac8I GCNNGC 1 cut(s) 350
CfoI GCGC 1 cut(s) 28
CseI GACGC 1 cut(s) 310
CviAII CATG 1 cut(s) 103
CviJI RGCY 8 cut(s) 5, 107, 136, 233, 247, 255, 287, 352
CviKI_1 RGCY 8 cut(s) 5, 107, 136, 233, 247, 255, 287, 352
DdeI CTNAG 1 cut(s) 132
EciI GGCGGA 1 cut(s) 106
Eco91I GGTNACC 1 cut(s) 88
EcoO65I GGTNACC 1 cut(s) 88
EcoRII CCWGG 1 cut(s) 10
FaeI CATG 1 cut(s) 106
FaiI YATR 6 cut(s) 104, 173, 284, 339, 346, 394
FatI CATG 1 cut(s) 102
Fnu4HI GCNGC 4 cut(s) 18, 21, 24, 231
Fsp4HI GCNGC 4 cut(s) 18, 21, 24, 231
FspBI CTAG 2 cut(s) 30, 50
GlaI GCGC 1 cut(s) 27
GluI GCNGC 4 cut(s) 18, 21, 24, 231
GsuI CTGGAG 1 cut(s) 227
HaeII RGCGCY 1 cut(s) 29
HaeIII GGCC 1 cut(s) 255
HgaI GACGC 1 cut(s) 310
HhaI GCGC 1 cut(s) 28
Hin1II CATG 1 cut(s) 106
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HinfI GANTC 1 cut(s) 267
HphI GGTGA 2 cut(s) 283, 316
Hpy188I TCNGA 1 cut(s) 161
Hpy188III TCNNGA 1 cut(s) 361
HpyCH4V TGCA 2 cut(s) 143, 275
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 327, 349
HpyF3I CTNAG 1 cut(s) 132
Hsp92II CATG 1 cut(s) 106
HspAI GCGC 1 cut(s) 26
LmnI GCTCC 2 cut(s) 14, 246
LpnPI CCDG 7 cut(s) 24, 59, 153, 221, 257, 334, 340
Lsp1109I GCAGC 4 cut(s) 29, 32, 35, 242
MaeI CTAG 2 cut(s) 30, 50
MaeIII GTNAC 3 cut(s) 88, 268, 322
MboII GAAGA 1 cut(s) 271
MhlI GDGCHC 1 cut(s) 243
MluCI AATT 1 cut(s) 370
MlyI GAGTC 1 cut(s) 276
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 1 cut(s) 167
MseI TTAA 1 cut(s) 164
MslI CAYNNNNRTG 1 cut(s) 338
MspR9I CCNGG 1 cut(s) 12
MvaI CCWGG 1 cut(s) 12
MwoI GCNNNNNNNGC 3 cut(s) 23, 327, 349
NlaIII CATG 1 cut(s) 106
NmuCI GTSAC 2 cut(s) 268, 322
PaqCI CACCTGC 2 cut(s) 54, 335
PkrI GCNGC 4 cut(s) 19, 22, 25, 232
PleI GAGTC 1 cut(s) 275
PpsI GAGTC 1 cut(s) 275
Psp6I CCWGG 1 cut(s) 10
PspEI GGTNACC 1 cut(s) 88
PspGI CCWGG 1 cut(s) 10
RseI CAYNNNNRTG 1 cut(s) 338
SaqAI TTAA 1 cut(s) 164
SatI GCNGC 4 cut(s) 18, 21, 24, 231
SchI GAGTC 1 cut(s) 276
ScrFI CCNGG 1 cut(s) 12
SduI GDGCHC 1 cut(s) 243
SetI ASST 5 cut(s) 48, 138, 235, 249, 329
SmiMI CAYNNNNRTG 1 cut(s) 338
Sse9I AATT 1 cut(s) 370
SsiI CCGC 2 cut(s) 93, 117
SspMI CTAG 2 cut(s) 30, 50
StyD4I CCNGG 1 cut(s) 10
TasI AATT 1 cut(s) 370
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TscAI CASTG 1 cut(s) 277
TseFI GTSAC 2 cut(s) 268, 322
TseI GCWGC 4 cut(s) 17, 20, 23, 230
Tsp45I GTSAC 2 cut(s) 268, 322
TspDTI ATGAA 2 cut(s) 271, 322
TspRI CASTG 1 cut(s) 277
XcmI CCANNNNNNNNNTGG 1 cut(s) 306
XspI CTAG 2 cut(s) 30, 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.